Wall clock time and date at job start Sat Apr 11 2020 07:09:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31613 * 1
3 3 Si 1.86803 * 120.00052 * 2 1
4 4 H 1.48500 * 109.46888 * 179.97438 * 3 2 1
5 5 H 1.48504 * 109.46828 * 299.99701 * 3 2 1
6 6 H 1.48499 * 109.47241 * 59.99689 * 3 2 1
7 7 C 1.38809 * 119.99726 * 179.97438 * 2 1 3
8 8 H 1.08008 * 119.99903 * 180.02562 * 7 2 1
9 9 N 1.36938 * 120.00420 * 0.02562 * 7 2 1
10 10 C 1.46499 * 120.00032 * 179.97438 * 9 7 2
11 11 C 1.53001 * 109.46979 * 179.97438 * 10 9 7
12 12 C 1.53000 * 109.47237 * 179.97438 * 11 10 9
13 13 O 1.42902 * 109.47096 * 179.97438 * 12 11 10
14 14 C 1.42897 * 113.99833 * 180.02562 * 13 12 11
15 15 C 1.53004 * 109.47131 * 180.02562 * 14 13 12
16 16 N 1.46501 * 109.46972 * 64.99898 * 15 14 13
17 17 C 1.34781 * 120.00102 * 180.02562 * 16 15 14
18 18 O 1.21546 * 119.99668 * 359.97438 * 17 16 15
19 19 C 1.47903 * 120.00052 * 180.02562 * 17 16 15
20 20 N 1.32377 * 120.63728 * 354.48560 * 19 17 16
21 21 N 1.28094 * 123.18174 * 180.02562 * 20 19 17
22 22 C 1.31801 * 123.49463 * 359.42813 * 21 20 19
23 23 C 1.40401 * 119.13639 * 0.84255 * 22 21 20
24 24 C 1.40234 * 122.73819 * 179.13939 * 23 22 21
25 25 C 1.36258 * 119.36968 * 180.02562 * 24 23 22
26 26 C 1.39382 * 121.07417 * 0.02562 * 25 24 23
27 27 C 1.36369 * 121.08673 * 0.02562 * 26 25 24
28 28 C 1.39828 * 119.41728 * 0.25570 * 27 26 25
29 29 H 0.97004 * 120.00209 * 0.02562 * 1 2 3
30 30 H 0.97000 * 119.99695 * 359.97438 * 9 7 2
31 31 H 1.09003 * 109.47194 * 59.99991 * 10 9 7
32 32 H 1.08996 * 109.46962 * 299.99802 * 10 9 7
33 33 H 1.09003 * 109.47117 * 60.00003 * 11 10 9
34 34 H 1.09004 * 109.47021 * 300.00044 * 11 10 9
35 35 H 1.09003 * 109.46588 * 60.00260 * 12 11 10
36 36 H 1.08992 * 109.47114 * 300.00379 * 12 11 10
37 37 H 1.08996 * 109.47594 * 59.99997 * 14 13 12
38 38 H 1.09000 * 109.47069 * 300.00133 * 14 13 12
39 39 H 1.08992 * 109.47072 * 305.00116 * 15 14 13
40 40 H 1.09001 * 109.47177 * 184.99484 * 15 14 13
41 41 H 0.96999 * 120.00317 * 359.97438 * 16 15 14
42 42 H 1.08001 * 120.42545 * 180.02562 * 22 21 20
43 43 H 1.08001 * 120.31547 * 0.04233 * 24 23 22
44 44 H 1.07995 * 119.46572 * 180.02562 * 25 24 23
45 45 H 1.07999 * 119.45502 * 179.97438 * 26 25 24
46 46 H 1.08001 * 120.28629 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.7101 1.3463 0.0006
5 1 1.8914 2.3964 -1.2126
6 1 1.8914 2.3965 1.2124
7 6 2.0101 -1.2021 0.0005
8 1 3.0902 -1.2022 0.0010
9 7 1.3255 -2.3881 0.0005
10 6 2.0580 -3.6568 0.0005
11 6 1.0637 -4.8197 0.0012
12 6 1.8287 -6.1447 0.0005
13 8 0.9000 -7.2309 0.0017
14 6 1.5146 -8.5210 0.0018
15 6 0.4316 -9.6018 0.0025
16 7 -0.3269 -9.5338 -1.2490
17 6 -1.3388 -10.3959 -1.4715
18 8 -1.6217 -11.2300 -0.6339
19 6 -2.1041 -10.3277 -2.7352
20 7 -1.8791 -9.3588 -3.6087
21 7 -2.5129 -9.2526 -4.7167
22 6 -3.4441 -10.1002 -5.1061
23 6 -3.7854 -11.1735 -4.2676
24 6 -4.7763 -12.1090 -4.5985
25 6 -5.0525 -13.1243 -3.7327
26 6 -4.3669 -13.2468 -2.5254
27 6 -3.3984 -12.3542 -2.1719
28 6 -3.0923 -11.2960 -3.0331
29 1 -0.4851 0.8401 -0.0004
30 1 0.3555 -2.3881 0.0005
31 1 2.6847 -3.7145 0.8905
32 1 2.6846 -3.7145 -0.8894
33 1 0.4367 -4.7622 -0.8886
34 1 0.4374 -4.7617 0.8914
35 1 2.4559 -6.2025 0.8901
36 1 2.4547 -6.2024 -0.8898
37 1 2.1354 -8.6277 0.8913
38 1 2.1340 -8.6284 -0.8886
39 1 -0.2416 -9.4410 0.8445
40 1 0.8976 -10.5831 0.0921
41 1 -0.1013 -8.8680 -1.9173
42 1 -3.9474 -9.9633 -6.0518
43 1 -5.3152 -12.0256 -5.5307
44 1 -5.8150 -13.8458 -3.9861
45 1 -4.6073 -14.0615 -1.8585
46 1 -2.8755 -12.4613 -1.2330
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001725451804.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:09:21
Heat of formation + Delta-G solvation = 6.658137 kcal
Electronic energy + Delta-G solvation = -27847.306264 eV
Core-core repulsion = 23737.945248 eV
Total energy + Delta-G solvation = -4109.361015 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.164 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.95597 -39.82983 -38.51716 -38.18049 -35.53133 -34.80628 -33.89078 -32.33287
-32.28870 -31.12505 -30.10923 -29.00772 -26.20098 -25.02348 -24.76894 -23.68303
-22.59511 -22.48650 -21.43382 -20.80104 -19.10118 -18.62706 -17.90892 -17.02333
-16.91982 -16.74128 -16.46408 -15.97623 -15.76608 -15.21200 -15.15115 -14.93453
-14.57237 -14.43242 -14.17976 -14.08820 -13.57417 -13.29649 -13.08363 -13.01006
-12.94933 -12.83282 -12.22641 -12.07813 -11.89112 -11.69058 -11.29401 -11.06934
-10.89285 -10.72385 -10.65996 -10.57463 -10.23035 -10.07436 -9.99643 -9.89378
-9.68587 -9.60906 -9.47272 -8.97907 -8.84758 -6.89085 -5.72893 -3.02043
-0.53774 0.10042 1.07684 2.14490 2.58194 2.66847 3.42518 3.46082
3.47394 3.50467 3.53660 3.56220 3.85000 3.95739 4.08080 4.19243
4.50871 4.54600 4.61091 4.66647 4.68669 4.88183 4.96026 5.11439
5.12315 5.21535 5.26565 5.30000 5.39608 5.40809 5.56553 5.60439
5.62853 5.67877 5.80125 5.82639 5.99271 6.05964 6.12347 6.23583
6.30065 6.40253 6.85821 6.90305 7.07584 7.18487 7.71856 7.73195
8.26092 8.45821 9.56764 10.15088 10.49790 11.50146
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.015232 B = 0.001673 C = 0.001551
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1837.805374 B =16734.503901 C =18046.081039
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C -0.015 4.015
3 Si 0.908 3.092
4 H -0.280 1.280
5 H -0.291 1.291
6 H -0.291 1.291
7 C -0.240 4.240
8 H 0.071 0.929
9 N -0.733 5.733
10 C 0.157 3.843
11 C -0.125 4.125
12 C 0.069 3.931
13 O -0.386 6.386
14 C 0.047 3.953
15 C 0.121 3.879
16 N -0.695 5.695
17 C 0.581 3.419
18 O -0.531 6.531
19 C 0.065 3.935
20 N -0.223 5.223
21 N -0.261 5.261
22 C 0.105 3.895
23 C -0.087 4.087
24 C -0.095 4.095
25 C -0.096 4.096
26 C -0.100 4.100
27 C -0.092 4.092
28 C -0.046 4.046
29 H 0.255 0.745
30 H 0.385 0.615
31 H 0.019 0.981
32 H 0.019 0.981
33 H 0.071 0.929
34 H 0.069 0.931
35 H 0.049 0.951
36 H 0.050 0.950
37 H 0.069 0.931
38 H 0.057 0.943
39 H 0.083 0.917
40 H 0.087 0.913
41 H 0.418 0.582
42 H 0.183 0.817
43 H 0.142 0.858
44 H 0.134 0.866
45 H 0.135 0.865
46 H 0.174 0.826
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.680 -33.972 -8.085 35.756
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.581 5.581
2 C -0.211 4.211
3 Si 0.739 3.261
4 H -0.205 1.205
5 H -0.218 1.218
6 H -0.219 1.219
7 C -0.371 4.371
8 H 0.089 0.911
9 N -0.377 5.377
10 C 0.029 3.971
11 C -0.163 4.163
12 C -0.008 4.008
13 O -0.305 6.305
14 C -0.030 4.030
15 C -0.003 4.003
16 N -0.347 5.347
17 C 0.364 3.636
18 O -0.407 6.407
19 C -0.092 4.092
20 N -0.060 5.060
21 N -0.093 5.093
22 C -0.069 4.069
23 C -0.095 4.095
24 C -0.114 4.114
25 C -0.116 4.116
26 C -0.120 4.120
27 C -0.111 4.111
28 C -0.053 4.053
29 H 0.065 0.935
30 H 0.218 0.782
31 H 0.036 0.964
32 H 0.037 0.963
33 H 0.089 0.911
34 H 0.088 0.912
35 H 0.068 0.932
36 H 0.068 0.932
37 H 0.087 0.913
38 H 0.075 0.925
39 H 0.101 0.899
40 H 0.105 0.895
41 H 0.256 0.744
42 H 0.200 0.800
43 H 0.160 0.840
44 H 0.152 0.848
45 H 0.153 0.847
46 H 0.191 0.809
Dipole moment (debyes) X Y Z Total
from point charges -6.946 -32.922 -7.831 34.546
hybrid contribution -0.425 0.009 -0.119 0.441
sum -7.371 -32.913 -7.949 34.652
Atomic orbital electron populations
1.69679 1.05133 1.25547 1.57777 1.24767 0.95553 0.97758 1.03049
0.86094 0.78739 0.84043 0.77180 1.20545 1.21839 1.21863 1.19288
0.91084 0.84134 1.42624 0.91076 1.42348 1.05985 0.99919 1.89491
1.20512 0.93301 0.85474 0.97819 1.21675 0.99438 0.91785 1.03414
1.22510 0.91784 0.86419 1.00089 1.87940 1.33902 1.13241 1.95462
1.22710 0.94835 0.83885 1.01586 1.21543 0.93882 0.98143 0.86685
1.45817 1.32630 1.35049 1.21177 1.17414 0.80083 0.81571 0.84527
1.90625 1.67687 1.37028 1.45406 1.22912 0.96064 0.93763 0.96485
1.72776 1.18517 1.17066 0.97639 1.72711 1.05700 1.22839 1.08067
1.24902 0.93201 0.89273 0.99507 1.18932 0.98134 0.97699 0.94687
1.20978 0.96230 0.93819 1.00419 1.21191 0.98915 0.97625 0.93840
1.21301 0.95118 0.99065 0.96477 1.22009 0.96661 0.91731 1.00743
1.18596 0.95621 0.96209 0.94904 0.93539 0.78169 0.96354 0.96291
0.91069 0.91188 0.93235 0.93181 0.91305 0.92482 0.89857 0.89489
0.74443 0.80013 0.84044 0.84823 0.84732 0.80899
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -29.06 13.06 55.49 0.72 -28.34 16
2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16
3 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16
4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16
6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16
7 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16
8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16
9 N -0.73 -19.45 5.60 -59.91 -0.34 -19.79 16
10 C 0.16 3.25 6.26 -4.04 -0.03 3.23 16
11 C -0.13 -2.16 5.70 -26.73 -0.15 -2.31 16
12 C 0.07 0.92 5.94 37.16 0.22 1.15 16
13 O -0.39 -5.03 10.29 -35.23 -0.36 -5.40 16
14 C 0.05 0.43 6.07 37.16 0.23 0.65 16
15 C 0.12 1.09 6.06 -4.04 -0.02 1.07 16
16 N -0.70 -7.38 5.49 -61.23 -0.34 -7.72 16
17 C 0.58 6.84 7.79 -12.30 -0.10 6.74 16
18 O -0.53 -6.75 13.59 5.33 0.07 -6.68 16
19 C 0.07 0.77 6.90 -82.42 -0.57 0.20 16
20 N -0.22 -2.85 10.70 33.56 0.36 -2.49 16
21 N -0.26 -3.11 11.42 30.90 0.35 -2.75 16
22 C 0.10 0.86 11.20 -16.75 -0.19 0.67 16
23 C -0.09 -0.72 5.75 -106.85 -0.61 -1.33 16
24 C -0.09 -0.49 9.84 -39.54 -0.39 -0.88 16
25 C -0.10 -0.45 9.95 -39.87 -0.40 -0.85 16
26 C -0.10 -0.60 9.95 -39.83 -0.40 -1.00 16
27 C -0.09 -0.81 9.27 -39.66 -0.37 -1.18 16
28 C -0.05 -0.47 5.77 -106.57 -0.61 -1.08 16
29 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16
30 H 0.38 10.74 7.67 -40.82 -0.31 10.43 16
31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16
33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16
34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16
35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
39 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16
40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16
41 H 0.42 4.49 7.87 -40.82 -0.32 4.17 16
42 H 0.18 0.73 8.06 -52.49 -0.42 0.31 16
43 H 0.14 0.30 8.06 -52.49 -0.42 -0.13 16
44 H 0.13 0.25 8.06 -52.49 -0.42 -0.17 16
45 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16
46 H 0.17 1.67 5.12 -52.49 -0.27 1.41 16
LS Contribution 393.38 15.07 5.93 5.93
Total: -1.00 -35.92 393.38 -8.62 -44.54
By element:
Atomic # 1 Polarization: 13.79 SS G_CDS: -6.37 Total: 7.42 kcal
Atomic # 6 Polarization: 1.06 SS G_CDS: -3.63 Total: -2.58 kcal
Atomic # 7 Polarization: -61.85 SS G_CDS: 0.76 Total: -61.08 kcal
Atomic # 8 Polarization: -11.78 SS G_CDS: -0.29 Total: -12.07 kcal
Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal
Total LS contribution 5.93 Total: 5.93 kcal
Total: -35.92 -8.62 -44.54 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725451804.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.203 kcal
(2) G-P(sol) polarization free energy of solvation -35.923 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.280 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.545 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.658 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds