Wall clock time and date at job start Sat Apr 11 2020 07:08:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31507 * 1
3 3 Si 1.86806 * 119.99833 * 2 1
4 4 H 1.48500 * 109.46997 * 269.99787 * 3 2 1
5 5 H 1.48500 * 109.47193 * 29.99945 * 3 2 1
6 6 H 1.48505 * 109.46803 * 149.99917 * 3 2 1
7 7 C 1.37878 * 120.00392 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99519 * 0.02562 * 7 2 1
9 9 C 1.50696 * 120.00345 * 180.27432 * 7 2 1
10 10 N 1.46495 * 109.47250 * 179.72318 * 9 7 2
11 11 C 1.35058 * 125.92738 * 125.00367 * 10 9 7
12 12 C 1.35066 * 107.98469 * 179.97438 * 11 10 9
13 13 C 1.50707 * 126.07146 * 179.97438 * 12 11 10
14 14 N 1.46898 * 109.46960 * 104.95980 * 13 12 11
15 15 C 1.48554 * 110.99953 * 164.44759 * 14 13 12
16 16 C 1.54378 * 104.59470 * 159.03661 * 15 14 13
17 17 H 1.09010 * 110.32167 * 95.04295 * 16 15 14
18 18 O 1.42900 * 110.32597 * 217.24858 * 16 15 14
19 19 C 1.54259 * 105.06400 * 336.15016 * 16 15 14
20 20 H 1.08993 * 110.32404 * 118.89049 * 19 16 15
21 21 O 1.42896 * 110.32007 * 241.10272 * 19 16 15
22 22 C 1.48557 * 110.99988 * 279.86470 * 14 13 12
23 23 C 1.40867 * 107.85326 * 359.97438 * 12 11 10
24 24 C 1.48364 * 126.03986 * 179.97438 * 23 12 11
25 25 C 1.39770 * 120.90591 * 317.35670 * 24 23 12
26 26 C 1.37965 * 119.02066 * 179.75364 * 25 24 23
27 27 N 1.31935 * 120.87943 * 0.53209 * 26 25 24
28 28 C 1.31927 * 122.00431 * 359.72136 * 27 26 25
29 29 C 1.37960 * 120.88216 * 0.02562 * 28 27 26
30 30 N 1.31650 * 107.91591 * 359.74200 * 23 12 11
31 31 H 0.97001 * 120.00249 * 0.02562 * 1 2 3
32 32 H 1.09002 * 109.47160 * 299.72592 * 9 7 2
33 33 H 1.08998 * 109.46962 * 59.72644 * 9 7 2
34 34 H 1.07997 * 126.00461 * 359.97438 * 11 10 9
35 35 H 1.09000 * 109.47092 * 224.95867 * 13 12 11
36 36 H 1.09001 * 109.47139 * 344.95690 * 13 12 11
37 37 H 1.08999 * 110.41264 * 277.81490 * 15 14 13
38 38 H 1.08998 * 110.41490 * 40.26003 * 15 14 13
39 39 H 0.96699 * 114.00308 * 298.54905 * 18 16 15
40 40 H 0.96705 * 113.99741 * 179.97438 * 21 19 16
41 41 H 1.08998 * 110.41312 * 319.74459 * 22 14 13
42 42 H 1.09002 * 110.41050 * 82.18261 * 22 14 13
43 43 H 1.08002 * 120.48853 * 0.02562 * 25 24 23
44 44 H 1.08001 * 119.55981 * 180.25077 * 26 25 24
45 45 H 1.07999 * 119.56119 * 180.02562 * 28 27 26
46 46 H 1.08004 * 120.48905 * 179.97438 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0464 -1.4001
5 1 1.4465 2.6527 0.7000
6 1 3.5466 1.4402 0.7001
7 6 2.0045 -1.1940 0.0005
8 1 1.4645 -2.1293 0.0005
9 6 3.5115 -1.1940 0.0068
10 7 3.9998 -2.5752 0.0128
11 6 4.8592 -3.1157 -0.8779
12 6 5.0615 -4.4056 -0.5322
13 6 5.9497 -5.3882 -1.2512
14 7 7.1815 -5.5920 -0.4774
15 6 7.9054 -6.8045 -0.9385
16 6 9.3580 -6.5962 -0.4589
17 1 9.5147 -7.0907 0.4998
18 8 10.2782 -7.0947 -1.4319
19 6 9.5147 -5.0693 -0.3061
20 1 9.7482 -4.8142 0.7275
21 8 10.5357 -4.5852 -1.1808
22 6 8.1436 -4.4834 -0.7063
23 6 4.2949 -4.6693 0.6198
24 6 4.2186 -5.9642 1.3400
25 6 4.1165 -7.1699 0.6403
26 6 4.0531 -8.3518 1.3491
27 7 4.0773 -8.3524 2.6683
28 6 4.1677 -7.2366 3.3664
29 6 4.2407 -6.0112 2.7367
30 7 3.6621 -3.5623 0.9474
31 1 -0.4850 0.8400 -0.0004
32 1 3.8785 -0.6827 -0.8832
33 1 3.8711 -0.6777 0.8968
34 1 5.3060 -2.6062 -1.7188
35 1 5.4271 -6.3386 -1.3594
36 1 6.2005 -4.9972 -2.2373
37 1 7.4791 -7.6981 -0.4827
38 1 7.8708 -6.8776 -2.0255
39 1 10.1950 -8.0429 -1.6026
40 1 10.6784 -3.6302 -1.1282
41 1 8.1462 -4.1931 -1.7569
42 1 7.8965 -3.6294 -0.0757
43 1 4.0920 -7.1765 -0.4394
44 1 3.9782 -9.2887 0.8172
45 1 4.1847 -7.2830 4.4453
46 1 4.3141 -5.1017 3.3145
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000434984896.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:08:27
Heat of formation + Delta-G solvation = 35.098663 kcal
Electronic energy + Delta-G solvation = -30013.698833 eV
Core-core repulsion = 25905.571091 eV
Total energy + Delta-G solvation = -4108.127742 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.164 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-40.93884 -39.67522 -39.56829 -36.22529 -36.09896 -34.21789 -32.88401 -31.84719
-31.15388 -30.82973 -29.09693 -28.29782 -27.63888 -24.90502 -24.18566 -23.23434
-22.10973 -21.53570 -20.94726 -20.18774 -19.44500 -18.34475 -17.19237 -16.76466
-16.52865 -16.40048 -15.98031 -15.78755 -15.48980 -14.93038 -14.66109 -14.56052
-14.47021 -14.17528 -13.72668 -13.62051 -13.59178 -13.30253 -13.10841 -12.77901
-12.69003 -12.58484 -12.30306 -12.18439 -11.81766 -11.68787 -11.26970 -11.16247
-10.89651 -10.84304 -10.50586 -10.40400 -10.18318 -10.03866 -9.86333 -9.53493
-9.38302 -9.02065 -8.86143 -8.67490 -8.54610 -7.84362 -6.32450 -4.36168
1.22336 1.30132 2.46299 3.00242 3.07327 3.12863 3.13740 3.25898
3.60406 4.01659 4.03812 4.13915 4.20891 4.33880 4.42195 4.55345
4.66822 4.87598 4.92362 4.96904 5.00059 5.04352 5.17097 5.21911
5.28581 5.30310 5.37716 5.45183 5.56600 5.60786 5.65079 5.73550
5.79949 5.85377 5.97389 6.05100 6.24747 6.28361 6.43731 6.63240
6.64095 6.80891 6.83051 6.99597 7.20580 7.27742 7.52669 7.57574
8.08030 8.19340 8.29957 8.76109 9.21388 10.80061
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.009234 B = 0.003499 C = 0.002696
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3031.704114 B = 8000.389561 C =10382.340541
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.884 5.884
2 C 0.078 3.922
3 Si 0.872 3.128
4 H -0.271 1.271
5 H -0.279 1.279
6 H -0.265 1.265
7 C -0.539 4.539
8 H 0.086 0.914
9 C 0.230 3.770
10 N -0.317 5.317
11 C 0.054 3.946
12 C -0.231 4.231
13 C 0.128 3.872
14 N -0.492 5.492
15 C -0.002 4.002
16 C 0.107 3.893
17 H 0.073 0.927
18 O -0.543 6.543
19 C 0.106 3.894
20 H 0.072 0.928
21 O -0.544 6.544
22 C 0.003 3.997
23 C 0.086 3.914
24 C 0.069 3.931
25 C -0.154 4.154
26 C 0.094 3.906
27 N -0.493 5.493
28 C 0.096 3.904
29 C -0.149 4.149
30 N -0.250 5.250
31 H 0.269 0.731
32 H 0.048 0.952
33 H 0.044 0.956
34 H 0.165 0.835
35 H 0.080 0.920
36 H 0.044 0.956
37 H 0.086 0.914
38 H 0.056 0.944
39 H 0.373 0.627
40 H 0.374 0.626
41 H 0.056 0.944
42 H 0.086 0.914
43 H 0.132 0.868
44 H 0.152 0.848
45 H 0.153 0.847
46 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.653 -13.022 -1.396 21.981
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.521 5.521
2 C -0.126 4.126
3 Si 0.698 3.302
4 H -0.197 1.197
5 H -0.204 1.204
6 H -0.189 1.189
7 C -0.577 4.577
8 H 0.104 0.896
9 C 0.111 3.889
10 N -0.096 5.096
11 C -0.095 4.095
12 C -0.244 4.244
13 C 0.000 4.000
14 N -0.217 5.217
15 C -0.130 4.130
16 C 0.048 3.952
17 H 0.091 0.909
18 O -0.347 6.347
19 C 0.046 3.954
20 H 0.090 0.910
21 O -0.348 6.348
22 C -0.125 4.125
23 C -0.077 4.077
24 C 0.059 3.941
25 C -0.175 4.175
26 C -0.062 4.062
27 N -0.203 5.203
28 C -0.060 4.060
29 C -0.170 4.170
30 N -0.074 5.074
31 H 0.080 0.920
32 H 0.066 0.934
33 H 0.062 0.938
34 H 0.182 0.818
35 H 0.098 0.902
36 H 0.062 0.938
37 H 0.105 0.895
38 H 0.074 0.926
39 H 0.219 0.781
40 H 0.220 0.780
41 H 0.075 0.925
42 H 0.105 0.895
43 H 0.150 0.850
44 H 0.170 0.830
45 H 0.171 0.829
46 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges 16.617 -12.963 0.247 21.077
hybrid contribution 0.649 1.757 -1.775 2.580
sum 17.266 -11.207 -1.528 20.641
Atomic orbital electron populations
1.69862 1.06166 1.27438 1.48615 1.24822 0.94863 0.98786 0.94129
0.86919 0.80419 0.83887 0.78935 1.19678 1.20387 1.18920 1.21060
0.87552 0.95798 1.53247 0.89609 1.20099 0.97674 0.72826 0.98290
1.48951 1.31276 1.10989 1.18413 1.22213 0.96133 0.94189 0.96963
1.19454 1.08513 0.94891 1.01535 1.20449 0.88913 0.97729 0.92906
1.65394 1.03112 1.01337 1.51896 1.23911 0.94061 0.95613 0.99452
1.22605 0.87731 0.93113 0.91795 0.90932 1.86712 1.58572 1.27937
1.61462 1.22623 0.86968 0.92324 0.93482 0.90975 1.86689 1.56562
1.27220 1.64286 1.23906 0.91772 0.96019 1.00814 1.20254 0.98885
0.92626 0.95945 1.18051 0.93716 0.90028 0.92262 1.22075 1.01837
0.92372 1.01215 1.22533 0.96254 0.97456 0.89971 1.67585 1.12684
1.31387 1.08631 1.22584 0.95790 0.87481 1.00131 1.22224 1.00713
0.99794 0.94285 1.77747 1.20748 0.95608 1.13295 0.92040 0.93429
0.93826 0.81758 0.90219 0.93803 0.89548 0.92596 0.78119 0.77991
0.92546 0.89540 0.84984 0.83041 0.82929 0.84692
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.98 13.96 55.43 0.77 -25.20 16
2 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16
3 Si 0.87 19.51 27.47 -169.99 -4.67 14.84 16
4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16
5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
6 H -0.26 -5.57 6.54 56.52 0.37 -5.20 16
7 C -0.54 -14.69 9.79 -34.44 -0.34 -15.03 16
8 H 0.09 2.68 8.06 -52.48 -0.42 2.25 16
9 C 0.23 5.15 5.33 -5.20 -0.03 5.12 16
10 N -0.32 -6.58 3.67 -62.59 -0.23 -6.81 16
11 C 0.05 0.91 11.32 -17.26 -0.20 0.71 16
12 C -0.23 -3.59 5.43 -104.75 -0.57 -4.16 16
13 C 0.13 1.53 4.88 -4.97 -0.02 1.51 16
14 N -0.49 -5.51 5.29 -231.42 -1.22 -6.73 16
15 C 0.00 -0.02 6.14 -2.19 -0.01 -0.03 16
16 C 0.11 1.02 4.42 -25.35 -0.11 0.91 16
17 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16
18 O -0.54 -5.47 12.45 -56.60 -0.70 -6.18 16
19 C 0.11 1.06 4.42 -25.35 -0.11 0.95 16
20 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
21 O -0.54 -5.80 12.44 -56.60 -0.70 -6.50 16
22 C 0.00 0.04 6.01 -2.18 -0.01 0.02 16
23 C 0.09 1.54 6.72 -82.78 -0.56 0.99 16
24 C 0.07 1.08 5.77 -104.58 -0.60 0.47 16
25 C -0.15 -1.99 9.01 -39.11 -0.35 -2.34 16
26 C 0.09 1.13 11.17 -17.61 -0.20 0.94 16
27 N -0.49 -6.66 10.35 -13.35 -0.14 -6.80 16
28 C 0.10 1.25 11.17 -17.61 -0.20 1.05 16
29 C -0.15 -2.17 9.89 -39.11 -0.39 -2.56 16
30 N -0.25 -5.38 12.45 33.42 0.42 -4.97 16
31 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16
32 H 0.05 0.96 7.50 -51.93 -0.39 0.57 16
33 H 0.04 0.98 7.19 -51.93 -0.37 0.61 16
34 H 0.17 2.18 8.06 -52.49 -0.42 1.76 16
35 H 0.08 0.88 5.65 -51.93 -0.29 0.59 16
36 H 0.04 0.49 7.63 -51.93 -0.40 0.09 16
37 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16
38 H 0.06 0.52 7.94 -51.93 -0.41 0.11 16
39 H 0.37 2.02 9.11 45.56 0.41 2.44 16
40 H 0.37 2.39 9.12 45.56 0.42 2.81 16
41 H 0.06 0.61 7.62 -51.93 -0.40 0.21 16
42 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16
43 H 0.13 1.50 6.27 -52.49 -0.33 1.17 16
44 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16
45 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16
46 H 0.14 1.95 8.06 -52.48 -0.42 1.53 16
LS Contribution 384.96 15.07 5.80 5.80
Total: -1.00 -34.84 384.96 -9.21 -44.04
By element:
Atomic # 1 Polarization: 12.65 SS G_CDS: -4.73 Total: 7.91 kcal
Atomic # 6 Polarization: -5.60 SS G_CDS: -3.79 Total: -9.40 kcal
Atomic # 7 Polarization: -50.12 SS G_CDS: -0.40 Total: -50.52 kcal
Atomic # 8 Polarization: -11.27 SS G_CDS: -1.41 Total: -12.68 kcal
Atomic # 14 Polarization: 19.51 SS G_CDS: -4.67 Total: 14.84 kcal
Total LS contribution 5.80 Total: 5.80 kcal
Total: -34.84 -9.21 -44.04 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000434984896.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.143 kcal
(2) G-P(sol) polarization free energy of solvation -34.839 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.304 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.044 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.099 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds