Wall clock time and date at job start Sat Apr 11 2020 07:08:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31559 * 1
3 3 Si 1.86796 * 119.99790 * 2 1
4 4 H 1.48502 * 109.46956 * 240.00160 * 3 2 1
5 5 H 1.48503 * 109.47336 * 0.02562 * 3 2 1
6 6 H 1.48497 * 109.47317 * 120.00208 * 3 2 1
7 7 C 1.38654 * 120.00010 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99653 * 180.02562 * 7 2 1
9 9 O 1.34828 * 119.99735 * 359.97438 * 7 2 1
10 10 C 1.35755 * 116.99839 * 185.05839 * 9 7 2
11 11 C 1.38877 * 120.06730 * 354.46354 * 10 9 7
12 12 C 1.38105 * 119.93064 * 180.02562 * 11 10 9
13 13 C 1.38292 * 120.06706 * 0.02605 * 12 11 10
14 14 C 1.50703 * 119.93111 * 179.97438 * 13 12 11
15 15 N 1.46899 * 109.47563 * 89.99490 * 14 13 12
16 16 C 1.46897 * 110.99892 * 180.02562 * 15 14 13
17 17 C 1.53004 * 109.46954 * 180.02562 * 16 15 14
18 18 N 1.46498 * 109.47079 * 180.02562 * 17 16 15
19 19 C 1.34780 * 119.99815 * 180.02562 * 18 17 16
20 20 O 1.21280 * 120.00312 * 359.97438 * 19 18 17
21 21 C 1.50697 * 119.99711 * 180.02562 * 19 18 17
22 22 N 1.46510 * 109.47069 * 179.97438 * 21 19 18
23 23 C 1.34942 * 126.03212 * 124.99934 * 22 21 19
24 24 C 1.35315 * 107.74134 * 179.74037 * 23 22 21
25 25 C 1.39870 * 107.92392 * 359.97438 * 24 23 22
26 26 N 1.30836 * 108.19730 * 0.02562 * 25 24 23
27 27 C 1.38303 * 120.14183 * 0.24655 * 13 12 11
28 28 C 1.38102 * 120.06758 * 359.45972 * 27 13 12
29 29 H 0.96998 * 120.00066 * 359.97438 * 1 2 3
30 30 H 1.08003 * 120.03757 * 0.02562 * 11 10 9
31 31 H 1.08000 * 119.96162 * 180.02562 * 12 11 10
32 32 H 1.09002 * 109.46733 * 329.99763 * 14 13 12
33 33 H 1.08999 * 109.47095 * 209.99904 * 14 13 12
34 34 H 1.00898 * 110.99661 * 56.04642 * 15 14 13
35 35 H 1.08996 * 109.47082 * 60.00824 * 16 15 14
36 36 H 1.08994 * 109.47830 * 300.00073 * 16 15 14
37 37 H 1.08997 * 109.47057 * 60.00175 * 17 16 15
38 38 H 1.09003 * 109.47163 * 300.00634 * 17 16 15
39 39 H 0.97001 * 119.99820 * 0.02562 * 18 17 16
40 40 H 1.09005 * 109.47558 * 60.00477 * 21 19 18
41 41 H 1.08994 * 109.47606 * 299.99706 * 21 19 18
42 42 H 1.07996 * 126.13573 * 359.71526 * 23 22 21
43 43 H 1.08006 * 126.03847 * 179.97438 * 24 23 22
44 44 H 1.07995 * 125.90123 * 179.97438 * 25 24 23
45 45 H 1.07997 * 119.96636 * 179.70130 * 27 13 12
46 46 H 1.07998 * 120.03877 * 180.26765 * 28 27 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2495 1.6177 0.0000
4 1 3.1032 1.6964 -1.2125
5 1 1.2845 2.7465 0.0006
6 1 3.1033 1.6964 1.2124
7 6 2.0089 -1.2008 -0.0005
8 1 3.0889 -1.2007 -0.0001
9 8 1.3347 -2.3684 -0.0005
10 6 2.0700 -3.5046 0.1056
11 6 3.4572 -3.4395 0.0921
12 6 4.2024 -4.5972 0.1997
13 6 3.5687 -5.8204 0.3202
14 6 4.3850 -7.0819 0.4369
15 7 4.6576 -7.3597 1.8534
16 6 5.4537 -8.5848 2.0059
17 6 5.7161 -8.8408 3.4913
18 7 6.5106 -10.0622 3.6434
19 6 6.8641 -10.4875 4.8725
20 8 6.5250 -9.8587 5.8526
21 6 7.6818 -11.7436 5.0289
22 7 7.9330 -11.9889 6.4513
23 6 7.6406 -13.1207 7.1254
24 6 8.0330 -12.9491 8.4090
25 6 8.5846 -11.6689 8.5231
26 7 8.5250 -11.0923 7.3502
27 6 2.1874 -5.8892 0.3283
28 6 1.4366 -4.7346 0.2272
29 1 -0.4850 0.8400 0.0004
30 1 3.9527 -2.4845 -0.0024
31 1 5.2812 -4.5471 0.1897
32 1 5.3272 -6.9555 -0.0964
33 1 3.8310 -7.9145 0.0034
34 1 3.8001 -7.4171 2.3820
35 1 6.4033 -8.4683 1.4836
36 1 4.9075 -9.4280 1.5832
37 1 4.7664 -8.9574 4.0132
38 1 6.2621 -7.9976 3.9145
39 1 6.7821 -10.5649 2.8595
40 1 8.6319 -11.6260 4.5076
41 1 7.1368 -12.5871 4.6052
42 1 7.1763 -14.0048 6.7143
43 1 7.9371 -13.6730 9.2049
44 1 8.9890 -11.2315 9.4239
45 1 1.6955 -6.8465 0.4177
46 1 0.3580 -4.7884 0.2379
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001123516157.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:08:58
Heat of formation + Delta-G solvation = 52.908907 kcal
Electronic energy + Delta-G solvation = -27125.452322 eV
Core-core repulsion = 23018.096890 eV
Total energy + Delta-G solvation = -4107.355432 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.164 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-41.53002 -39.89513 -39.10213 -37.36290 -36.20003 -34.53735 -33.74096 -32.32687
-30.75741 -30.37148 -30.17305 -28.66281 -27.08666 -25.50231 -23.94919 -22.53203
-21.97859 -21.82913 -21.43054 -20.62501 -20.43929 -17.99802 -17.89534 -17.67704
-16.96444 -16.44772 -16.19759 -15.98496 -15.04580 -14.90618 -14.72751 -14.55992
-14.46907 -14.13799 -14.06956 -13.76900 -13.64310 -13.49595 -13.29144 -13.14613
-13.05056 -12.70593 -12.68623 -12.14354 -11.84096 -11.74452 -11.51284 -11.25371
-10.95103 -10.80051 -10.74234 -10.60533 -10.48342 -10.44586 -9.69479 -9.50776
-9.34675 -8.95146 -8.84413 -8.53143 -8.18923 -7.21156 -6.45837 -4.04745
1.50523 1.96692 2.12925 2.19873 2.25047 2.58409 2.69891 3.13227
3.14862 3.17314 3.96286 3.97547 4.10722 4.25426 4.41264 4.45541
4.60334 4.65300 4.72197 4.82015 5.08497 5.13406 5.20282 5.23889
5.30238 5.35910 5.41922 5.58655 5.66100 5.67098 5.71406 5.77625
5.85027 5.94247 6.19501 6.30515 6.40675 6.54895 6.67513 6.84373
6.90195 6.98589 7.06605 7.16211 7.31156 7.39037 7.39321 7.43735
7.74040 7.80992 7.99091 8.99727 9.69108 10.71978
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.020096 B = 0.001359 C = 0.001312
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1392.990691 B =20601.082458 C =21340.448599
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.862 5.862
2 C 0.040 3.960
3 Si 0.941 3.059
4 H -0.270 1.270
5 H -0.278 1.278
6 H -0.269 1.269
7 C -0.393 4.393
8 H 0.092 0.908
9 O -0.177 6.177
10 C 0.156 3.844
11 C -0.236 4.236
12 C -0.047 4.047
13 C -0.190 4.190
14 C 0.122 3.878
15 N -0.682 5.682
16 C 0.049 3.951
17 C 0.121 3.879
18 N -0.728 5.728
19 C 0.497 3.503
20 O -0.504 6.504
21 C 0.117 3.883
22 N -0.366 5.366
23 C 0.050 3.950
24 C -0.270 4.270
25 C 0.040 3.960
26 N -0.267 5.267
27 C -0.068 4.068
28 C -0.194 4.194
29 H 0.271 0.729
30 H 0.127 0.873
31 H 0.107 0.893
32 H 0.071 0.929
33 H 0.029 0.971
34 H 0.345 0.655
35 H 0.077 0.923
36 H 0.033 0.967
37 H 0.068 0.932
38 H 0.080 0.920
39 H 0.400 0.600
40 H 0.115 0.885
41 H 0.125 0.875
42 H 0.174 0.826
43 H 0.148 0.852
44 H 0.183 0.817
45 H 0.107 0.893
46 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.665 -28.096 7.094 32.941
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.497 5.497
2 C -0.164 4.164
3 Si 0.766 3.234
4 H -0.195 1.195
5 H -0.203 1.203
6 H -0.195 1.195
7 C -0.469 4.469
8 H 0.109 0.891
9 O -0.080 6.080
10 C 0.102 3.898
11 C -0.255 4.255
12 C -0.066 4.066
13 C -0.191 4.191
14 C -0.006 4.006
15 N -0.314 5.314
16 C -0.081 4.081
17 C -0.003 4.003
18 N -0.382 5.382
19 C 0.280 3.720
20 O -0.377 6.377
21 C -0.009 4.009
22 N -0.149 5.149
23 C -0.095 4.095
24 C -0.299 4.299
25 C -0.147 4.147
26 N -0.087 5.087
27 C -0.087 4.087
28 C -0.213 4.213
29 H 0.081 0.919
30 H 0.144 0.856
31 H 0.125 0.875
32 H 0.089 0.911
33 H 0.047 0.953
34 H 0.164 0.836
35 H 0.095 0.905
36 H 0.051 0.949
37 H 0.086 0.914
38 H 0.099 0.901
39 H 0.234 0.766
40 H 0.133 0.867
41 H 0.143 0.857
42 H 0.191 0.809
43 H 0.166 0.834
44 H 0.200 0.800
45 H 0.125 0.875
46 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges 15.739 -25.901 6.999 31.105
hybrid contribution -0.314 -0.851 -0.155 0.920
sum 15.424 -26.752 6.844 31.629
Atomic orbital electron populations
1.70028 1.05974 1.27818 1.45885 1.25290 0.95840 0.98846 0.96469
0.85781 0.78712 0.79728 0.79225 1.19487 1.20261 1.19453 1.21294
0.91811 0.80806 1.52980 0.89060 1.83975 1.34419 1.11502 1.78129
1.19408 0.90341 0.88034 0.91990 1.21173 0.93777 0.98976 1.11566
1.20568 0.98320 0.91544 0.96173 1.19066 0.93081 0.93918 1.13036
1.20605 0.98295 0.94335 0.87388 1.60439 1.24948 1.34497 1.11542
1.22065 0.99250 0.91954 0.94825 1.21317 0.95939 0.86431 0.96584
1.45814 1.56248 1.28287 1.07882 1.20513 0.81011 0.86802 0.83662
1.90834 1.52922 1.56089 1.37870 1.21440 1.02014 0.98361 0.79051
1.48072 1.47701 1.11275 1.07851 1.22537 1.01764 0.91813 0.93387
1.21519 1.11913 0.99574 0.96899 1.23963 1.00118 0.94000 0.96615
1.77526 1.16950 1.14454 0.99774 1.20470 0.92949 0.96589 0.98661
1.20167 0.99493 0.90329 1.11334 0.91949 0.85565 0.87472 0.91054
0.95277 0.83602 0.90463 0.94935 0.91387 0.90140 0.76578 0.86728
0.85729 0.80931 0.83436 0.79994 0.87508 0.86600
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -25.30 13.67 55.48 0.76 -24.55 16
2 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16
3 Si 0.94 20.58 29.55 -169.99 -5.02 15.55 16
4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16
5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16
6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16
7 C -0.39 -11.00 9.49 30.89 0.29 -10.71 16
8 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16
9 O -0.18 -5.07 9.76 0.04 0.00 -5.07 16
10 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16
11 C -0.24 -5.11 9.17 -39.39 -0.36 -5.47 16
12 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16
13 C -0.19 -3.09 5.40 -104.58 -0.56 -3.66 16
14 C 0.12 1.49 5.81 -4.98 -0.03 1.46 16
15 N -0.68 -7.69 6.49 -115.06 -0.75 -8.44 16
16 C 0.05 0.39 5.80 -3.82 -0.02 0.37 16
17 C 0.12 1.06 5.93 -4.04 -0.02 1.03 16
18 N -0.73 -4.64 5.56 -60.29 -0.33 -4.97 16
19 C 0.50 4.44 7.86 -10.99 -0.09 4.36 16
20 O -0.50 -7.39 15.72 5.56 0.09 -7.30 16
21 C 0.12 0.61 6.99 -5.19 -0.04 0.57 16
22 N -0.37 -3.23 3.39 -62.54 -0.21 -3.44 16
23 C 0.05 0.34 11.45 -17.23 -0.20 0.14 16
24 C -0.27 -2.02 10.80 -40.01 -0.43 -2.45 16
25 C 0.04 0.38 12.03 -17.37 -0.21 0.17 16
26 N -0.27 -3.19 11.66 30.62 0.36 -2.83 16
27 C -0.07 -1.16 9.69 -39.61 -0.38 -1.55 16
28 C -0.19 -4.04 9.99 -39.39 -0.39 -4.44 16
29 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16
30 H 0.13 2.75 5.64 -52.48 -0.30 2.46 16
31 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16
32 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16
33 H 0.03 0.32 8.08 -51.93 -0.42 -0.10 16
34 H 0.35 3.94 8.72 -39.29 -0.34 3.60 16
35 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16
36 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16
37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16
39 H 0.40 1.06 8.47 -40.82 -0.35 0.71 16
40 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16
41 H 0.12 0.12 8.07 -51.93 -0.42 -0.30 16
42 H 0.17 0.46 8.06 -52.49 -0.42 0.04 16
43 H 0.15 0.74 8.06 -52.48 -0.42 0.32 16
44 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16
45 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16
46 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16
LS Contribution 399.00 15.07 6.01 6.01
Total: -1.00 -37.66 399.00 -8.59 -46.25
By element:
Atomic # 1 Polarization: 11.98 SS G_CDS: -6.30 Total: 5.68 kcal
Atomic # 6 Polarization: -13.71 SS G_CDS: -3.19 Total: -16.90 kcal
Atomic # 7 Polarization: -44.05 SS G_CDS: -0.18 Total: -44.23 kcal
Atomic # 8 Polarization: -12.46 SS G_CDS: 0.09 Total: -12.37 kcal
Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal
Total LS contribution 6.01 Total: 6.01 kcal
Total: -37.66 -8.59 -46.25 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001123516157.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.159 kcal
(2) G-P(sol) polarization free energy of solvation -37.661 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.498 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.250 kcal
(6) G-S(sol) free energy of system = (1) + (5) 52.909 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds