Wall clock time and date at job start Sat Apr 11 2020 07:07:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86798 * 120.00436 * 2 1
4 4 H 1.48497 * 109.47227 * 240.00092 * 3 2 1
5 5 H 1.48496 * 109.47219 * 0.02562 * 3 2 1
6 6 H 1.48506 * 109.47037 * 120.00564 * 3 2 1
7 7 C 1.38823 * 119.99572 * 180.02562 * 2 1 3
8 8 H 1.07996 * 119.99454 * 197.35995 * 7 2 1
9 9 N 1.36929 * 119.99968 * 17.35282 * 7 2 1
10 10 C 1.46927 * 120.63357 * 207.66954 * 9 7 2
11 11 C 1.53197 * 108.76424 * 233.64189 * 10 9 7
12 12 C 1.53034 * 109.31316 * 305.33949 * 11 10 9
13 13 H 1.08998 * 109.46544 * 301.37530 * 12 11 10
14 14 N 1.46497 * 109.46225 * 181.40038 * 12 11 10
15 15 C 1.34777 * 119.99869 * 84.97002 * 14 12 11
16 16 O 1.21279 * 120.00451 * 0.02562 * 15 14 12
17 17 C 1.50701 * 120.00049 * 180.02562 * 15 14 12
18 18 C 1.50694 * 109.47256 * 180.02562 * 17 15 14
19 19 C 1.34226 * 126.56646 * 265.02213 * 18 17 15
20 20 N 1.36923 * 109.91542 * 179.97438 * 19 18 17
21 21 H 0.97001 * 124.98469 * 180.02562 * 20 19 18
22 22 C 1.37422 * 110.02112 * 0.02562 * 20 19 18
23 23 N 1.32654 * 133.18643 * 179.97438 * 22 20 19
24 24 C 1.31590 * 121.66680 * 179.97438 * 23 22 20
25 25 C 1.38662 * 121.58667 * 0.02562 * 24 23 22
26 26 C 1.38198 * 119.41059 * 359.97438 * 25 24 23
27 27 C 1.39701 * 118.03868 * 0.02562 * 26 25 24
28 28 C 1.53043 * 109.52777 * 61.38627 * 12 11 10
29 29 H 1.08995 * 109.49945 * 178.63940 * 28 12 11
30 30 O 1.42905 * 109.49351 * 58.57698 * 28 12 11
31 31 C 1.46933 * 120.63207 * 27.69601 * 9 7 2
32 32 H 0.97000 * 119.99091 * 359.97438 * 1 2 3
33 33 H 1.08997 * 109.58179 * 353.41791 * 10 9 7
34 34 H 1.09000 * 109.58867 * 113.70061 * 10 9 7
35 35 H 1.09000 * 109.48489 * 185.39691 * 11 10 9
36 36 H 1.08999 * 109.50945 * 65.29882 * 11 10 9
37 37 H 0.97000 * 119.99895 * 264.97612 * 14 12 11
38 38 H 1.08997 * 109.47128 * 60.00108 * 17 15 14
39 39 H 1.09004 * 109.46903 * 300.00513 * 17 15 14
40 40 H 1.08001 * 125.04537 * 0.26727 * 19 18 17
41 41 H 1.08006 * 119.20798 * 180.02562 * 24 23 22
42 42 H 1.07997 * 120.29794 * 180.02562 * 25 24 23
43 43 H 1.07994 * 120.98528 * 180.02562 * 26 25 24
44 44 H 0.96701 * 113.99511 * 179.97438 * 30 28 12
45 45 H 1.08997 * 109.58541 * 6.57350 * 31 9 7
46 46 H 1.09003 * 109.70338 * 246.22354 * 31 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6176 0.0000
4 1 3.1040 1.6963 -1.2125
5 1 1.2854 2.7464 0.0006
6 1 3.1042 1.6962 1.2125
7 6 2.0102 -1.2023 -0.0005
8 1 3.0533 -1.2237 0.2785
9 7 1.3722 -2.3609 -0.3547
10 6 1.8193 -3.6549 0.1786
11 6 2.0749 -4.6089 -0.9925
12 6 0.8194 -4.6886 -1.8638
13 1 -0.0197 -5.0357 -1.2608
14 7 1.0488 -5.6257 -2.9661
15 6 0.8483 -6.9456 -2.7813
16 8 0.4774 -7.3575 -1.7026
17 6 1.0849 -7.9098 -3.9151
18 6 0.7903 -9.3129 -3.4511
19 6 1.6784 -10.2026 -2.9807
20 7 1.0417 -11.3710 -2.6578
21 1 1.4762 -12.1601 -2.2980
22 6 -0.3032 -11.2616 -2.9184
23 7 -1.3253 -12.0959 -2.7814
24 6 -2.5509 -11.7467 -3.1094
25 6 -2.8364 -10.4879 -3.6160
26 6 -1.8125 -9.5747 -3.7815
27 6 -0.5193 -9.9666 -3.4268
28 6 0.5011 -3.3030 -2.4304
29 1 -0.3791 -3.3649 -3.0702
30 8 1.6138 -2.8331 -3.1942
31 6 0.2278 -2.3340 -1.2759
32 1 -0.4849 0.8401 0.0004
33 1 2.7399 -3.5179 0.7459
34 1 1.0479 -4.0686 0.8283
35 1 2.3146 -5.6003 -0.6082
36 1 2.9086 -4.2380 -1.5888
37 1 1.3452 -5.2963 -3.8290
38 1 2.1241 -7.8439 -4.2371
39 1 0.4295 -7.6580 -4.7489
40 1 2.7373 -10.0220 -2.8686
41 1 -3.3537 -12.4577 -2.9811
42 1 -3.8501 -10.2232 -3.8780
43 1 -2.0062 -8.5872 -4.1734
44 1 1.4815 -1.9583 -3.5846
45 1 0.0983 -1.3253 -1.6682
46 1 -0.6758 -2.6396 -0.7485
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001090839424.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:07:50
Heat of formation + Delta-G solvation = 10.562987 kcal
Electronic energy + Delta-G solvation = -29836.950707 eV
Core-core repulsion = 25727.759019 eV
Total energy + Delta-G solvation = -4109.191688 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.164 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.70593 -39.65891 -38.09306 -37.72949 -34.79137 -34.24732 -33.59744 -32.16684
-31.46784 -29.83488 -29.40056 -29.06092 -27.31139 -24.93355 -23.83794 -22.70694
-22.46023 -21.91248 -20.46378 -19.67095 -19.13781 -18.36149 -17.34426 -16.98338
-16.69740 -16.24796 -15.96433 -15.42687 -15.10953 -14.97983 -14.90448 -14.70563
-13.95189 -13.84392 -13.54975 -13.47793 -13.29879 -13.11533 -12.88342 -12.81534
-12.46956 -12.37791 -12.07595 -11.99422 -11.64602 -11.24626 -11.12500 -10.79757
-10.59628 -10.48699 -10.46491 -10.17479 -10.05604 -9.76162 -9.56144 -9.52146
-9.17509 -8.64964 -8.58549 -8.48738 -8.11272 -6.69051 -5.82285 -3.22627
0.86496 1.24828 2.40357 2.62732 2.87998 3.36234 3.42314 3.43920
3.53588 3.80155 4.34005 4.47205 4.48878 4.53963 4.79887 4.82113
4.93512 5.03967 5.12607 5.24234 5.29467 5.32372 5.40307 5.45683
5.48254 5.58931 5.61212 5.79034 5.96694 6.05045 6.12590 6.22526
6.24393 6.31598 6.36225 6.48088 6.57541 6.79455 6.79832 6.89644
6.99791 7.11863 7.17156 7.42887 7.76315 7.83263 7.86772 8.23738
8.42150 8.51577 9.17204 9.80446 10.37475 11.26547
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.025389 B = 0.002210 C = 0.002162
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1102.582633 B =12667.613612 C =12947.545735
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.908 5.908
2 C -0.001 4.001
3 Si 0.903 3.097
4 H -0.284 1.284
5 H -0.291 1.291
6 H -0.283 1.283
7 C -0.243 4.243
8 H 0.065 0.935
9 N -0.583 5.583
10 C 0.148 3.852
11 C -0.135 4.135
12 C 0.163 3.837
13 H 0.088 0.912
14 N -0.721 5.721
15 C 0.507 3.493
16 O -0.535 6.535
17 C -0.067 4.067
18 C -0.140 4.140
19 C 0.074 3.926
20 N -0.581 5.581
21 H 0.419 0.581
22 C 0.285 3.715
23 N -0.502 5.502
24 C 0.134 3.866
25 C -0.204 4.204
26 C -0.025 4.025
27 C -0.133 4.133
28 C 0.073 3.927
29 H 0.043 0.957
30 O -0.560 6.560
31 C 0.145 3.855
32 H 0.254 0.746
33 H 0.056 0.944
34 H 0.019 0.981
35 H 0.051 0.949
36 H 0.069 0.931
37 H 0.401 0.599
38 H 0.101 0.899
39 H 0.098 0.902
40 H 0.177 0.823
41 H 0.159 0.841
42 H 0.136 0.864
43 H 0.131 0.869
44 H 0.375 0.625
45 H 0.095 0.905
46 H 0.027 0.973
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.682 -19.606 -12.537 23.281
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.553 5.553
2 C -0.199 4.199
3 Si 0.733 3.267
4 H -0.211 1.211
5 H -0.217 1.217
6 H -0.209 1.209
7 C -0.373 4.373
8 H 0.083 0.917
9 N -0.305 5.305
10 C 0.021 3.979
11 C -0.175 4.175
12 C 0.059 3.941
13 H 0.106 0.894
14 N -0.372 5.372
15 C 0.292 3.708
16 O -0.411 6.411
17 C -0.108 4.108
18 C -0.148 4.148
19 C -0.052 4.052
20 N -0.187 5.187
21 H 0.257 0.743
22 C 0.052 3.948
23 N -0.216 5.216
24 C -0.032 4.032
25 C -0.225 4.225
26 C -0.051 4.051
27 C -0.140 4.140
28 C 0.012 3.988
29 H 0.060 0.940
30 O -0.365 6.365
31 C 0.018 3.982
32 H 0.064 0.936
33 H 0.075 0.925
34 H 0.037 0.963
35 H 0.070 0.930
36 H 0.087 0.913
37 H 0.235 0.765
38 H 0.119 0.881
39 H 0.117 0.883
40 H 0.194 0.806
41 H 0.176 0.824
42 H 0.154 0.846
43 H 0.149 0.851
44 H 0.221 0.779
45 H 0.113 0.887
46 H 0.045 0.955
Dipole moment (debyes) X Y Z Total
from point charges -0.497 -21.240 -11.144 23.991
hybrid contribution 0.293 2.084 -0.619 2.193
sum -0.203 -19.157 -11.763 22.481
Atomic orbital electron populations
1.70015 1.05211 1.25601 1.54432 1.25019 0.95287 0.98376 1.01246
0.86352 0.78866 0.83282 0.78180 1.21052 1.21739 1.20931 1.19140
0.92689 0.84774 1.40650 0.91725 1.43866 1.35416 1.01575 1.49624
1.20895 0.97821 0.86464 0.92757 1.22277 0.97641 0.99161 0.98403
1.20959 0.99110 0.86498 0.87494 0.89398 1.46226 1.68853 1.06272
1.15887 1.20605 0.77632 0.82892 0.89682 1.90718 1.45693 1.77800
1.26891 1.19975 1.03915 0.89591 0.97289 1.19495 0.91104 0.95058
1.09152 1.21609 0.98274 0.84783 1.00576 1.41450 1.04579 1.15178
1.57469 0.74330 1.18349 0.85634 0.91469 0.99341 1.66451 0.98866
1.35901 1.20344 1.22398 0.91638 0.95059 0.94093 1.21832 1.00144
0.95323 1.05228 1.20950 0.90397 0.99078 0.94712 1.19664 0.94216
0.94905 1.05188 1.22830 0.87604 0.94102 0.94242 0.93965 1.86343
1.41933 1.38164 1.70065 1.21432 0.89634 0.98513 0.88631 0.93596
0.92546 0.96321 0.93013 0.91262 0.76530 0.88087 0.88350 0.80560
0.82421 0.84622 0.85085 0.77875 0.88656 0.95536
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -25.58 11.19 55.49 0.62 -24.96 16
2 C 0.00 -0.04 4.91 -17.43 -0.09 -0.12 16
3 Si 0.90 21.24 29.59 -169.99 -5.03 16.21 16
4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16
6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
7 C -0.24 -6.53 9.59 -15.06 -0.14 -6.68 16
8 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16
9 N -0.58 -14.29 2.94 -172.31 -0.51 -14.79 16
10 C 0.15 3.20 6.52 -3.71 -0.02 3.18 16
11 C -0.13 -2.52 5.51 -26.61 -0.15 -2.67 16
12 C 0.16 2.84 2.20 -67.89 -0.15 2.69 16
13 H 0.09 1.71 7.58 -51.93 -0.39 1.31 16
14 N -0.72 -10.01 5.05 -53.77 -0.27 -10.28 16
15 C 0.51 7.10 7.79 -10.99 -0.09 7.01 16
16 O -0.53 -9.88 15.70 5.56 0.09 -9.79 16
17 C -0.07 -0.65 6.23 -29.04 -0.18 -0.83 16
18 C -0.14 -1.59 4.81 -102.76 -0.49 -2.08 16
19 C 0.07 0.70 11.74 -16.69 -0.20 0.51 16
20 N -0.58 -5.81 6.05 -12.14 -0.07 -5.88 16
21 H 0.42 3.00 8.96 -40.82 -0.37 2.63 16
22 C 0.29 3.64 8.43 -155.69 -1.31 2.33 16
23 N -0.50 -6.35 10.39 -12.27 -0.13 -6.48 16
24 C 0.13 1.36 11.14 -17.50 -0.20 1.17 16
25 C -0.20 -1.97 10.10 -39.44 -0.40 -2.37 16
26 C -0.02 -0.28 10.22 -39.05 -0.40 -0.68 16
27 C -0.13 -1.69 6.37 -105.11 -0.67 -2.36 16
28 C 0.07 1.30 3.38 -26.61 -0.09 1.21 16
29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16
30 O -0.56 -9.55 12.08 -35.23 -0.43 -9.98 16
31 C 0.15 3.27 4.95 -3.71 -0.02 3.25 16
32 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16
33 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16
34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16
36 H 0.07 1.35 7.61 -51.93 -0.40 0.96 16
37 H 0.40 4.70 8.26 -40.82 -0.34 4.36 16
38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16
39 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16
40 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16
41 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16
42 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16
43 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16
44 H 0.37 5.57 9.08 45.56 0.41 5.98 16
45 H 0.10 2.35 6.03 -51.93 -0.31 2.04 16
46 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16
LS Contribution 380.92 15.07 5.74 5.74
Total: -1.00 -35.16 380.92 -10.15 -45.31
By element:
Atomic # 1 Polarization: 16.92 SS G_CDS: -5.58 Total: 11.34 kcal
Atomic # 6 Polarization: 8.16 SS G_CDS: -4.59 Total: 3.57 kcal
Atomic # 7 Polarization: -62.04 SS G_CDS: -0.36 Total: -62.40 kcal
Atomic # 8 Polarization: -19.43 SS G_CDS: -0.34 Total: -19.77 kcal
Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -35.16 -10.15 -45.31 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001090839424.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.874 kcal
(2) G-P(sol) polarization free energy of solvation -35.157 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.717 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.154 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.311 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.563 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds