Wall clock time and date at job start Sat Apr 11 2020 07:08:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31559 * 1
3 3 Si 1.86796 * 119.99790 * 2 1
4 4 H 1.48502 * 109.46956 * 240.00160 * 3 2 1
5 5 H 1.48503 * 109.47336 * 0.02562 * 3 2 1
6 6 H 1.48497 * 109.47317 * 120.00208 * 3 2 1
7 7 C 1.38654 * 120.00010 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99653 * 180.02562 * 7 2 1
9 9 O 1.34828 * 119.99735 * 359.97438 * 7 2 1
10 10 C 1.35755 * 116.99839 * 185.05839 * 9 7 2
11 11 C 1.38877 * 120.06730 * 354.46354 * 10 9 7
12 12 C 1.38105 * 119.93064 * 180.02562 * 11 10 9
13 13 C 1.38292 * 120.06706 * 0.02605 * 12 11 10
14 14 C 1.50703 * 119.93111 * 179.97438 * 13 12 11
15 15 N 1.46899 * 109.47563 * 89.99490 * 14 13 12
16 16 C 1.46897 * 110.99892 * 180.02562 * 15 14 13
17 17 C 1.53004 * 109.46954 * 180.02562 * 16 15 14
18 18 N 1.46498 * 109.47079 * 180.02562 * 17 16 15
19 19 C 1.34780 * 119.99815 * 180.02562 * 18 17 16
20 20 O 1.21280 * 120.00312 * 359.97438 * 19 18 17
21 21 C 1.50697 * 119.99711 * 180.02562 * 19 18 17
22 22 N 1.46510 * 109.47069 * 179.97438 * 21 19 18
23 23 C 1.34942 * 126.03212 * 124.99934 * 22 21 19
24 24 C 1.35315 * 107.74134 * 179.74037 * 23 22 21
25 25 C 1.39870 * 107.92392 * 359.97438 * 24 23 22
26 26 N 1.30836 * 108.19730 * 0.02562 * 25 24 23
27 27 C 1.38303 * 120.14183 * 0.24655 * 13 12 11
28 28 C 1.38102 * 120.06758 * 359.45972 * 27 13 12
29 29 H 0.96998 * 120.00066 * 359.97438 * 1 2 3
30 30 H 1.08003 * 120.03757 * 0.02562 * 11 10 9
31 31 H 1.08000 * 119.96162 * 180.02562 * 12 11 10
32 32 H 1.09002 * 109.46733 * 329.99763 * 14 13 12
33 33 H 1.08999 * 109.47095 * 209.99904 * 14 13 12
34 34 H 1.00898 * 110.99661 * 56.04642 * 15 14 13
35 35 H 1.08996 * 109.47082 * 60.00824 * 16 15 14
36 36 H 1.08994 * 109.47830 * 300.00073 * 16 15 14
37 37 H 1.08997 * 109.47057 * 60.00175 * 17 16 15
38 38 H 1.09003 * 109.47163 * 300.00634 * 17 16 15
39 39 H 0.97001 * 119.99820 * 0.02562 * 18 17 16
40 40 H 1.09005 * 109.47558 * 60.00477 * 21 19 18
41 41 H 1.08994 * 109.47606 * 299.99706 * 21 19 18
42 42 H 1.07996 * 126.13573 * 359.71526 * 23 22 21
43 43 H 1.08006 * 126.03847 * 179.97438 * 24 23 22
44 44 H 1.07995 * 125.90123 * 179.97438 * 25 24 23
45 45 H 1.07997 * 119.96636 * 179.70130 * 27 13 12
46 46 H 1.07998 * 120.03877 * 180.26765 * 28 27 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2495 1.6177 0.0000
4 1 3.1032 1.6964 -1.2125
5 1 1.2845 2.7465 0.0006
6 1 3.1033 1.6964 1.2124
7 6 2.0089 -1.2008 -0.0005
8 1 3.0889 -1.2007 -0.0001
9 8 1.3347 -2.3684 -0.0005
10 6 2.0700 -3.5046 0.1056
11 6 3.4572 -3.4395 0.0921
12 6 4.2024 -4.5972 0.1997
13 6 3.5687 -5.8204 0.3202
14 6 4.3850 -7.0819 0.4369
15 7 4.6576 -7.3597 1.8534
16 6 5.4537 -8.5848 2.0059
17 6 5.7161 -8.8408 3.4913
18 7 6.5106 -10.0622 3.6434
19 6 6.8641 -10.4875 4.8725
20 8 6.5250 -9.8587 5.8526
21 6 7.6818 -11.7436 5.0289
22 7 7.9330 -11.9889 6.4513
23 6 7.6406 -13.1207 7.1254
24 6 8.0330 -12.9491 8.4090
25 6 8.5846 -11.6689 8.5231
26 7 8.5250 -11.0923 7.3502
27 6 2.1874 -5.8892 0.3283
28 6 1.4366 -4.7346 0.2272
29 1 -0.4850 0.8400 0.0004
30 1 3.9527 -2.4845 -0.0024
31 1 5.2812 -4.5471 0.1897
32 1 5.3272 -6.9555 -0.0964
33 1 3.8310 -7.9145 0.0034
34 1 3.8001 -7.4171 2.3820
35 1 6.4033 -8.4683 1.4836
36 1 4.9075 -9.4280 1.5832
37 1 4.7664 -8.9574 4.0132
38 1 6.2621 -7.9976 3.9145
39 1 6.7821 -10.5649 2.8595
40 1 8.6319 -11.6260 4.5076
41 1 7.1368 -12.5871 4.6052
42 1 7.1763 -14.0048 6.7143
43 1 7.9371 -13.6730 9.2049
44 1 8.9890 -11.2315 9.4239
45 1 1.6955 -6.8465 0.4177
46 1 0.3580 -4.7884 0.2379
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001123516157.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:08:57
Heat of formation + Delta-G solvation = 23.364471 kcal
Electronic energy + Delta-G solvation = -27126.733465 eV
Core-core repulsion = 23018.096890 eV
Total energy + Delta-G solvation = -4108.636574 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.164 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-42.07999 -40.79682 -40.56866 -38.75024 -37.31462 -35.44043 -34.34123 -34.22362
-31.91584 -31.72891 -30.96644 -29.60716 -27.93647 -27.29458 -25.14328 -23.62410
-23.21129 -22.50446 -21.96645 -21.90602 -21.23048 -19.83617 -18.84215 -18.46338
-18.22009 -17.20685 -16.89370 -16.73751 -16.43879 -16.16714 -15.99200 -15.61705
-15.50411 -15.40383 -15.14568 -14.83282 -14.64411 -14.52425 -14.33676 -14.24950
-14.16192 -13.63631 -13.58568 -13.39177 -13.10383 -12.96931 -12.64330 -12.49733
-12.31286 -12.26002 -12.14930 -12.00642 -11.55427 -11.23520 -11.17427 -10.79265
-10.31875 -10.18578 -9.76655 -9.49122 -9.36613 -8.90501 -8.47665 -6.15925
0.61404 0.67738 0.97600 1.34132 1.44722 1.50232 1.50306 1.54064
2.00795 2.11502 2.17452 2.80078 3.11987 3.47302 3.53029 3.69466
3.78651 3.91337 4.04573 4.08447 4.10323 4.16144 4.18712 4.22495
4.27011 4.49143 4.54323 4.61285 4.72683 4.73107 4.84663 4.92520
4.93445 4.96633 5.10468 5.16022 5.17586 5.31219 5.32256 5.57300
5.72781 5.73960 5.81957 6.02607 6.06400 6.12729 6.25900 6.41638
6.49572 6.80989 6.97083 7.18849 7.77998 8.75309
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.020096 B = 0.001359 C = 0.001312
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1392.990691 B =20601.082458 C =21340.448599
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.920 5.920
2 C -0.022 4.022
3 Si 1.018 2.982
4 H -0.256 1.256
5 H -0.271 1.271
6 H -0.260 1.260
7 C -0.415 4.415
8 H 0.100 0.900
9 O -0.234 6.234
10 C 0.112 3.888
11 C -0.247 4.247
12 C -0.050 4.050
13 C -0.161 4.161
14 C 0.127 3.873
15 N -0.700 5.700
16 C 0.061 3.939
17 C 0.127 3.873
18 N -0.708 5.708
19 C 0.492 3.508
20 O -0.572 6.572
21 C 0.116 3.884
22 N -0.375 5.375
23 C 0.057 3.943
24 C -0.287 4.287
25 C 0.024 3.976
26 N -0.328 5.328
27 C -0.059 4.059
28 C -0.207 4.207
29 H 0.273 0.727
30 H 0.115 0.885
31 H 0.136 0.864
32 H 0.087 0.913
33 H 0.055 0.945
34 H 0.344 0.656
35 H 0.091 0.909
36 H 0.059 0.941
37 H 0.053 0.947
38 H 0.049 0.951
39 H 0.423 0.577
40 H 0.139 0.861
41 H 0.176 0.824
42 H 0.218 0.782
43 H 0.168 0.832
44 H 0.194 0.806
45 H 0.149 0.851
46 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.037 -32.190 6.115 37.402
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.559 5.559
2 C -0.219 4.219
3 Si 0.837 3.163
4 H -0.180 1.180
5 H -0.195 1.195
6 H -0.184 1.184
7 C -0.491 4.491
8 H 0.118 0.882
9 O -0.141 6.141
10 C 0.062 3.938
11 C -0.266 4.266
12 C -0.069 4.069
13 C -0.162 4.162
14 C -0.001 4.001
15 N -0.333 5.333
16 C -0.069 4.069
17 C 0.002 3.998
18 N -0.363 5.363
19 C 0.277 3.723
20 O -0.449 6.449
21 C -0.009 4.009
22 N -0.159 5.159
23 C -0.088 4.088
24 C -0.316 4.316
25 C -0.162 4.162
26 N -0.149 5.149
27 C -0.077 4.077
28 C -0.226 4.226
29 H 0.082 0.918
30 H 0.133 0.867
31 H 0.154 0.846
32 H 0.105 0.895
33 H 0.073 0.927
34 H 0.162 0.838
35 H 0.109 0.891
36 H 0.077 0.923
37 H 0.071 0.929
38 H 0.068 0.932
39 H 0.261 0.739
40 H 0.156 0.844
41 H 0.194 0.806
42 H 0.234 0.766
43 H 0.185 0.815
44 H 0.211 0.789
45 H 0.167 0.833
46 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges 18.167 -30.081 5.972 35.645
hybrid contribution -0.923 -0.005 0.174 0.939
sum 17.244 -30.086 6.146 35.218
Atomic orbital electron populations
1.70175 1.07989 1.28837 1.48851 1.26571 0.96846 1.02685 0.95833
0.84667 0.77423 0.74358 0.79893 1.18024 1.19510 1.18414 1.21774
0.92479 0.81518 1.53351 0.88245 1.83935 1.36007 1.12640 1.81494
1.19988 0.91653 0.88021 0.94172 1.21271 0.93123 1.00115 1.12079
1.20930 0.99668 0.90999 0.95284 1.19668 0.93263 0.95260 1.07993
1.20601 0.98588 0.92532 0.88395 1.60326 1.25259 1.36949 1.10747
1.22014 0.99590 0.91368 0.93896 1.21079 0.95063 0.86450 0.97168
1.45607 1.55035 1.27386 1.08285 1.21273 0.80353 0.87444 0.83190
1.90814 1.55679 1.58344 1.40088 1.21848 1.03055 0.98019 0.77942
1.48356 1.47363 1.11328 1.08809 1.23284 1.00206 0.92270 0.93052
1.21895 1.12217 0.99275 0.98248 1.24371 1.00166 0.95048 0.96659
1.77422 1.19414 1.16832 1.01275 1.20923 0.93403 0.96844 0.96531
1.20461 0.99921 0.90648 1.11559 0.91847 0.86706 0.84632 0.89505
0.92655 0.83794 0.89110 0.92300 0.92877 0.93217 0.73924 0.84362
0.80632 0.76560 0.81463 0.78923 0.83290 0.87029
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -57.22 13.67 21.61 0.30 -56.93 16
2 C -0.02 -1.26 5.49 84.83 0.47 -0.80 16
3 Si 1.02 43.61 29.55 68.60 2.03 45.63 16
4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16
5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16
6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16
7 C -0.42 -24.66 9.49 67.92 0.64 -24.01 16
8 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16
9 O -0.23 -14.35 9.76 -22.77 -0.22 -14.58 16
10 C 0.11 5.65 6.65 22.58 0.15 5.80 16
11 C -0.25 -10.90 9.17 22.39 0.21 -10.69 16
12 C -0.05 -1.72 9.69 22.25 0.22 -1.51 16
13 C -0.16 -4.68 5.40 -19.84 -0.11 -4.79 16
14 C 0.13 2.43 5.81 85.56 0.50 2.92 16
15 N -0.70 -12.95 6.49 -517.94 -3.36 -16.31 16
16 C 0.06 0.69 5.80 86.31 0.50 1.19 16
17 C 0.13 1.97 5.93 86.38 0.51 2.48 16
18 N -0.71 -6.94 5.56 -463.06 -2.57 -9.51 16
19 C 0.49 7.93 7.86 87.66 0.69 8.62 16
20 O -0.57 -16.97 15.72 -3.03 -0.05 -17.01 16
21 C 0.12 0.82 6.99 85.63 0.60 1.42 16
22 N -0.38 -5.93 3.39 -351.79 -1.19 -7.12 16
23 C 0.06 0.61 11.45 83.54 0.96 1.57 16
24 C -0.29 -3.91 10.80 21.99 0.24 -3.67 16
25 C 0.02 0.45 12.03 85.24 1.03 1.48 16
26 N -0.33 -7.91 11.66 -57.03 -0.66 -8.58 16
27 C -0.06 -1.85 9.69 22.25 0.22 -1.64 16
28 C -0.21 -8.72 9.99 22.39 0.22 -8.50 16
29 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16
30 H 0.12 5.22 5.64 -2.91 -0.02 5.20 16
31 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16
32 H 0.09 1.49 8.08 -2.39 -0.02 1.47 16
33 H 0.06 0.84 8.08 -2.39 -0.02 0.82 16
34 H 0.34 6.65 8.72 -89.70 -0.78 5.87 16
35 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16
36 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16
37 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16
38 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16
39 H 0.42 0.30 8.47 -92.71 -0.79 -0.48 16
40 H 0.14 0.33 8.14 -2.38 -0.02 0.31 16
41 H 0.18 -0.64 8.07 -2.39 -0.02 -0.66 16
42 H 0.22 0.12 8.06 -2.91 -0.02 0.09 16
43 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16
44 H 0.19 2.69 8.06 -2.91 -0.02 2.67 16
45 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16
46 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16
Total: -1.00 -92.97 399.00 0.75 -92.22
By element:
Atomic # 1 Polarization: 22.87 SS G_CDS: -0.55 Total: 22.33 kcal
Atomic # 6 Polarization: -37.17 SS G_CDS: 7.03 Total: -30.13 kcal
Atomic # 7 Polarization: -90.96 SS G_CDS: -7.50 Total: -98.45 kcal
Atomic # 8 Polarization: -31.32 SS G_CDS: -0.27 Total: -31.59 kcal
Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal
Total: -92.97 0.75 -92.22 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001123516157.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 115.584 kcal
(2) G-P(sol) polarization free energy of solvation -92.965 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.619 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.745 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.220 kcal
(6) G-S(sol) free energy of system = (1) + (5) 23.364 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds