Wall clock time and date at job start Sat Apr 11 2020 07:08:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31613 * 1
3 3 Si 1.86798 * 120.00167 * 2 1
4 4 H 1.48495 * 109.47287 * 270.00047 * 3 2 1
5 5 H 1.48499 * 109.46977 * 30.00284 * 3 2 1
6 6 H 1.48504 * 109.46976 * 150.00092 * 3 2 1
7 7 C 1.38815 * 119.99841 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00150 * 180.02562 * 7 2 1
9 9 N 1.36940 * 120.00194 * 359.97438 * 7 2 1
10 10 C 1.46501 * 120.00069 * 179.97438 * 9 7 2
11 11 H 1.08994 * 112.88648 * 336.34783 * 10 9 7
12 12 C 1.54247 * 113.66423 * 107.81915 * 10 9 7
13 13 C 1.53948 * 87.19039 * 139.20154 * 12 10 9
14 14 H 1.09003 * 113.66607 * 220.75178 * 13 12 10
15 15 N 1.46504 * 113.66209 * 89.78507 * 13 12 10
16 16 C 1.34778 * 119.99691 * 106.01440 * 15 13 12
17 17 O 1.21536 * 120.00190 * 0.02562 * 16 15 13
18 18 C 1.48006 * 119.99806 * 180.02562 * 16 15 13
19 19 C 1.39871 * 120.46094 * 180.02562 * 18 16 15
20 20 C 1.38445 * 118.35687 * 179.97438 * 19 18 16
21 21 C 1.39305 * 119.19032 * 0.02562 * 20 19 18
22 22 C 1.48340 * 119.56881 * 180.02562 * 21 20 19
23 23 N 1.34774 * 119.99762 * 180.02562 * 22 21 20
24 24 O 1.21494 * 120.00220 * 0.02562 * 22 21 20
25 25 N 1.32709 * 120.85845 * 0.02562 * 21 20 19
26 26 C 1.31415 * 121.80081 * 359.97438 * 25 21 20
27 27 C 1.52905 * 113.65931 * 205.00014 * 10 9 7
28 28 C 1.52903 * 121.14258 * 346.35459 * 27 10 9
29 29 C 1.53954 * 86.78520 * 100.81814 * 28 27 10
30 30 C 1.52910 * 121.13485 * 94.91448 * 27 10 9
31 31 H 0.97003 * 120.00030 * 359.97438 * 1 2 3
32 32 H 0.97003 * 119.99477 * 0.02562 * 9 7 2
33 33 H 1.09002 * 113.57778 * 24.65111 * 12 10 9
34 34 H 1.08996 * 113.66973 * 253.76925 * 12 10 9
35 35 H 0.96999 * 120.00392 * 286.02003 * 15 13 12
36 36 H 1.08004 * 120.82123 * 359.96970 * 19 18 16
37 37 H 1.08002 * 120.40339 * 180.29700 * 20 19 18
38 38 H 0.97008 * 120.00190 * 359.97438 * 23 22 21
39 39 H 0.97000 * 120.00455 * 180.02562 * 23 22 21
40 40 H 1.08005 * 119.64290 * 180.02562 * 26 25 21
41 41 H 1.08998 * 113.66821 * 215.29106 * 28 27 10
42 42 H 1.09002 * 113.65985 * 346.34516 * 28 27 10
43 43 H 1.09001 * 113.57405 * 270.13146 * 29 28 27
44 44 H 1.08993 * 113.64911 * 139.35143 * 29 28 27
45 45 H 1.09005 * 113.66140 * 13.64882 * 30 27 10
46 46 H 1.09003 * 113.66572 * 144.61059 * 30 27 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0464 -1.4000
5 1 1.4476 2.6526 0.7001
6 1 3.5477 1.4400 0.7000
7 6 2.0102 -1.2022 -0.0005
8 1 3.0902 -1.2023 -0.0001
9 7 1.3255 -2.3881 -0.0005
10 6 2.0580 -3.6569 -0.0017
11 1 3.0662 -3.5639 -0.4053
12 6 1.9942 -4.4098 1.3430
13 6 1.8252 -5.7027 0.5245
14 1 1.0948 -6.3942 0.9446
15 7 3.0932 -6.3519 0.1824
16 6 3.4674 -7.4783 0.8210
17 8 2.7527 -7.9556 1.6803
18 6 4.7486 -8.1338 0.4757
19 6 5.1462 -9.3034 1.1319
20 6 6.3527 -9.8804 0.7742
21 6 7.1243 -9.2813 -0.2189
22 6 8.4183 -9.8928 -0.6092
23 7 9.1720 -9.3202 -1.5686
24 8 8.7986 -10.9098 -0.0641
25 7 6.7169 -8.1707 -0.8204
26 6 5.5785 -7.5925 -0.5095
27 6 1.2651 -4.8227 -0.5935
28 6 -0.2409 -4.7133 -0.8342
29 6 0.1016 -4.4605 -2.3138
30 6 1.4181 -5.2179 -2.0626
31 1 -0.4850 0.8401 0.0004
32 1 0.3554 -2.3881 -0.0005
33 1 1.1204 -4.1566 1.9434
34 1 2.9239 -4.3714 1.9106
35 1 3.6635 -5.9711 -0.5036
36 1 4.5272 -9.7453 1.8988
37 1 6.6895 -10.7864 1.2561
38 1 8.8681 -8.5084 -2.0042
39 1 10.0179 -9.7201 -1.8242
40 1 5.2806 -6.6895 -1.0217
41 1 -0.7802 -5.6449 -0.6631
42 1 -0.7020 -3.8583 -0.3397
43 1 0.2437 -3.4070 -2.5545
44 1 -0.5668 -4.9669 -3.0100
45 1 2.2824 -4.7661 -2.5495
46 1 1.3468 -6.2916 -2.2366
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001078827996.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:08:36
Heat of formation + Delta-G solvation = 22.689181 kcal
Electronic energy + Delta-G solvation = -29373.569887 eV
Core-core repulsion = 25264.904030 eV
Total energy + Delta-G solvation = -4108.665857 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.164 amu
Computer time = 1.24 seconds
Orbital eigenvalues (eV)
-41.31118 -40.58631 -39.47643 -38.52703 -35.16640 -34.31601 -34.20112 -32.86939
-32.76810 -31.56463 -29.84729 -26.24231 -25.50697 -24.59813 -24.19139 -24.09667
-22.52082 -21.79353 -20.95414 -20.15740 -18.88291 -18.30750 -17.93584 -17.53558
-16.88910 -16.58906 -15.84740 -15.62166 -15.49053 -15.31785 -15.09842 -14.91012
-14.77547 -14.36941 -13.91812 -13.73316 -13.64418 -13.49220 -13.07218 -12.68539
-12.54482 -12.07398 -11.86321 -11.77277 -11.41693 -10.94083 -10.93039 -10.88755
-10.68551 -10.49869 -10.45144 -10.21906 -10.17076 -10.16807 -9.95401 -9.92648
-9.74156 -9.69726 -9.46133 -8.90753 -8.83885 -7.03329 -5.85311 -3.14092
-0.18718 0.68352 2.01406 2.79341 2.83224 2.91244 3.37846 3.43782
3.45231 3.45591 3.63004 4.25315 4.28359 4.44636 4.49500 4.52383
4.67482 4.71634 4.94159 5.01511 5.12776 5.15563 5.22614 5.37155
5.45180 5.52511 5.63658 5.75362 5.88615 5.92106 5.94238 5.98810
6.04610 6.07310 6.24824 6.26696 6.33968 6.37666 6.51325 6.56186
6.77440 6.81631 6.85820 6.96380 7.15658 7.37856 7.62509 7.73858
8.01260 8.33256 9.45076 10.01678 10.36245 11.36751
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.013697 B = 0.002392 C = 0.002212
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2043.708812 B =11702.924237 C =12653.888647
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.930 5.930
2 C -0.010 4.010
3 Si 0.906 3.094
4 H -0.290 1.290
5 H -0.291 1.291
6 H -0.282 1.282
7 C -0.246 4.246
8 H 0.070 0.930
9 N -0.707 5.707
10 C 0.192 3.808
11 H 0.076 0.924
12 C -0.175 4.175
13 C 0.128 3.872
14 H 0.098 0.902
15 N -0.693 5.693
16 C 0.560 3.440
17 O -0.530 6.530
18 C -0.156 4.156
19 C -0.022 4.022
20 C -0.116 4.116
21 C 0.090 3.910
22 C 0.578 3.422
23 N -0.833 5.833
24 O -0.534 6.534
25 N -0.460 5.460
26 C 0.133 3.867
27 C -0.121 4.121
28 C -0.109 4.109
29 C -0.131 4.131
30 C -0.127 4.127
31 H 0.256 0.744
32 H 0.388 0.612
33 H 0.087 0.913
34 H 0.059 0.941
35 H 0.400 0.600
36 H 0.158 0.842
37 H 0.156 0.844
38 H 0.414 0.586
39 H 0.406 0.594
40 H 0.169 0.831
41 H 0.074 0.926
42 H 0.079 0.921
43 H 0.090 0.910
44 H 0.057 0.943
45 H 0.065 0.935
46 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.321 -18.449 -4.438 22.096
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.578 5.578
2 C -0.206 4.206
3 Si 0.737 3.263
4 H -0.217 1.217
5 H -0.218 1.218
6 H -0.208 1.208
7 C -0.377 4.377
8 H 0.088 0.912
9 N -0.345 5.345
10 C 0.079 3.921
11 H 0.094 0.906
12 C -0.217 4.217
13 C 0.023 3.977
14 H 0.116 0.884
15 N -0.342 5.342
16 C 0.345 3.655
17 O -0.408 6.408
18 C -0.161 4.161
19 C -0.049 4.049
20 C -0.137 4.137
21 C -0.048 4.048
22 C 0.361 3.639
23 N -0.396 5.396
24 O -0.409 6.409
25 N -0.171 5.171
26 C -0.028 4.028
27 C -0.124 4.124
28 C -0.147 4.147
29 C -0.168 4.168
30 C -0.165 4.165
31 H 0.066 0.934
32 H 0.223 0.777
33 H 0.106 0.894
34 H 0.078 0.922
35 H 0.235 0.765
36 H 0.175 0.825
37 H 0.174 0.826
38 H 0.244 0.756
39 H 0.238 0.762
40 H 0.186 0.814
41 H 0.093 0.907
42 H 0.098 0.902
43 H 0.109 0.891
44 H 0.076 0.924
45 H 0.083 0.917
46 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 11.548 -18.878 -4.026 22.493
hybrid contribution 0.086 1.113 0.027 1.117
sum 11.634 -17.765 -3.998 21.608
Atomic orbital electron populations
1.69647 1.05105 1.25821 1.57194 1.24746 0.95499 0.97736 1.02661
0.86212 0.78717 0.83866 0.77502 1.21705 1.21772 1.20751 1.19266
0.91015 0.84156 1.43231 0.91172 1.42396 1.05925 0.99540 1.86677
1.21339 0.94304 0.84613 0.91846 0.90608 1.24343 1.02094 0.95167
1.00083 1.21800 0.84571 0.93657 0.97659 0.88426 1.45527 1.22827
1.25638 1.40230 1.17961 0.84948 0.80683 0.81864 1.90794 1.53845
1.64357 1.31770 1.21312 0.97127 0.98033 0.99628 1.21825 0.94460
0.92162 0.96429 1.22148 0.93794 1.01210 0.96506 1.21258 0.95603
0.92866 0.95110 1.17873 0.83188 0.83271 0.79577 1.43643 1.24431
1.31359 1.40211 1.90846 1.71882 1.24022 1.54173 1.67511 1.15581
1.08305 1.25727 1.22988 0.88526 0.98189 0.93048 1.23601 0.97869
0.97926 0.92965 1.22453 0.93699 1.01713 0.96877 1.22733 0.96521
1.01484 0.96075 1.22659 0.98723 0.99283 0.95807 0.93402 0.77661
0.89413 0.92185 0.76481 0.82467 0.82587 0.75588 0.76240 0.81407
0.90728 0.90208 0.89127 0.92446 0.91665 0.90920
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -26.82 13.06 55.49 0.72 -26.09 16
2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16
3 Si 0.91 21.54 29.55 -169.99 -5.02 16.52 16
4 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16
5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
7 C -0.25 -6.39 9.97 -15.06 -0.15 -6.54 16
8 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16
9 N -0.71 -16.19 5.32 -52.84 -0.28 -16.47 16
10 C 0.19 3.39 4.29 -67.33 -0.29 3.10 16
11 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16
12 C -0.17 -2.88 7.70 -25.59 -0.20 -3.08 16
13 C 0.13 1.78 4.09 -67.48 -0.28 1.51 16
14 H 0.10 1.46 7.50 -51.93 -0.39 1.07 16
15 N -0.69 -7.90 5.01 -54.26 -0.27 -8.18 16
16 C 0.56 6.86 7.79 -12.26 -0.10 6.76 16
17 O -0.53 -8.33 16.03 5.33 0.09 -8.25 16
18 C -0.16 -1.52 5.90 -104.73 -0.62 -2.14 16
19 C -0.02 -0.20 9.71 -38.89 -0.38 -0.58 16
20 C -0.12 -1.01 9.62 -39.11 -0.38 -1.38 16
21 C 0.09 0.83 6.75 -82.93 -0.56 0.27 16
22 C 0.58 5.40 8.09 -12.10 -0.10 5.30 16
23 N -0.83 -4.90 8.86 30.64 0.27 -4.62 16
24 O -0.53 -6.56 17.15 5.37 0.09 -6.46 16
25 N -0.46 -4.00 9.52 -9.48 -0.09 -4.09 16
26 C 0.13 1.11 10.71 -17.17 -0.18 0.93 16
27 C -0.12 -1.75 0.91 -154.71 -0.14 -1.89 16
28 C -0.11 -1.63 7.47 -26.28 -0.20 -1.83 16
29 C -0.13 -1.88 8.08 -25.75 -0.21 -2.08 16
30 C -0.13 -1.62 7.46 -26.29 -0.20 -1.81 16
31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16
32 H 0.39 9.46 5.92 -40.82 -0.24 9.22 16
33 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16
34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16
35 H 0.40 3.65 6.64 -40.82 -0.27 3.38 16
36 H 0.16 1.32 7.73 -52.48 -0.41 0.91 16
37 H 0.16 1.19 7.63 -52.49 -0.40 0.79 16
38 H 0.41 1.90 8.15 -40.82 -0.33 1.57 16
39 H 0.41 1.67 8.93 -40.82 -0.36 1.30 16
40 H 0.17 1.00 6.41 -52.48 -0.34 0.66 16
41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
42 H 0.08 1.38 6.42 -51.93 -0.33 1.05 16
43 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16
44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16
45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
46 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16
LS Contribution 386.43 15.07 5.82 5.82
Total: -1.00 -32.64 386.43 -8.73 -41.37
By element:
Atomic # 1 Polarization: 20.30 SS G_CDS: -6.00 Total: 14.29 kcal
Atomic # 6 Polarization: 0.22 SS G_CDS: -4.06 Total: -3.84 kcal
Atomic # 7 Polarization: -59.81 SS G_CDS: 0.35 Total: -59.46 kcal
Atomic # 8 Polarization: -14.89 SS G_CDS: 0.18 Total: -14.71 kcal
Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal
Total LS contribution 5.82 Total: 5.82 kcal
Total: -32.64 -8.73 -41.37 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001078827996.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.059 kcal
(2) G-P(sol) polarization free energy of solvation -32.640 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.419 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.689 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.24 seconds