Wall clock time and date at job start Sat Apr 11 2020 07:09:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31613 * 1
3 3 Si 1.86803 * 120.00052 * 2 1
4 4 H 1.48500 * 109.46888 * 179.97438 * 3 2 1
5 5 H 1.48504 * 109.46828 * 299.99701 * 3 2 1
6 6 H 1.48499 * 109.47241 * 59.99689 * 3 2 1
7 7 C 1.38809 * 119.99726 * 179.97438 * 2 1 3
8 8 H 1.08008 * 119.99903 * 180.02562 * 7 2 1
9 9 N 1.36938 * 120.00420 * 0.02562 * 7 2 1
10 10 C 1.46499 * 120.00032 * 179.97438 * 9 7 2
11 11 C 1.53001 * 109.46979 * 179.97438 * 10 9 7
12 12 C 1.53000 * 109.47237 * 179.97438 * 11 10 9
13 13 O 1.42902 * 109.47096 * 179.97438 * 12 11 10
14 14 C 1.42897 * 113.99833 * 180.02562 * 13 12 11
15 15 C 1.53004 * 109.47131 * 180.02562 * 14 13 12
16 16 N 1.46501 * 109.46972 * 64.99898 * 15 14 13
17 17 C 1.34781 * 120.00102 * 180.02562 * 16 15 14
18 18 O 1.21546 * 119.99668 * 359.97438 * 17 16 15
19 19 C 1.47903 * 120.00052 * 180.02562 * 17 16 15
20 20 N 1.32377 * 120.63728 * 354.48560 * 19 17 16
21 21 N 1.28094 * 123.18174 * 180.02562 * 20 19 17
22 22 C 1.31801 * 123.49463 * 359.42813 * 21 20 19
23 23 C 1.40401 * 119.13639 * 0.84255 * 22 21 20
24 24 C 1.40234 * 122.73819 * 179.13939 * 23 22 21
25 25 C 1.36258 * 119.36968 * 180.02562 * 24 23 22
26 26 C 1.39382 * 121.07417 * 0.02562 * 25 24 23
27 27 C 1.36369 * 121.08673 * 0.02562 * 26 25 24
28 28 C 1.39828 * 119.41728 * 0.25570 * 27 26 25
29 29 H 0.97004 * 120.00209 * 0.02562 * 1 2 3
30 30 H 0.97000 * 119.99695 * 359.97438 * 9 7 2
31 31 H 1.09003 * 109.47194 * 59.99991 * 10 9 7
32 32 H 1.08996 * 109.46962 * 299.99802 * 10 9 7
33 33 H 1.09003 * 109.47117 * 60.00003 * 11 10 9
34 34 H 1.09004 * 109.47021 * 300.00044 * 11 10 9
35 35 H 1.09003 * 109.46588 * 60.00260 * 12 11 10
36 36 H 1.08992 * 109.47114 * 300.00379 * 12 11 10
37 37 H 1.08996 * 109.47594 * 59.99997 * 14 13 12
38 38 H 1.09000 * 109.47069 * 300.00133 * 14 13 12
39 39 H 1.08992 * 109.47072 * 305.00116 * 15 14 13
40 40 H 1.09001 * 109.47177 * 184.99484 * 15 14 13
41 41 H 0.96999 * 120.00317 * 359.97438 * 16 15 14
42 42 H 1.08001 * 120.42545 * 180.02562 * 22 21 20
43 43 H 1.08001 * 120.31547 * 0.04233 * 24 23 22
44 44 H 1.07995 * 119.46572 * 180.02562 * 25 24 23
45 45 H 1.07999 * 119.45502 * 179.97438 * 26 25 24
46 46 H 1.08001 * 120.28629 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.7101 1.3463 0.0006
5 1 1.8914 2.3964 -1.2126
6 1 1.8914 2.3965 1.2124
7 6 2.0101 -1.2021 0.0005
8 1 3.0902 -1.2022 0.0010
9 7 1.3255 -2.3881 0.0005
10 6 2.0580 -3.6568 0.0005
11 6 1.0637 -4.8197 0.0012
12 6 1.8287 -6.1447 0.0005
13 8 0.9000 -7.2309 0.0017
14 6 1.5146 -8.5210 0.0018
15 6 0.4316 -9.6018 0.0025
16 7 -0.3269 -9.5338 -1.2490
17 6 -1.3388 -10.3959 -1.4715
18 8 -1.6217 -11.2300 -0.6339
19 6 -2.1041 -10.3277 -2.7352
20 7 -1.8791 -9.3588 -3.6087
21 7 -2.5129 -9.2526 -4.7167
22 6 -3.4441 -10.1002 -5.1061
23 6 -3.7854 -11.1735 -4.2676
24 6 -4.7763 -12.1090 -4.5985
25 6 -5.0525 -13.1243 -3.7327
26 6 -4.3669 -13.2468 -2.5254
27 6 -3.3984 -12.3542 -2.1719
28 6 -3.0923 -11.2960 -3.0331
29 1 -0.4851 0.8401 -0.0004
30 1 0.3555 -2.3881 0.0005
31 1 2.6847 -3.7145 0.8905
32 1 2.6846 -3.7145 -0.8894
33 1 0.4367 -4.7622 -0.8886
34 1 0.4374 -4.7617 0.8914
35 1 2.4559 -6.2025 0.8901
36 1 2.4547 -6.2024 -0.8898
37 1 2.1354 -8.6277 0.8913
38 1 2.1340 -8.6284 -0.8886
39 1 -0.2416 -9.4410 0.8445
40 1 0.8976 -10.5831 0.0921
41 1 -0.1013 -8.8680 -1.9173
42 1 -3.9474 -9.9633 -6.0518
43 1 -5.3152 -12.0256 -5.5307
44 1 -5.8150 -13.8458 -3.9861
45 1 -4.6073 -14.0615 -1.8585
46 1 -2.8755 -12.4613 -1.2330
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001725451804.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:09:20
Heat of formation + Delta-G solvation = -19.721455 kcal
Electronic energy + Delta-G solvation = -27848.450169 eV
Core-core repulsion = 23737.945248 eV
Total energy + Delta-G solvation = -4110.504920 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.164 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-42.62380 -40.65714 -39.19059 -39.06917 -37.07268 -35.98094 -34.57797 -34.12430
-32.86731 -31.98119 -31.43224 -30.13182 -27.04075 -26.63490 -25.38473 -24.42592
-24.18075 -23.27158 -22.32895 -22.21316 -19.82309 -19.24170 -19.14165 -18.52421
-17.86035 -17.59028 -17.10272 -16.85508 -16.76494 -16.57493 -15.97899 -15.72948
-15.63954 -15.43383 -15.29880 -15.14803 -14.96474 -14.63033 -14.41020 -13.93675
-13.65055 -13.36123 -13.28922 -13.16605 -12.83106 -12.66949 -12.62281 -12.56568
-12.39227 -12.06868 -12.01549 -11.94648 -11.76141 -11.74750 -10.98165 -10.96298
-10.83364 -10.55094 -10.44436 -10.28966 -9.56534 -9.03841 -7.96984 -5.27449
-1.17146 -0.50008 0.50531 1.41034 1.46854 1.48782 1.59053 1.81426
2.01437 2.49317 2.63841 2.73786 2.84840 3.24990 3.36774 3.36839
3.55283 3.67433 3.80353 3.90622 4.03039 4.07646 4.17252 4.18690
4.22189 4.34900 4.40900 4.41441 4.50311 4.57118 4.61080 4.72413
4.73488 4.75640 4.79571 4.84369 4.94565 5.13975 5.23600 5.29005
5.31315 5.32645 5.43847 5.47899 5.74108 6.20876 6.23131 6.26971
6.86383 7.30459 7.53424 8.05841 8.28829 9.27242
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.015232 B = 0.001673 C = 0.001551
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1837.805374 B =16734.503901 C =18046.081039
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.972 5.972
2 C -0.080 4.080
3 Si 0.980 3.020
4 H -0.263 1.263
5 H -0.292 1.292
6 H -0.292 1.292
7 C -0.249 4.249
8 H 0.080 0.920
9 N -0.751 5.751
10 C 0.155 3.845
11 C -0.115 4.115
12 C 0.078 3.922
13 O -0.409 6.409
14 C 0.047 3.953
15 C 0.120 3.880
16 N -0.695 5.695
17 C 0.577 3.423
18 O -0.548 6.548
19 C 0.044 3.956
20 N -0.250 5.250
21 N -0.307 5.307
22 C 0.118 3.882
23 C -0.103 4.103
24 C -0.082 4.082
25 C -0.093 4.093
26 C -0.086 4.086
27 C -0.122 4.122
28 C -0.068 4.068
29 H 0.252 0.748
30 H 0.372 0.628
31 H 0.028 0.972
32 H 0.027 0.973
33 H 0.056 0.944
34 H 0.057 0.943
35 H 0.067 0.933
36 H 0.065 0.935
37 H 0.092 0.908
38 H 0.073 0.927
39 H 0.070 0.930
40 H 0.107 0.893
41 H 0.417 0.583
42 H 0.225 0.775
43 H 0.182 0.818
44 H 0.173 0.827
45 H 0.160 0.840
46 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.853 -36.028 -9.216 38.008
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.623 5.623
2 C -0.272 4.272
3 Si 0.808 3.192
4 H -0.187 1.187
5 H -0.219 1.219
6 H -0.219 1.219
7 C -0.380 4.380
8 H 0.098 0.902
9 N -0.393 5.393
10 C 0.029 3.971
11 C -0.153 4.153
12 C 0.002 3.998
13 O -0.329 6.329
14 C -0.030 4.030
15 C -0.002 4.002
16 N -0.346 5.346
17 C 0.360 3.640
18 O -0.426 6.426
19 C -0.115 4.115
20 N -0.086 5.086
21 N -0.138 5.138
22 C -0.055 4.055
23 C -0.111 4.111
24 C -0.101 4.101
25 C -0.112 4.112
26 C -0.105 4.105
27 C -0.142 4.142
28 C -0.076 4.076
29 H 0.061 0.939
30 H 0.204 0.796
31 H 0.046 0.954
32 H 0.045 0.955
33 H 0.074 0.926
34 H 0.076 0.924
35 H 0.085 0.915
36 H 0.083 0.917
37 H 0.110 0.890
38 H 0.091 0.909
39 H 0.089 0.911
40 H 0.125 0.875
41 H 0.253 0.747
42 H 0.241 0.759
43 H 0.199 0.801
44 H 0.191 0.809
45 H 0.177 0.823
46 H 0.173 0.827
Dipole moment (debyes) X Y Z Total
from point charges -7.067 -35.007 -8.960 36.820
hybrid contribution -0.481 0.439 0.195 0.680
sum -7.547 -34.568 -8.765 36.451
Atomic orbital electron populations
1.69849 1.06846 1.26154 1.59467 1.25689 0.96488 1.01504 1.03529
0.84979 0.78260 0.79231 0.76697 1.18685 1.21942 1.21904 1.19744
0.91713 0.85242 1.41345 0.90174 1.42625 1.05715 1.01450 1.89554
1.20675 0.93792 0.84379 0.98269 1.21490 0.98666 0.93083 1.02075
1.22312 0.91152 0.84723 1.01640 1.87896 1.34764 1.14560 1.95731
1.22912 0.94865 0.81755 1.03424 1.21654 0.93687 0.99278 0.85589
1.45910 1.32503 1.34622 1.21535 1.17586 0.80232 0.81489 0.84665
1.90607 1.68282 1.37723 1.45986 1.22959 0.97275 0.94734 0.96492
1.72642 1.19656 1.17900 0.98365 1.72596 1.07890 1.24976 1.08380
1.25552 0.91478 0.87968 1.00463 1.19240 0.99085 0.98714 0.94015
1.21481 0.94589 0.92314 1.01739 1.21666 0.98934 0.97943 0.92679
1.21692 0.93270 0.98283 0.97296 1.21916 0.98630 0.93031 1.00589
1.18836 0.95937 0.96429 0.96349 0.93937 0.79625 0.95366 0.95481
0.92564 0.92430 0.91501 0.91725 0.88982 0.90929 0.91129 0.87521
0.74665 0.75891 0.80105 0.80922 0.82271 0.82674
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -61.85 13.06 21.65 0.28 -61.57 16
2 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16
3 Si 0.98 47.21 29.55 68.60 2.03 49.24 16
4 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16
5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16
6 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16
7 C -0.25 -14.44 9.99 84.03 0.84 -13.60 16
8 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16
9 N -0.75 -40.42 5.60 -343.45 -1.92 -42.34 16
10 C 0.16 6.40 6.26 86.38 0.54 6.94 16
11 C -0.12 -4.01 5.70 30.59 0.17 -3.83 16
12 C 0.08 2.02 5.94 71.98 0.43 2.44 16
13 O -0.41 -10.49 10.29 -148.98 -1.53 -12.02 16
14 C 0.05 0.79 6.07 71.98 0.44 1.23 16
15 C 0.12 2.20 6.06 86.38 0.52 2.72 16
16 N -0.70 -15.69 5.49 -465.91 -2.56 -18.25 16
17 C 0.58 14.75 7.79 86.80 0.68 15.42 16
18 O -0.55 -15.03 13.59 -3.86 -0.05 -15.09 16
19 C 0.04 1.11 6.90 42.43 0.29 1.41 16
20 N -0.25 -6.87 10.70 -47.74 -0.51 -7.38 16
21 N -0.31 -7.58 11.42 -56.16 -0.64 -8.22 16
22 C 0.12 1.84 11.20 85.22 0.95 2.80 16
23 C -0.10 -1.58 5.75 -21.31 -0.12 -1.70 16
24 C -0.08 -0.56 9.84 22.29 0.22 -0.34 16
25 C -0.09 -0.52 9.95 22.08 0.22 -0.30 16
26 C -0.09 -0.86 9.95 22.11 0.22 -0.64 16
27 C -0.12 -2.20 9.27 22.22 0.21 -1.99 16
28 C -0.07 -1.45 5.77 -21.12 -0.12 -1.57 16
29 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16
30 H 0.37 21.49 7.67 -92.71 -0.71 20.78 16
31 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16
32 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16
33 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16
34 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16
35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16
36 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16
37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16
38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16
39 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16
40 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16
41 H 0.42 9.62 7.87 -92.71 -0.73 8.89 16
42 H 0.22 1.18 8.06 -2.91 -0.02 1.16 16
43 H 0.18 -0.22 8.06 -2.91 -0.02 -0.24 16
44 H 0.17 -0.32 8.06 -2.91 -0.02 -0.35 16
45 H 0.16 0.72 8.06 -2.91 -0.02 0.69 16
46 H 0.16 3.29 5.12 -2.91 -0.01 3.27 16
Total: -1.00 -81.59 393.38 0.63 -80.97
By element:
Atomic # 1 Polarization: 30.38 SS G_CDS: -0.42 Total: 29.97 kcal
Atomic # 6 Polarization: -1.26 SS G_CDS: 5.95 Total: 4.69 kcal
Atomic # 7 Polarization: -132.41 SS G_CDS: -5.35 Total: -137.76 kcal
Atomic # 8 Polarization: -25.52 SS G_CDS: -1.59 Total: -27.11 kcal
Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal
Total: -81.59 0.63 -80.97 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725451804.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.246 kcal
(2) G-P(sol) polarization free energy of solvation -81.594 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.348 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.627 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.967 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.721 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds