Wall clock time and date at job start Sat Apr 11 2020 07:08:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31507 * 1
3 3 Si 1.86806 * 119.99833 * 2 1
4 4 H 1.48500 * 109.46997 * 269.99787 * 3 2 1
5 5 H 1.48500 * 109.47193 * 29.99945 * 3 2 1
6 6 H 1.48505 * 109.46803 * 149.99917 * 3 2 1
7 7 C 1.37878 * 120.00392 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99519 * 0.02562 * 7 2 1
9 9 C 1.50696 * 120.00345 * 180.27432 * 7 2 1
10 10 N 1.46495 * 109.47250 * 179.72318 * 9 7 2
11 11 C 1.35058 * 125.92738 * 125.00367 * 10 9 7
12 12 C 1.35066 * 107.98469 * 179.97438 * 11 10 9
13 13 C 1.50707 * 126.07146 * 179.97438 * 12 11 10
14 14 N 1.46898 * 109.46960 * 104.95980 * 13 12 11
15 15 C 1.48554 * 110.99953 * 164.44759 * 14 13 12
16 16 C 1.54378 * 104.59470 * 159.03661 * 15 14 13
17 17 H 1.09010 * 110.32167 * 95.04295 * 16 15 14
18 18 O 1.42900 * 110.32597 * 217.24858 * 16 15 14
19 19 C 1.54259 * 105.06400 * 336.15016 * 16 15 14
20 20 H 1.08993 * 110.32404 * 118.89049 * 19 16 15
21 21 O 1.42896 * 110.32007 * 241.10272 * 19 16 15
22 22 C 1.48557 * 110.99988 * 279.86470 * 14 13 12
23 23 C 1.40867 * 107.85326 * 359.97438 * 12 11 10
24 24 C 1.48364 * 126.03986 * 179.97438 * 23 12 11
25 25 C 1.39770 * 120.90591 * 317.35670 * 24 23 12
26 26 C 1.37965 * 119.02066 * 179.75364 * 25 24 23
27 27 N 1.31935 * 120.87943 * 0.53209 * 26 25 24
28 28 C 1.31927 * 122.00431 * 359.72136 * 27 26 25
29 29 C 1.37960 * 120.88216 * 0.02562 * 28 27 26
30 30 N 1.31650 * 107.91591 * 359.74200 * 23 12 11
31 31 H 0.97001 * 120.00249 * 0.02562 * 1 2 3
32 32 H 1.09002 * 109.47160 * 299.72592 * 9 7 2
33 33 H 1.08998 * 109.46962 * 59.72644 * 9 7 2
34 34 H 1.07997 * 126.00461 * 359.97438 * 11 10 9
35 35 H 1.09000 * 109.47092 * 224.95867 * 13 12 11
36 36 H 1.09001 * 109.47139 * 344.95690 * 13 12 11
37 37 H 1.08999 * 110.41264 * 277.81490 * 15 14 13
38 38 H 1.08998 * 110.41490 * 40.26003 * 15 14 13
39 39 H 0.96699 * 114.00308 * 298.54905 * 18 16 15
40 40 H 0.96705 * 113.99741 * 179.97438 * 21 19 16
41 41 H 1.08998 * 110.41312 * 319.74459 * 22 14 13
42 42 H 1.09002 * 110.41050 * 82.18261 * 22 14 13
43 43 H 1.08002 * 120.48853 * 0.02562 * 25 24 23
44 44 H 1.08001 * 119.55981 * 180.25077 * 26 25 24
45 45 H 1.07999 * 119.56119 * 180.02562 * 28 27 26
46 46 H 1.08004 * 120.48905 * 179.97438 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0464 -1.4001
5 1 1.4465 2.6527 0.7000
6 1 3.5466 1.4402 0.7001
7 6 2.0045 -1.1940 0.0005
8 1 1.4645 -2.1293 0.0005
9 6 3.5115 -1.1940 0.0068
10 7 3.9998 -2.5752 0.0128
11 6 4.8592 -3.1157 -0.8779
12 6 5.0615 -4.4056 -0.5322
13 6 5.9497 -5.3882 -1.2512
14 7 7.1815 -5.5920 -0.4774
15 6 7.9054 -6.8045 -0.9385
16 6 9.3580 -6.5962 -0.4589
17 1 9.5147 -7.0907 0.4998
18 8 10.2782 -7.0947 -1.4319
19 6 9.5147 -5.0693 -0.3061
20 1 9.7482 -4.8142 0.7275
21 8 10.5357 -4.5852 -1.1808
22 6 8.1436 -4.4834 -0.7063
23 6 4.2949 -4.6693 0.6198
24 6 4.2186 -5.9642 1.3400
25 6 4.1165 -7.1699 0.6403
26 6 4.0531 -8.3518 1.3491
27 7 4.0773 -8.3524 2.6683
28 6 4.1677 -7.2366 3.3664
29 6 4.2407 -6.0112 2.7367
30 7 3.6621 -3.5623 0.9474
31 1 -0.4850 0.8400 -0.0004
32 1 3.8785 -0.6827 -0.8832
33 1 3.8711 -0.6777 0.8968
34 1 5.3060 -2.6062 -1.7188
35 1 5.4271 -6.3386 -1.3594
36 1 6.2005 -4.9972 -2.2373
37 1 7.4791 -7.6981 -0.4827
38 1 7.8708 -6.8776 -2.0255
39 1 10.1950 -8.0429 -1.6026
40 1 10.6784 -3.6302 -1.1282
41 1 8.1462 -4.1931 -1.7569
42 1 7.8965 -3.6294 -0.0757
43 1 4.0920 -7.1765 -0.4394
44 1 3.9782 -9.2887 0.8172
45 1 4.1847 -7.2830 4.4453
46 1 4.3141 -5.1017 3.3145
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000434984896.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:08:26
Heat of formation + Delta-G solvation = 5.741863 kcal
Electronic energy + Delta-G solvation = -30014.971840 eV
Core-core repulsion = 25905.571091 eV
Total energy + Delta-G solvation = -4109.400748 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.164 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-42.24358 -40.67733 -40.43543 -37.07780 -36.82921 -35.80017 -34.52611 -33.00791
-32.47050 -31.95351 -30.30698 -29.22156 -28.93940 -25.97794 -25.62927 -24.26703
-23.51820 -22.46359 -21.70370 -21.52162 -20.71027 -19.14878 -19.08073 -18.01731
-17.32668 -17.24503 -17.15175 -16.96513 -16.59537 -16.24254 -15.74249 -15.66418
-15.50160 -15.28825 -14.84739 -14.74210 -14.65367 -14.52019 -14.37868 -14.05882
-13.89043 -13.59135 -13.51859 -13.35044 -13.00098 -12.70169 -12.56240 -12.49233
-12.23403 -12.06391 -11.85306 -11.64617 -11.50177 -11.21035 -10.92801 -10.90294
-10.76278 -10.42732 -10.03098 -9.95786 -9.50400 -9.18171 -8.41687 -6.52672
0.08730 0.28415 1.12326 1.32127 1.35099 1.44548 1.72748 1.85947
2.24616 2.83763 2.90392 2.98958 3.37359 3.40655 3.47427 3.61308
3.64958 3.69373 3.82871 4.03738 4.16444 4.17108 4.19476 4.23527
4.26679 4.28379 4.44097 4.53197 4.57651 4.64959 4.69262 4.78885
4.84731 4.89134 4.92745 4.95280 5.00157 5.01716 5.11824 5.20618
5.45938 5.69886 5.79871 5.84218 5.91017 5.99990 6.34448 6.53012
6.76370 6.88739 6.99361 7.06579 7.10573 8.75452
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.009234 B = 0.003499 C = 0.002696
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3031.704114 B = 8000.389561 C =10382.340541
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.941 5.941
2 C 0.015 3.985
3 Si 0.955 3.045
4 H -0.252 1.252
5 H -0.281 1.281
6 H -0.240 1.240
7 C -0.548 4.548
8 H 0.025 0.975
9 C 0.239 3.761
10 N -0.345 5.345
11 C 0.052 3.948
12 C -0.222 4.222
13 C 0.134 3.866
14 N -0.504 5.504
15 C 0.006 3.994
16 C 0.107 3.893
17 H 0.081 0.919
18 O -0.562 6.562
19 C 0.104 3.896
20 H 0.076 0.924
21 O -0.561 6.561
22 C 0.009 3.991
23 C 0.090 3.910
24 C 0.043 3.957
25 C -0.150 4.150
26 C 0.102 3.898
27 N -0.504 5.504
28 C 0.099 3.901
29 C -0.165 4.165
30 N -0.315 5.315
31 H 0.273 0.727
32 H 0.079 0.921
33 H 0.043 0.957
34 H 0.200 0.800
35 H 0.092 0.908
36 H 0.057 0.943
37 H 0.099 0.901
38 H 0.059 0.941
39 H 0.391 0.609
40 H 0.389 0.611
41 H 0.056 0.944
42 H 0.075 0.925
43 H 0.149 0.851
44 H 0.189 0.811
45 H 0.178 0.822
46 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.333 -13.916 -2.432 24.759
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.580 5.580
2 C -0.184 4.184
3 Si 0.776 3.224
4 H -0.176 1.176
5 H -0.206 1.206
6 H -0.164 1.164
7 C -0.586 4.586
8 H 0.043 0.957
9 C 0.119 3.881
10 N -0.125 5.125
11 C -0.095 4.095
12 C -0.235 4.235
13 C 0.006 3.994
14 N -0.229 5.229
15 C -0.122 4.122
16 C 0.047 3.953
17 H 0.099 0.901
18 O -0.369 6.369
19 C 0.044 3.956
20 H 0.094 0.906
21 O -0.367 6.367
22 C -0.120 4.120
23 C -0.074 4.074
24 C 0.033 3.967
25 C -0.171 4.171
26 C -0.055 4.055
27 N -0.214 5.214
28 C -0.057 4.057
29 C -0.186 4.186
30 N -0.139 5.139
31 H 0.082 0.918
32 H 0.097 0.903
33 H 0.061 0.939
34 H 0.217 0.783
35 H 0.110 0.890
36 H 0.075 0.925
37 H 0.117 0.883
38 H 0.077 0.923
39 H 0.240 0.760
40 H 0.238 0.762
41 H 0.075 0.925
42 H 0.094 0.906
43 H 0.167 0.833
44 H 0.206 0.794
45 H 0.195 0.805
46 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges 19.331 -13.896 -0.798 23.821
hybrid contribution -0.196 1.814 -1.441 2.325
sum 19.135 -12.082 -2.238 22.741
Atomic orbital electron populations
1.70046 1.08609 1.28865 1.50456 1.25923 0.95747 1.03549 0.93165
0.85627 0.79449 0.77247 0.80109 1.17589 1.20643 1.16355 1.21201
0.90471 0.93676 1.53244 0.95679 1.19841 0.94153 0.74683 0.99402
1.48751 1.33245 1.10554 1.19924 1.22880 0.94981 0.94752 0.96915
1.19865 1.07921 0.95142 1.00532 1.20449 0.88846 0.97274 0.92875
1.65314 1.03150 1.02334 1.52149 1.23895 0.93645 0.94987 0.99668
1.22628 0.87738 0.92804 0.92145 0.90085 1.86664 1.58799 1.29827
1.61598 1.22663 0.86469 0.92918 0.93583 0.90613 1.86645 1.56666
1.28898 1.64537 1.23829 0.92030 0.95596 1.00502 1.20775 0.97695
0.92514 0.96382 1.18250 0.95600 0.89994 0.92826 1.22258 1.01114
0.91624 1.02069 1.23115 0.94299 0.98476 0.89592 1.67692 1.12930
1.31311 1.09480 1.22919 0.94721 0.86683 1.01338 1.22253 1.01862
1.00231 0.94237 1.77660 1.23448 0.97304 1.15451 0.91828 0.90296
0.93917 0.78336 0.89003 0.92502 0.88320 0.92308 0.75982 0.76191
0.92540 0.90644 0.83305 0.79389 0.80513 0.85812
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -57.74 13.96 21.45 0.30 -57.44 16
2 C 0.02 0.85 5.47 84.66 0.46 1.32 16
3 Si 0.95 40.15 27.47 68.60 1.88 42.04 16
4 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16
5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16
6 H -0.24 -9.10 6.54 99.48 0.65 -8.45 16
7 C -0.55 -31.25 9.79 25.60 0.25 -31.00 16
8 H 0.02 1.68 8.06 -2.91 -0.02 1.66 16
9 C 0.24 10.76 5.33 85.63 0.46 11.21 16
10 N -0.34 -14.58 3.67 -351.93 -1.29 -15.87 16
11 C 0.05 1.70 11.32 83.47 0.94 2.65 16
12 C -0.22 -6.71 5.43 -19.95 -0.11 -6.81 16
13 C 0.13 2.89 4.88 85.56 0.42 3.31 16
14 N -0.50 -10.17 5.29 -886.07 -4.69 -14.85 16
15 C 0.01 0.10 6.14 86.45 0.53 0.63 16
16 C 0.11 1.78 4.42 31.49 0.14 1.92 16
17 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16
18 O -0.56 -10.00 12.45 -128.55 -1.60 -11.60 16
19 C 0.10 1.89 4.42 31.49 0.14 2.03 16
20 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16
21 O -0.56 -10.98 12.44 -128.55 -1.60 -12.58 16
22 C 0.01 0.17 6.01 86.45 0.52 0.69 16
23 C 0.09 3.27 6.72 42.51 0.29 3.56 16
24 C 0.04 1.34 5.77 -19.84 -0.11 1.22 16
25 C -0.15 -3.60 9.01 22.58 0.20 -3.40 16
26 C 0.10 2.16 11.17 84.61 0.95 3.10 16
27 N -0.50 -12.57 10.35 -196.14 -2.03 -14.60 16
28 C 0.10 2.48 11.17 84.61 0.95 3.42 16
29 C -0.16 -4.86 9.89 22.58 0.22 -4.64 16
30 N -0.31 -14.20 12.45 -48.17 -0.60 -14.80 16
31 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16
32 H 0.08 3.04 7.50 -2.39 -0.02 3.02 16
33 H 0.04 1.91 7.19 -2.39 -0.02 1.89 16
34 H 0.20 4.77 8.06 -2.91 -0.02 4.75 16
35 H 0.09 1.76 5.65 -2.39 -0.01 1.74 16
36 H 0.06 1.10 7.63 -2.39 -0.02 1.08 16
37 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16
38 H 0.06 0.90 7.94 -2.39 -0.02 0.88 16
39 H 0.39 3.26 9.11 -74.06 -0.67 2.59 16
40 H 0.39 4.38 9.12 -74.05 -0.68 3.70 16
41 H 0.06 1.09 7.62 -2.39 -0.02 1.07 16
42 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16
43 H 0.15 2.99 6.27 -2.91 -0.02 2.97 16
44 H 0.19 2.54 8.06 -2.91 -0.02 2.51 16
45 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16
46 H 0.12 3.82 8.06 -2.91 -0.02 3.79 16
Total: -1.00 -80.45 384.96 -3.75 -84.20
By element:
Atomic # 1 Polarization: 26.66 SS G_CDS: -0.37 Total: 26.29 kcal
Atomic # 6 Polarization: -17.02 SS G_CDS: 6.24 Total: -10.78 kcal
Atomic # 7 Polarization: -109.26 SS G_CDS: -8.31 Total: -117.57 kcal
Atomic # 8 Polarization: -20.98 SS G_CDS: -3.20 Total: -24.18 kcal
Atomic # 14 Polarization: 40.15 SS G_CDS: 1.88 Total: 42.04 kcal
Total: -80.45 -3.75 -84.20 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000434984896.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.946 kcal
(2) G-P(sol) polarization free energy of solvation -80.450 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.497 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.755 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.204 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.742 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds