Wall clock time and date at job start Sat Apr 11 2020 07:07:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31412 * 1
3 3 Si 1.86797 * 120.00388 * 2 1
4 4 H 1.48502 * 109.47311 * 179.97438 * 3 2 1
5 5 H 1.48495 * 109.47121 * 299.99848 * 3 2 1
6 6 H 1.48502 * 109.47105 * 59.99791 * 3 2 1
7 7 C 1.38950 * 119.99640 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99908 * 179.97438 * 7 2 1
9 9 N 1.37097 * 120.00222 * 0.02562 * 7 2 1
10 10 C 1.34780 * 120.00007 * 179.97438 * 9 7 2
11 11 O 1.21289 * 120.00289 * 0.02562 * 10 9 7
12 12 C 1.50701 * 119.99669 * 179.97438 * 10 9 7
13 13 N 1.46906 * 109.46965 * 180.02562 * 12 10 9
14 14 C 1.47475 * 110.99695 * 265.97352 * 13 12 10
15 15 C 1.53521 * 87.93048 * 221.29471 * 14 13 12
16 16 N 1.46500 * 114.16828 * 139.67383 * 15 14 13
17 17 C 1.34772 * 120.00079 * 111.16501 * 16 15 14
18 18 O 1.21276 * 119.99915 * 359.97438 * 17 16 15
19 19 C 1.50704 * 119.99643 * 179.97438 * 17 16 15
20 20 H 1.08998 * 110.25609 * 300.68757 * 19 17 16
21 21 C 1.54343 * 110.29199 * 178.64355 * 19 17 16
22 22 C 1.54616 * 102.26901 * 267.37337 * 21 19 17
23 23 C 1.51216 * 105.13998 * 333.69874 * 22 21 19
24 24 C 1.38741 * 130.69356 * 197.17769 * 23 22 21
25 25 C 1.38581 * 118.55581 * 179.97438 * 24 23 22
26 26 C 1.38223 * 118.99043 * 359.97438 * 25 24 23
27 27 N 1.31688 * 120.80266 * 0.02562 * 26 25 24
28 28 C 1.32297 * 122.03398 * 0.02562 * 27 26 25
29 29 C 1.47472 * 111.00187 * 169.99871 * 13 12 10
30 30 H 0.96999 * 119.99752 * 0.02562 * 1 2 3
31 31 H 0.97001 * 119.99887 * 359.97438 * 9 7 2
32 32 H 1.08993 * 109.47133 * 60.00295 * 12 10 9
33 33 H 1.08996 * 109.47320 * 300.00036 * 12 10 9
34 34 H 1.09003 * 113.47854 * 336.05764 * 14 13 12
35 35 H 1.08998 * 113.48126 * 106.52852 * 14 13 12
36 36 H 1.08999 * 114.34186 * 272.36383 * 15 14 13
37 37 H 0.97008 * 119.99368 * 291.15090 * 16 15 14
38 38 H 1.09002 * 110.82295 * 25.63188 * 21 19 17
39 39 H 1.09001 * 110.82217 * 149.17771 * 21 19 17
40 40 H 1.09001 * 110.29122 * 214.78482 * 22 21 19
41 41 H 1.09008 * 110.40232 * 92.66855 * 22 21 19
42 42 H 1.07998 * 120.71770 * 359.93907 * 24 23 22
43 43 H 1.08001 * 120.50022 * 180.02562 * 25 24 23
44 44 H 1.08000 * 119.59877 * 180.02562 * 26 25 24
45 45 H 1.08998 * 113.48140 * 253.47102 * 29 13 12
46 46 H 1.09007 * 113.47537 * 23.93571 * 29 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2482 1.6176 0.0000
4 1 3.7082 1.3462 0.0006
5 1 1.8896 2.3963 -1.2125
6 1 1.8895 2.3964 1.2125
7 6 2.0088 -1.2034 0.0005
8 1 3.0888 -1.2034 0.0001
9 7 1.3233 -2.3907 0.0005
10 6 1.9972 -3.5579 0.0005
11 8 3.2100 -3.5580 0.0010
12 6 1.2435 -4.8630 0.0011
13 7 2.1981 -5.9796 0.0016
14 6 2.4680 -6.4447 -1.3716
15 6 2.4115 -7.8824 -0.8362
16 7 1.7247 -8.8258 -1.7220
17 6 2.4238 -9.7921 -2.3496
18 8 3.6216 -9.8804 -2.1813
19 6 1.7172 -10.7628 -3.2603
20 1 0.9509 -11.3079 -2.7092
21 6 2.7301 -11.7465 -3.8835
22 6 3.0956 -11.0443 -5.2116
23 6 1.8937 -10.1921 -5.5516
24 6 1.5140 -9.5995 -6.7473
25 6 0.3428 -8.8593 -6.7772
26 6 -0.4030 -8.7384 -5.6197
27 7 -0.0120 -9.3149 -4.5022
28 6 1.0998 -10.0286 -4.4325
29 6 1.5110 -7.2623 0.2413
30 1 -0.4850 0.8401 -0.0004
31 1 0.3533 -2.3906 0.0005
32 1 0.6166 -4.9209 -0.8886
33 1 0.6172 -4.9205 0.8913
34 1 1.6680 -6.2113 -2.0743
35 1 3.4522 -6.1576 -1.7418
36 1 3.3625 -8.2595 -0.4602
37 1 0.7666 -8.7549 -1.8567
38 1 3.6077 -11.8545 -3.2462
39 1 2.2650 -12.7143 -4.0715
40 1 3.2695 -11.7827 -5.9943
41 1 3.9783 -10.4183 -5.0801
42 1 2.1184 -9.7121 -7.6352
43 1 0.0174 -8.3848 -7.6912
44 1 -1.3177 -8.1642 -5.6321
45 1 1.6840 -7.6680 1.2380
46 1 0.4555 -7.2470 -0.0309
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001714944647.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:07:06
Heat of formation + Delta-G solvation = 8.411436 kcal
Electronic energy + Delta-G solvation = -29197.381305 eV
Core-core repulsion = 25088.096318 eV
Total energy + Delta-G solvation = -4109.284987 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.164 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.47636 -40.41653 -39.12115 -37.71019 -36.22081 -34.24752 -33.80542 -33.01654
-31.24163 -30.06585 -29.68272 -28.48423 -25.89163 -25.54190 -24.00707 -23.76971
-22.58977 -21.78873 -20.48930 -19.92835 -19.22348 -17.88570 -17.82403 -17.16406
-16.54861 -16.46207 -16.08199 -15.72157 -15.33907 -15.08638 -14.82674 -14.50603
-14.26303 -14.16079 -13.88778 -13.75153 -13.61297 -13.26509 -13.11860 -12.86035
-12.60068 -12.36199 -12.28996 -12.14982 -11.68647 -11.59630 -11.54252 -11.43636
-11.16481 -11.06962 -10.62667 -10.39620 -10.32303 -10.19706 -10.03660 -9.70890
-9.48627 -9.14103 -9.07514 -8.81195 -8.19440 -7.93399 -6.39363 -3.79807
0.67318 0.89543 2.32729 2.88179 3.17949 3.28183 3.35989 3.39449
3.56710 3.92985 3.94781 4.05082 4.24761 4.34701 4.41887 4.45641
4.54668 4.57396 4.75050 4.84126 4.85861 4.97078 5.00382 5.17123
5.18678 5.21891 5.32867 5.36848 5.37543 5.46183 5.60665 5.64695
5.67833 5.70695 5.70825 5.79513 5.87044 5.90533 6.08218 6.25753
6.29457 6.36172 6.52298 7.13046 7.31674 7.57684 7.57916 8.00356
8.09030 8.65052 9.21368 9.57383 10.10067 10.78750
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.014585 B = 0.002215 C = 0.002051
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1919.267174 B =12638.278485 C =13650.902748
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.904 5.904
2 C 0.021 3.979
3 Si 0.929 3.071
4 H -0.268 1.268
5 H -0.282 1.282
6 H -0.281 1.281
7 C -0.296 4.296
8 H 0.103 0.897
9 N -0.568 5.568
10 C 0.447 3.553
11 O -0.573 6.573
12 C 0.011 3.989
13 N -0.433 5.433
14 C -0.007 4.007
15 C 0.117 3.883
16 N -0.711 5.711
17 C 0.529 3.471
18 O -0.531 6.531
19 C -0.060 4.060
20 H 0.116 0.884
21 C -0.104 4.104
22 C -0.081 4.081
23 C -0.137 4.137
24 C -0.066 4.066
25 C -0.166 4.166
26 C 0.103 3.897
27 N -0.474 5.474
28 C 0.117 3.883
29 C -0.013 4.013
30 H 0.270 0.730
31 H 0.391 0.609
32 H 0.059 0.941
33 H 0.090 0.910
34 H 0.069 0.931
35 H 0.092 0.908
36 H 0.130 0.870
37 H 0.406 0.594
38 H 0.103 0.897
39 H 0.082 0.918
40 H 0.081 0.919
41 H 0.090 0.910
42 H 0.134 0.866
43 H 0.139 0.861
44 H 0.161 0.839
45 H 0.094 0.906
46 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.958 -25.215 -12.299 28.332
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.546 5.546
2 C -0.181 4.181
3 Si 0.756 3.244
4 H -0.192 1.192
5 H -0.208 1.208
6 H -0.207 1.207
7 C -0.426 4.426
8 H 0.121 0.879
9 N -0.205 5.205
10 C 0.232 3.768
11 O -0.456 6.456
12 C -0.121 4.121
13 N -0.155 5.155
14 C -0.137 4.137
15 C 0.012 3.988
16 N -0.362 5.362
17 C 0.314 3.686
18 O -0.407 6.407
19 C -0.083 4.083
20 H 0.134 0.866
21 C -0.142 4.142
22 C -0.118 4.118
23 C -0.139 4.139
24 C -0.092 4.092
25 C -0.186 4.186
26 C -0.054 4.054
27 N -0.182 5.182
28 C -0.020 4.020
29 C -0.143 4.143
30 H 0.080 0.920
31 H 0.224 0.776
32 H 0.077 0.923
33 H 0.108 0.892
34 H 0.087 0.913
35 H 0.110 0.890
36 H 0.148 0.852
37 H 0.241 0.759
38 H 0.121 0.879
39 H 0.101 0.899
40 H 0.100 0.900
41 H 0.108 0.892
42 H 0.152 0.848
43 H 0.157 0.843
44 H 0.178 0.822
45 H 0.112 0.888
46 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -2.373 -24.740 -10.966 27.165
hybrid contribution -1.277 0.967 -1.469 2.173
sum -3.650 -23.773 -12.435 27.076
Atomic orbital electron populations
1.69621 1.05918 1.27962 1.51059 1.25250 0.95641 0.99672 0.97491
0.85806 0.79746 0.81174 0.77674 1.19217 1.20800 1.20749 1.19750
0.93379 0.82211 1.47230 0.87917 1.41872 1.09113 1.04574 1.64978
1.19647 0.88394 0.84363 0.84405 1.90533 1.13641 1.86929 1.54490
1.22502 0.94571 0.92994 1.02076 1.68791 1.30310 0.99906 1.16533
1.24377 1.03507 0.93479 0.92375 1.22727 0.97924 0.87691 0.90465
1.45969 1.12084 1.31299 1.46853 1.20121 0.87411 0.81113 0.79940
1.90707 1.14279 1.72479 1.63234 1.20781 0.98547 0.95338 0.93585
0.86604 1.22330 0.99149 0.96650 0.96109 1.21059 0.95463 0.97733
0.97594 1.21503 0.98218 0.99599 0.94561 1.21109 0.95955 0.94877
0.97236 1.22143 0.95950 1.00046 1.00426 1.22661 0.99318 0.96023
0.87409 1.66775 1.14679 1.07619 1.29138 1.21299 0.90982 0.95490
0.94268 1.24312 0.97400 0.92130 1.00472 0.91994 0.77578 0.92258
0.89211 0.91321 0.88985 0.85212 0.75878 0.87853 0.89889 0.90017
0.89162 0.84798 0.84305 0.82205 0.88801 0.91071
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -24.91 13.05 55.50 0.72 -24.18 16
2 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16
3 Si 0.93 21.42 29.55 -169.99 -5.02 16.39 16
4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16
5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16
6 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16
7 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16
8 H 0.10 3.09 7.16 -52.48 -0.38 2.71 16
9 N -0.57 -14.75 5.29 -10.96 -0.06 -14.81 16
10 C 0.45 10.96 7.85 -10.98 -0.09 10.88 16
11 O -0.57 -16.35 16.01 5.55 0.09 -16.26 16
12 C 0.01 0.20 5.30 -4.97 -0.03 0.17 16
13 N -0.43 -7.44 5.82 -246.12 -1.43 -8.87 16
14 C -0.01 -0.11 7.52 -7.55 -0.06 -0.17 16
15 C 0.12 1.51 4.60 -67.71 -0.31 1.20 16
16 N -0.71 -7.77 5.33 -53.54 -0.29 -8.06 16
17 C 0.53 6.11 7.16 -10.99 -0.08 6.04 16
18 O -0.53 -7.78 15.05 5.56 0.08 -7.70 16
19 C -0.06 -0.52 3.26 -91.84 -0.30 -0.82 16
20 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16
21 C -0.10 -0.75 6.41 -25.18 -0.16 -0.92 16
22 C -0.08 -0.61 6.76 -26.78 -0.18 -0.79 16
23 C -0.14 -1.22 6.16 -104.21 -0.64 -1.86 16
24 C -0.07 -0.51 10.17 -39.27 -0.40 -0.91 16
25 C -0.17 -1.21 10.12 -39.46 -0.40 -1.61 16
26 C 0.10 0.87 11.18 -17.62 -0.20 0.67 16
27 N -0.47 -4.78 10.35 -9.19 -0.10 -4.87 16
28 C 0.12 1.14 6.56 -82.04 -0.54 0.61 16
29 C -0.01 -0.16 7.45 -7.55 -0.06 -0.22 16
30 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16
31 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16
32 H 0.06 0.96 7.30 -51.93 -0.38 0.58 16
33 H 0.09 1.46 8.08 -51.93 -0.42 1.04 16
34 H 0.07 1.02 7.42 -51.93 -0.39 0.64 16
35 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16
36 H 0.13 1.85 7.45 -51.93 -0.39 1.46 16
37 H 0.41 3.85 8.75 -40.82 -0.36 3.49 16
38 H 0.10 0.85 6.95 -51.93 -0.36 0.48 16
39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16
41 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16
42 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16
43 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16
44 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16
45 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16
46 H 0.07 0.75 7.90 -51.92 -0.41 0.34 16
LS Contribution 387.68 15.07 5.84 5.84
Total: -1.00 -35.53 387.68 -10.17 -45.69
By element:
Atomic # 1 Polarization: 19.02 SS G_CDS: -6.34 Total: 12.68 kcal
Atomic # 6 Polarization: 7.82 SS G_CDS: -3.67 Total: 4.15 kcal
Atomic # 7 Polarization: -59.65 SS G_CDS: -1.15 Total: -60.80 kcal
Atomic # 8 Polarization: -24.13 SS G_CDS: 0.17 Total: -23.96 kcal
Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -35.53 -10.17 -45.69 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714944647.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.104 kcal
(2) G-P(sol) polarization free energy of solvation -35.527 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.578 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.693 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.411 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds