Wall clock time and date at job start Sat Apr 11 2020 07:07:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31412 * 1
3 3 Si 1.86797 * 120.00388 * 2 1
4 4 H 1.48502 * 109.47311 * 179.97438 * 3 2 1
5 5 H 1.48495 * 109.47121 * 299.99848 * 3 2 1
6 6 H 1.48502 * 109.47105 * 59.99791 * 3 2 1
7 7 C 1.38950 * 119.99640 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99908 * 179.97438 * 7 2 1
9 9 N 1.37097 * 120.00222 * 0.02562 * 7 2 1
10 10 C 1.34780 * 120.00007 * 179.97438 * 9 7 2
11 11 O 1.21289 * 120.00289 * 0.02562 * 10 9 7
12 12 C 1.50701 * 119.99669 * 179.97438 * 10 9 7
13 13 N 1.46906 * 109.46965 * 180.02562 * 12 10 9
14 14 C 1.47475 * 110.99695 * 265.97352 * 13 12 10
15 15 C 1.53521 * 87.93048 * 221.29471 * 14 13 12
16 16 N 1.46500 * 114.16828 * 139.67383 * 15 14 13
17 17 C 1.34772 * 120.00079 * 111.16501 * 16 15 14
18 18 O 1.21276 * 119.99915 * 359.97438 * 17 16 15
19 19 C 1.50704 * 119.99643 * 179.97438 * 17 16 15
20 20 H 1.08998 * 110.25609 * 300.68757 * 19 17 16
21 21 C 1.54343 * 110.29199 * 178.64355 * 19 17 16
22 22 C 1.54616 * 102.26901 * 267.37337 * 21 19 17
23 23 C 1.51216 * 105.13998 * 333.69874 * 22 21 19
24 24 C 1.38741 * 130.69356 * 197.17769 * 23 22 21
25 25 C 1.38581 * 118.55581 * 179.97438 * 24 23 22
26 26 C 1.38223 * 118.99043 * 359.97438 * 25 24 23
27 27 N 1.31688 * 120.80266 * 0.02562 * 26 25 24
28 28 C 1.32297 * 122.03398 * 0.02562 * 27 26 25
29 29 C 1.47472 * 111.00187 * 169.99871 * 13 12 10
30 30 H 0.96999 * 119.99752 * 0.02562 * 1 2 3
31 31 H 0.97001 * 119.99887 * 359.97438 * 9 7 2
32 32 H 1.08993 * 109.47133 * 60.00295 * 12 10 9
33 33 H 1.08996 * 109.47320 * 300.00036 * 12 10 9
34 34 H 1.09003 * 113.47854 * 336.05764 * 14 13 12
35 35 H 1.08998 * 113.48126 * 106.52852 * 14 13 12
36 36 H 1.08999 * 114.34186 * 272.36383 * 15 14 13
37 37 H 0.97008 * 119.99368 * 291.15090 * 16 15 14
38 38 H 1.09002 * 110.82295 * 25.63188 * 21 19 17
39 39 H 1.09001 * 110.82217 * 149.17771 * 21 19 17
40 40 H 1.09001 * 110.29122 * 214.78482 * 22 21 19
41 41 H 1.09008 * 110.40232 * 92.66855 * 22 21 19
42 42 H 1.07998 * 120.71770 * 359.93907 * 24 23 22
43 43 H 1.08001 * 120.50022 * 180.02562 * 25 24 23
44 44 H 1.08000 * 119.59877 * 180.02562 * 26 25 24
45 45 H 1.08998 * 113.48140 * 253.47102 * 29 13 12
46 46 H 1.09007 * 113.47537 * 23.93571 * 29 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2482 1.6176 0.0000
4 1 3.7082 1.3462 0.0006
5 1 1.8896 2.3963 -1.2125
6 1 1.8895 2.3964 1.2125
7 6 2.0088 -1.2034 0.0005
8 1 3.0888 -1.2034 0.0001
9 7 1.3233 -2.3907 0.0005
10 6 1.9972 -3.5579 0.0005
11 8 3.2100 -3.5580 0.0010
12 6 1.2435 -4.8630 0.0011
13 7 2.1981 -5.9796 0.0016
14 6 2.4680 -6.4447 -1.3716
15 6 2.4115 -7.8824 -0.8362
16 7 1.7247 -8.8258 -1.7220
17 6 2.4238 -9.7921 -2.3496
18 8 3.6216 -9.8804 -2.1813
19 6 1.7172 -10.7628 -3.2603
20 1 0.9509 -11.3079 -2.7092
21 6 2.7301 -11.7465 -3.8835
22 6 3.0956 -11.0443 -5.2116
23 6 1.8937 -10.1921 -5.5516
24 6 1.5140 -9.5995 -6.7473
25 6 0.3428 -8.8593 -6.7772
26 6 -0.4030 -8.7384 -5.6197
27 7 -0.0120 -9.3149 -4.5022
28 6 1.0998 -10.0286 -4.4325
29 6 1.5110 -7.2623 0.2413
30 1 -0.4850 0.8401 -0.0004
31 1 0.3533 -2.3906 0.0005
32 1 0.6166 -4.9209 -0.8886
33 1 0.6172 -4.9205 0.8913
34 1 1.6680 -6.2113 -2.0743
35 1 3.4522 -6.1576 -1.7418
36 1 3.3625 -8.2595 -0.4602
37 1 0.7666 -8.7549 -1.8567
38 1 3.6077 -11.8545 -3.2462
39 1 2.2650 -12.7143 -4.0715
40 1 3.2695 -11.7827 -5.9943
41 1 3.9783 -10.4183 -5.0801
42 1 2.1184 -9.7121 -7.6352
43 1 0.0174 -8.3848 -7.6912
44 1 -1.3177 -8.1642 -5.6321
45 1 1.6840 -7.6680 1.2380
46 1 0.4555 -7.2470 -0.0309
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001714944647.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:07:06
Heat of formation + Delta-G solvation = -19.637123 kcal
Electronic energy + Delta-G solvation = -29198.597581 eV
Core-core repulsion = 25088.096318 eV
Total energy + Delta-G solvation = -4110.501263 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.164 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-42.21784 -41.50308 -40.20151 -39.49464 -36.89131 -35.98942 -35.18943 -33.65606
-33.30488 -31.34951 -30.31884 -29.26102 -27.31817 -27.01728 -25.35798 -24.46721
-23.44968 -22.47215 -21.48425 -21.12267 -20.79085 -19.93216 -18.64450 -18.00655
-17.77016 -17.53344 -17.09978 -16.72139 -16.58841 -16.31411 -16.21777 -15.74661
-15.61713 -15.38847 -14.89860 -14.83841 -14.51076 -14.34658 -14.17689 -13.80738
-13.78326 -13.71938 -13.53707 -13.06826 -12.98049 -12.77997 -12.72700 -12.46002
-12.37824 -12.20667 -12.13608 -12.08877 -11.87696 -11.52837 -11.28039 -10.67948
-10.43796 -10.33902 -10.15176 -10.03127 -9.85924 -9.67962 -8.48827 -5.97487
0.06035 0.29755 1.34596 1.39702 1.43832 1.54073 1.97057 2.03247
2.28031 2.75057 2.86188 2.93551 3.16783 3.26534 3.34817 3.48254
3.66432 3.72924 3.81052 3.94513 4.03041 4.06988 4.15082 4.23010
4.24155 4.29496 4.34743 4.44707 4.48949 4.61365 4.63263 4.64028
4.72466 4.81005 4.87270 4.94601 5.08853 5.15265 5.22493 5.25737
5.29066 5.37560 5.39610 5.73436 5.82594 6.03409 6.42703 6.58849
6.95220 7.11336 7.12041 7.54048 8.11173 8.68943
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.014585 B = 0.002215 C = 0.002051
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1919.267174 B =12638.278485 C =13650.902748
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.919 5.919
2 C -0.012 4.012
3 Si 0.992 3.008
4 H -0.276 1.276
5 H -0.269 1.269
6 H -0.269 1.269
7 C -0.333 4.333
8 H 0.075 0.925
9 N -0.574 5.574
10 C 0.440 3.560
11 O -0.621 6.621
12 C 0.025 3.975
13 N -0.469 5.469
14 C -0.010 4.010
15 C 0.132 3.868
16 N -0.701 5.701
17 C 0.526 3.474
18 O -0.567 6.567
19 C -0.055 4.055
20 H 0.137 0.863
21 C -0.101 4.101
22 C -0.080 4.080
23 C -0.151 4.151
24 C -0.075 4.075
25 C -0.164 4.164
26 C 0.087 3.913
27 N -0.492 5.492
28 C 0.098 3.902
29 C 0.003 3.997
30 H 0.278 0.722
31 H 0.397 0.603
32 H 0.084 0.916
33 H 0.116 0.884
34 H 0.078 0.922
35 H 0.058 0.942
36 H 0.113 0.887
37 H 0.416 0.584
38 H 0.090 0.910
39 H 0.109 0.891
40 H 0.104 0.896
41 H 0.072 0.928
42 H 0.155 0.845
43 H 0.165 0.835
44 H 0.180 0.820
45 H 0.108 0.892
46 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.940 -26.057 -13.131 29.777
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.561 5.561
2 C -0.212 4.212
3 Si 0.816 3.184
4 H -0.201 1.201
5 H -0.194 1.194
6 H -0.194 1.194
7 C -0.463 4.463
8 H 0.093 0.907
9 N -0.212 5.212
10 C 0.227 3.773
11 O -0.507 6.507
12 C -0.107 4.107
13 N -0.192 5.192
14 C -0.141 4.141
15 C 0.025 3.975
16 N -0.352 5.352
17 C 0.313 3.687
18 O -0.446 6.446
19 C -0.077 4.077
20 H 0.154 0.846
21 C -0.139 4.139
22 C -0.117 4.117
23 C -0.153 4.153
24 C -0.100 4.100
25 C -0.184 4.184
26 C -0.070 4.070
27 N -0.201 5.201
28 C -0.039 4.039
29 C -0.126 4.126
30 H 0.088 0.912
31 H 0.231 0.769
32 H 0.102 0.898
33 H 0.134 0.866
34 H 0.096 0.904
35 H 0.076 0.924
36 H 0.131 0.869
37 H 0.253 0.747
38 H 0.109 0.891
39 H 0.128 0.872
40 H 0.122 0.878
41 H 0.090 0.910
42 H 0.173 0.827
43 H 0.183 0.817
44 H 0.197 0.803
45 H 0.126 0.874
46 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -4.417 -25.601 -11.800 28.534
hybrid contribution -0.666 1.225 -1.268 1.884
sum -5.083 -24.376 -13.068 28.121
Atomic orbital electron populations
1.69670 1.06728 1.29260 1.50394 1.26020 0.96585 1.02303 0.96270
0.84888 0.77921 0.77142 0.78487 1.20081 1.19395 1.19383 1.19664
0.92567 0.84113 1.49957 0.90725 1.41930 1.09288 1.04623 1.65375
1.20810 0.88247 0.86019 0.82190 1.90498 1.16093 1.87940 1.56162
1.22381 0.94135 0.89737 1.04420 1.68717 1.31671 1.01485 1.17336
1.24380 1.01999 0.95457 0.92222 1.22353 0.97890 0.86581 0.90651
1.45857 1.12435 1.30643 1.46286 1.20697 0.87068 0.81242 0.79695
1.90694 1.15990 1.73475 1.64449 1.20814 0.99018 0.94767 0.93081
0.84556 1.22363 0.98510 0.97485 0.95524 1.21065 0.94298 0.97879
0.98499 1.21766 0.98498 1.00027 0.94985 1.21477 0.96394 0.94484
0.97693 1.22481 0.95423 0.99340 1.01106 1.23119 1.00252 0.96138
0.87509 1.66765 1.15032 1.08173 1.30088 1.21438 0.91460 0.96278
0.94770 1.24326 0.98438 0.88839 1.00979 0.91232 0.76911 0.89798
0.86587 0.90390 0.92379 0.86875 0.74676 0.89111 0.87236 0.87786
0.90997 0.82692 0.81724 0.80347 0.87351 0.88095
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -50.01 13.05 21.66 0.28 -49.73 16
2 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16
3 Si 0.99 43.76 29.55 68.60 2.03 45.79 16
4 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16
5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16
6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16
7 C -0.33 -19.49 9.68 84.04 0.81 -18.67 16
8 H 0.07 4.71 7.16 -2.91 -0.02 4.68 16
9 N -0.57 -30.29 5.29 -306.98 -1.62 -31.92 16
10 C 0.44 21.94 7.85 87.66 0.69 22.63 16
11 O -0.62 -36.81 16.01 -3.06 -0.05 -36.86 16
12 C 0.03 0.88 5.30 85.56 0.45 1.33 16
13 N -0.47 -15.85 5.82 -932.57 -5.43 -21.28 16
14 C -0.01 -0.32 7.52 83.58 0.63 0.31 16
15 C 0.13 3.33 4.60 45.45 0.21 3.54 16
16 N -0.70 -14.63 5.33 -441.69 -2.35 -16.99 16
17 C 0.53 11.99 7.16 87.66 0.63 12.62 16
18 O -0.57 -17.05 15.05 -3.02 -0.05 -17.10 16
19 C -0.05 -0.89 3.26 -11.58 -0.04 -0.93 16
20 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16
21 C -0.10 -1.35 6.41 31.60 0.20 -1.14 16
22 C -0.08 -1.13 6.76 30.56 0.21 -0.92 16
23 C -0.15 -2.52 6.16 -19.59 -0.12 -2.64 16
24 C -0.07 -1.03 10.17 22.47 0.23 -0.80 16
25 C -0.16 -2.06 10.12 22.35 0.23 -1.83 16
26 C 0.09 1.32 11.18 84.71 0.95 2.27 16
27 N -0.49 -9.23 10.35 -182.98 -1.89 -11.12 16
28 C 0.10 1.79 6.56 42.72 0.28 2.07 16
29 C 0.00 0.07 7.45 83.57 0.62 0.69 16
30 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16
31 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16
32 H 0.08 2.54 7.30 -2.39 -0.02 2.52 16
33 H 0.12 3.46 8.08 -2.39 -0.02 3.45 16
34 H 0.08 2.28 7.42 -2.39 -0.02 2.26 16
35 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16
36 H 0.11 3.31 7.45 -2.39 -0.02 3.29 16
37 H 0.42 7.10 8.75 -92.70 -0.81 6.29 16
38 H 0.09 1.47 6.95 -2.39 -0.02 1.45 16
39 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16
40 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16
41 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16
42 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16
43 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16
44 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16
45 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16
46 H 0.10 1.72 7.90 -2.38 -0.02 1.71 16
Total: -1.00 -79.65 387.68 -3.15 -82.80
By element:
Atomic # 1 Polarization: 38.58 SS G_CDS: -0.51 Total: 38.07 kcal
Atomic # 6 Polarization: 11.90 SS G_CDS: 6.44 Total: 18.34 kcal
Atomic # 7 Polarization: -120.02 SS G_CDS: -11.02 Total: -131.03 kcal
Atomic # 8 Polarization: -53.87 SS G_CDS: -0.09 Total: -53.96 kcal
Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal
Total: -79.65 -3.15 -82.80 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714944647.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.161 kcal
(2) G-P(sol) polarization free energy of solvation -79.650 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.489 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.148 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.798 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.637 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds