Wall clock time and date at job start Sat Apr 11 2020 07:08:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31613 * 1
3 3 Si 1.86798 * 120.00167 * 2 1
4 4 H 1.48495 * 109.47287 * 270.00047 * 3 2 1
5 5 H 1.48499 * 109.46977 * 30.00284 * 3 2 1
6 6 H 1.48504 * 109.46976 * 150.00092 * 3 2 1
7 7 C 1.38815 * 119.99841 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00150 * 180.02562 * 7 2 1
9 9 N 1.36940 * 120.00194 * 359.97438 * 7 2 1
10 10 C 1.46501 * 120.00069 * 179.97438 * 9 7 2
11 11 H 1.08994 * 112.88648 * 336.34783 * 10 9 7
12 12 C 1.54247 * 113.66423 * 107.81915 * 10 9 7
13 13 C 1.53948 * 87.19039 * 139.20154 * 12 10 9
14 14 H 1.09003 * 113.66607 * 220.75178 * 13 12 10
15 15 N 1.46504 * 113.66209 * 89.78507 * 13 12 10
16 16 C 1.34778 * 119.99691 * 106.01440 * 15 13 12
17 17 O 1.21536 * 120.00190 * 0.02562 * 16 15 13
18 18 C 1.48006 * 119.99806 * 180.02562 * 16 15 13
19 19 C 1.39871 * 120.46094 * 180.02562 * 18 16 15
20 20 C 1.38445 * 118.35687 * 179.97438 * 19 18 16
21 21 C 1.39305 * 119.19032 * 0.02562 * 20 19 18
22 22 C 1.48340 * 119.56881 * 180.02562 * 21 20 19
23 23 N 1.34774 * 119.99762 * 180.02562 * 22 21 20
24 24 O 1.21494 * 120.00220 * 0.02562 * 22 21 20
25 25 N 1.32709 * 120.85845 * 0.02562 * 21 20 19
26 26 C 1.31415 * 121.80081 * 359.97438 * 25 21 20
27 27 C 1.52905 * 113.65931 * 205.00014 * 10 9 7
28 28 C 1.52903 * 121.14258 * 346.35459 * 27 10 9
29 29 C 1.53954 * 86.78520 * 100.81814 * 28 27 10
30 30 C 1.52910 * 121.13485 * 94.91448 * 27 10 9
31 31 H 0.97003 * 120.00030 * 359.97438 * 1 2 3
32 32 H 0.97003 * 119.99477 * 0.02562 * 9 7 2
33 33 H 1.09002 * 113.57778 * 24.65111 * 12 10 9
34 34 H 1.08996 * 113.66973 * 253.76925 * 12 10 9
35 35 H 0.96999 * 120.00392 * 286.02003 * 15 13 12
36 36 H 1.08004 * 120.82123 * 359.96970 * 19 18 16
37 37 H 1.08002 * 120.40339 * 180.29700 * 20 19 18
38 38 H 0.97008 * 120.00190 * 359.97438 * 23 22 21
39 39 H 0.97000 * 120.00455 * 180.02562 * 23 22 21
40 40 H 1.08005 * 119.64290 * 180.02562 * 26 25 21
41 41 H 1.08998 * 113.66821 * 215.29106 * 28 27 10
42 42 H 1.09002 * 113.65985 * 346.34516 * 28 27 10
43 43 H 1.09001 * 113.57405 * 270.13146 * 29 28 27
44 44 H 1.08993 * 113.64911 * 139.35143 * 29 28 27
45 45 H 1.09005 * 113.66140 * 13.64882 * 30 27 10
46 46 H 1.09003 * 113.66572 * 144.61059 * 30 27 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0464 -1.4000
5 1 1.4476 2.6526 0.7001
6 1 3.5477 1.4400 0.7000
7 6 2.0102 -1.2022 -0.0005
8 1 3.0902 -1.2023 -0.0001
9 7 1.3255 -2.3881 -0.0005
10 6 2.0580 -3.6569 -0.0017
11 1 3.0662 -3.5639 -0.4053
12 6 1.9942 -4.4098 1.3430
13 6 1.8252 -5.7027 0.5245
14 1 1.0948 -6.3942 0.9446
15 7 3.0932 -6.3519 0.1824
16 6 3.4674 -7.4783 0.8210
17 8 2.7527 -7.9556 1.6803
18 6 4.7486 -8.1338 0.4757
19 6 5.1462 -9.3034 1.1319
20 6 6.3527 -9.8804 0.7742
21 6 7.1243 -9.2813 -0.2189
22 6 8.4183 -9.8928 -0.6092
23 7 9.1720 -9.3202 -1.5686
24 8 8.7986 -10.9098 -0.0641
25 7 6.7169 -8.1707 -0.8204
26 6 5.5785 -7.5925 -0.5095
27 6 1.2651 -4.8227 -0.5935
28 6 -0.2409 -4.7133 -0.8342
29 6 0.1016 -4.4605 -2.3138
30 6 1.4181 -5.2179 -2.0626
31 1 -0.4850 0.8401 0.0004
32 1 0.3554 -2.3881 -0.0005
33 1 1.1204 -4.1566 1.9434
34 1 2.9239 -4.3714 1.9106
35 1 3.6635 -5.9711 -0.5036
36 1 4.5272 -9.7453 1.8988
37 1 6.6895 -10.7864 1.2561
38 1 8.8681 -8.5084 -2.0042
39 1 10.0179 -9.7201 -1.8242
40 1 5.2806 -6.6895 -1.0217
41 1 -0.7802 -5.6449 -0.6631
42 1 -0.7020 -3.8583 -0.3397
43 1 0.2437 -3.4070 -2.5545
44 1 -0.5668 -4.9669 -3.0100
45 1 2.2824 -4.7661 -2.5495
46 1 1.3468 -6.2916 -2.2366
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001078827996.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:08:35
Heat of formation + Delta-G solvation = -1.777549 kcal
Electronic energy + Delta-G solvation = -29374.630844 eV
Core-core repulsion = 25264.904030 eV
Total energy + Delta-G solvation = -4109.726814 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.164 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-42.18923 -41.62246 -40.37165 -39.41988 -36.36863 -35.82177 -34.98103 -34.07602
-33.53807 -32.62131 -31.47220 -27.21361 -26.65024 -26.18179 -25.45706 -24.79134
-23.87793 -22.77800 -21.85583 -21.29518 -19.72632 -19.50091 -19.08132 -18.58296
-18.04116 -17.43775 -16.90245 -16.63672 -16.41026 -16.30753 -16.26541 -15.96758
-15.91237 -15.50653 -15.31507 -14.90318 -14.51513 -14.33925 -14.09657 -13.86316
-13.83464 -13.42243 -13.29235 -13.13211 -12.85578 -12.73617 -12.48877 -12.12982
-11.89385 -11.84394 -11.68956 -11.47359 -11.30012 -11.15847 -11.06899 -10.86761
-10.79429 -10.71984 -10.66332 -10.44942 -9.95343 -8.92484 -7.91183 -5.18051
-0.92620 0.02031 1.24589 1.49543 1.50139 1.58125 1.89892 1.94893
2.23293 2.58624 2.72387 3.00423 3.40080 3.46795 3.49956 3.63751
3.69831 3.76865 3.81711 3.83035 3.95453 3.99390 4.06069 4.16125
4.29720 4.51656 4.60152 4.66240 4.76105 4.80059 4.85017 4.91056
4.93198 5.03888 5.11214 5.17064 5.20880 5.25404 5.27892 5.52490
5.61614 5.64447 5.69288 5.74856 6.18456 6.30924 6.43094 6.52311
7.07254 7.16192 7.38354 8.16256 8.38339 9.31914
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.013697 B = 0.002392 C = 0.002212
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2043.708812 B =11702.924237 C =12653.888647
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.968 5.968
2 C -0.075 4.075
3 Si 0.966 3.034
4 H -0.288 1.288
5 H -0.302 1.302
6 H -0.270 1.270
7 C -0.237 4.237
8 H 0.078 0.922
9 N -0.720 5.720
10 C 0.178 3.822
11 H 0.086 0.914
12 C -0.174 4.174
13 C 0.150 3.850
14 H 0.092 0.908
15 N -0.682 5.682
16 C 0.565 3.435
17 O -0.568 6.568
18 C -0.164 4.164
19 C -0.021 4.021
20 C -0.117 4.117
21 C 0.085 3.915
22 C 0.575 3.425
23 N -0.813 5.813
24 O -0.569 6.569
25 N -0.458 5.458
26 C 0.141 3.859
27 C -0.111 4.111
28 C -0.113 4.113
29 C -0.132 4.132
30 C -0.109 4.109
31 H 0.249 0.751
32 H 0.377 0.623
33 H 0.067 0.933
34 H 0.059 0.941
35 H 0.414 0.586
36 H 0.161 0.839
37 H 0.163 0.837
38 H 0.422 0.578
39 H 0.416 0.584
40 H 0.195 0.805
41 H 0.097 0.903
42 H 0.046 0.954
43 H 0.056 0.944
44 H 0.078 0.922
45 H 0.074 0.926
46 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.255 -19.723 -5.812 24.463
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.619 5.619
2 C -0.267 4.267
3 Si 0.797 3.203
4 H -0.215 1.215
5 H -0.229 1.229
6 H -0.195 1.195
7 C -0.369 4.369
8 H 0.096 0.904
9 N -0.358 5.358
10 C 0.068 3.932
11 H 0.104 0.896
12 C -0.216 4.216
13 C 0.043 3.957
14 H 0.110 0.890
15 N -0.332 5.332
16 C 0.352 3.648
17 O -0.448 6.448
18 C -0.169 4.169
19 C -0.047 4.047
20 C -0.138 4.138
21 C -0.053 4.053
22 C 0.358 3.642
23 N -0.377 5.377
24 O -0.448 6.448
25 N -0.169 5.169
26 C -0.020 4.020
27 C -0.114 4.114
28 C -0.151 4.151
29 C -0.169 4.169
30 C -0.146 4.146
31 H 0.058 0.942
32 H 0.211 0.789
33 H 0.086 0.914
34 H 0.078 0.922
35 H 0.252 0.748
36 H 0.178 0.822
37 H 0.181 0.819
38 H 0.254 0.746
39 H 0.249 0.751
40 H 0.212 0.788
41 H 0.115 0.885
42 H 0.065 0.935
43 H 0.075 0.925
44 H 0.097 0.903
45 H 0.093 0.907
46 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges 13.565 -20.168 -5.449 24.909
hybrid contribution -0.465 1.440 0.463 1.583
sum 13.101 -18.728 -4.985 23.392
Atomic orbital electron populations
1.69804 1.06526 1.25815 1.59743 1.25478 0.96241 1.00848 1.04123
0.85237 0.77745 0.80063 0.77302 1.21497 1.22869 1.19522 1.19675
0.91519 0.85274 1.40449 0.90394 1.42562 1.05640 1.00626 1.86951
1.21671 0.94902 0.83503 0.93152 0.89583 1.24197 1.01238 0.96795
0.99376 1.21425 0.85507 0.92448 0.96278 0.88956 1.45356 1.22094
1.25347 1.40439 1.18236 0.85243 0.80314 0.80962 1.90786 1.55164
1.65370 1.33438 1.21123 0.96402 0.98517 1.00890 1.21911 0.94522
0.91980 0.96297 1.22224 0.93555 1.01483 0.96496 1.21378 0.95669
0.93069 0.95175 1.17949 0.83422 0.82967 0.79890 1.43539 1.24277
1.31105 1.38761 1.90833 1.72705 1.25613 1.55657 1.67572 1.15641
1.08100 1.25637 1.23353 0.87824 0.98528 0.92248 1.23337 0.97325
0.96034 0.94677 1.22512 0.93986 1.01453 0.97187 1.22649 0.98312
1.00003 0.95970 1.22633 0.97955 1.00609 0.93442 0.94240 0.78946
0.91434 0.92191 0.74810 0.82164 0.81893 0.74558 0.75064 0.78822
0.88493 0.93483 0.92521 0.90347 0.90709 0.88245
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -57.53 13.06 21.65 0.28 -57.24 16
2 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16
3 Si 0.97 44.73 29.55 68.60 2.03 46.76 16
4 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16
5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16
6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16
7 C -0.24 -12.37 9.97 84.03 0.84 -11.53 16
8 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16
9 N -0.72 -33.40 5.32 -321.08 -1.71 -35.11 16
10 C 0.18 6.14 4.29 45.38 0.19 6.33 16
11 H 0.09 2.78 8.10 -2.39 -0.02 2.76 16
12 C -0.17 -5.65 7.70 31.33 0.24 -5.41 16
13 C 0.15 3.90 4.09 45.28 0.19 4.08 16
14 H 0.09 2.62 7.50 -2.39 -0.02 2.60 16
15 N -0.68 -13.68 5.01 -443.86 -2.23 -15.91 16
16 C 0.57 12.62 7.79 86.83 0.68 13.29 16
17 O -0.57 -17.11 16.03 -3.83 -0.06 -17.17 16
18 C -0.16 -2.81 5.90 -19.93 -0.12 -2.93 16
19 C -0.02 -0.34 9.71 22.71 0.22 -0.12 16
20 C -0.12 -1.85 9.62 22.58 0.22 -1.63 16
21 C 0.08 1.39 6.75 41.96 0.28 1.68 16
22 C 0.57 9.77 8.09 86.93 0.70 10.47 16
23 N -0.81 -7.76 8.86 -175.27 -1.55 -9.31 16
24 O -0.57 -13.45 17.15 -3.70 -0.06 -13.51 16
25 N -0.46 -6.64 9.52 -183.90 -1.75 -8.39 16
26 C 0.14 1.89 10.71 85.11 0.91 2.80 16
27 C -0.11 -3.05 0.91 -52.31 -0.05 -3.09 16
28 C -0.11 -3.30 7.47 30.88 0.23 -3.07 16
29 C -0.13 -3.60 8.08 31.23 0.25 -3.35 16
30 C -0.11 -2.42 7.46 30.88 0.23 -2.19 16
31 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16
32 H 0.38 19.07 5.92 -92.71 -0.55 18.53 16
33 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16
34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16
35 H 0.41 6.00 6.64 -92.71 -0.62 5.38 16
36 H 0.16 2.50 7.73 -2.91 -0.02 2.48 16
37 H 0.16 2.31 7.63 -2.91 -0.02 2.29 16
38 H 0.42 2.73 8.15 -92.70 -0.76 1.98 16
39 H 0.42 2.54 8.93 -92.71 -0.83 1.71 16
40 H 0.20 1.45 6.41 -2.91 -0.02 1.44 16
41 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16
42 H 0.05 1.69 6.42 -2.39 -0.02 1.67 16
43 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16
44 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16
45 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16
46 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16
Total: -1.00 -71.95 386.43 -1.24 -73.19
By element:
Atomic # 1 Polarization: 36.70 SS G_CDS: -1.67 Total: 35.03 kcal
Atomic # 6 Polarization: -3.80 SS G_CDS: 5.49 Total: 1.68 kcal
Atomic # 7 Polarization: -119.02 SS G_CDS: -6.96 Total: -125.97 kcal
Atomic # 8 Polarization: -30.56 SS G_CDS: -0.12 Total: -30.68 kcal
Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal
Total: -71.95 -1.24 -73.19 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001078827996.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.410 kcal
(2) G-P(sol) polarization free energy of solvation -71.946 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.536 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.241 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.187 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.778 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds