Wall clock time and date at job start Sat Apr 11 2020 07:10:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30730 * 1
3 3 Si 1.86804 * 119.99605 * 2 1
4 4 H 1.48500 * 109.46873 * 179.97438 * 3 2 1
5 5 H 1.48497 * 109.47005 * 299.99394 * 3 2 1
6 6 H 1.48492 * 109.47408 * 59.99887 * 3 2 1
7 7 C 1.40054 * 120.00082 * 179.97438 * 2 1 3
8 8 H 1.08005 * 119.99790 * 173.70205 * 7 2 1
9 9 C 1.41266 * 120.00119 * 353.97166 * 7 2 1
10 10 C 1.40718 * 120.15922 * 185.85919 * 9 7 2
11 11 N 1.31905 * 119.93311 * 179.97438 * 10 9 7
12 12 C 1.32158 * 120.27160 * 359.97438 * 11 10 9
13 13 C 1.39921 * 120.31698 * 0.02562 * 12 11 10
14 14 N 1.38833 * 119.96617 * 180.02562 * 13 12 11
15 15 C 1.46499 * 120.00072 * 359.97438 * 14 13 12
16 16 C 1.53003 * 109.47193 * 180.02562 * 15 14 13
17 17 C 1.52998 * 109.46928 * 180.02562 * 16 15 14
18 18 C 1.53003 * 109.46928 * 180.02562 * 17 16 15
19 19 C 1.53007 * 109.47107 * 180.02562 * 18 17 16
20 20 C 1.52996 * 109.46857 * 180.02562 * 19 18 17
21 21 N 1.46499 * 109.46915 * 180.02562 * 20 19 18
22 22 C 1.34525 * 125.20424 * 269.69801 * 21 20 19
23 23 O 1.21396 * 125.79432 * 359.97438 * 22 21 20
24 24 C 1.47971 * 108.41115 * 179.85328 * 22 21 20
25 25 C 1.34326 * 106.78966 * 0.40577 * 24 22 21
26 26 C 1.34519 * 125.21107 * 90.00154 * 21 20 19
27 27 O 1.21398 * 125.79067 * 359.97438 * 26 21 20
28 28 N 1.32257 * 120.06730 * 359.73991 * 13 12 11
29 29 H 0.96995 * 120.00069 * 0.02562 * 1 2 3
30 30 H 1.08002 * 120.03830 * 359.95380 * 10 9 7
31 31 H 1.07993 * 119.84416 * 179.97438 * 12 11 10
32 32 H 0.97003 * 120.00086 * 179.97438 * 14 13 12
33 33 H 1.08997 * 109.47684 * 300.00777 * 15 14 13
34 34 H 1.09006 * 109.46788 * 60.00406 * 15 14 13
35 35 H 1.08998 * 109.46806 * 300.00169 * 16 15 14
36 36 H 1.09001 * 109.46847 * 60.00744 * 16 15 14
37 37 H 1.08997 * 109.47705 * 300.00383 * 17 16 15
38 38 H 1.09001 * 109.46860 * 60.00616 * 17 16 15
39 39 H 1.08996 * 109.47664 * 300.00339 * 18 17 16
40 40 H 1.09001 * 109.46847 * 60.00608 * 18 17 16
41 41 H 1.08996 * 109.47128 * 300.00658 * 19 18 17
42 42 H 1.09001 * 109.46778 * 60.00556 * 19 18 17
43 43 H 1.08996 * 109.47781 * 300.00248 * 20 19 18
44 44 H 1.09001 * 109.46979 * 60.00670 * 20 19 18
45 45 H 1.07995 * 126.60309 * 180.13635 * 24 22 21
46 46 H 1.08008 * 126.59763 * 179.80037 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3073 0.0000 0.0000
3 14 2.2412 1.6178 0.0000
4 1 3.7012 1.3465 0.0006
5 1 1.8825 2.3964 -1.2126
6 1 1.8825 2.3965 1.2124
7 6 2.0076 -1.2129 0.0005
8 1 3.0828 -1.2157 -0.1021
9 6 1.3072 -2.4329 0.1296
10 6 2.0132 -3.6437 0.2544
11 7 1.3547 -4.7802 0.3751
12 6 0.0332 -4.7871 0.3799
13 6 -0.6799 -3.5896 0.2565
14 7 -2.0681 -3.6053 0.2630
15 6 -2.7857 -4.8753 0.3984
16 6 -4.2931 -4.6143 0.3757
17 6 -5.0425 -5.9407 0.5178
18 6 -6.5499 -5.6798 0.4945
19 6 -7.2994 -7.0061 0.6372
20 6 -8.8067 -6.7452 0.6132
21 7 -9.5243 -8.0150 0.7505
22 6 -9.9120 -8.8010 -0.2701
23 8 -9.7269 -8.5770 -1.4488
24 6 -10.5996 -9.9864 0.2880
25 6 -10.5963 -9.8439 1.6236
26 6 -9.9014 -8.5707 1.9160
27 8 -9.7046 -8.1067 3.0204
28 7 -0.0328 -2.4421 0.1394
29 1 -0.4850 0.8400 -0.0004
30 1 3.0932 -3.6425 0.2510
31 1 -0.4990 -5.7216 0.4787
32 1 -2.5630 -2.7753 0.1779
33 1 -2.5188 -5.5335 -0.4283
34 1 -2.5126 -5.3481 1.3419
35 1 -4.5603 -3.9561 1.2024
36 1 -4.5659 -4.1419 -0.5679
37 1 -4.7753 -6.5994 -0.3085
38 1 -4.7697 -6.4128 1.4617
39 1 -6.8176 -5.0210 1.3205
40 1 -6.8224 -5.2079 -0.4496
41 1 -7.0318 -7.6653 -0.1886
42 1 -7.0268 -7.4775 1.5814
43 1 -9.0746 -6.0858 1.4387
44 1 -9.0789 -6.2740 -0.3312
45 1 -11.0263 -10.8059 -0.2712
46 1 -11.0189 -10.5274 2.3452
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001157331725.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:10:13
Heat of formation + Delta-G solvation = 4.071208 kcal
Electronic energy + Delta-G solvation = -27443.850920 eV
Core-core repulsion = 23334.377727 eV
Total energy + Delta-G solvation = -4109.473193 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.164 amu
Computer time = 3.11 seconds
Orbital eigenvalues (eV)
-42.72582 -39.13910 -38.88066 -37.15984 -36.63839 -35.61307 -34.04467 -33.73273
-31.93356 -31.02934 -29.13593 -27.19186 -25.87550 -25.80114 -24.24875 -22.49071
-22.16049 -21.79839 -21.15104 -20.77656 -20.34216 -17.98448 -17.44787 -17.03319
-16.78299 -16.44744 -16.10613 -15.71883 -15.29075 -14.88121 -14.87446 -14.84177
-14.69901 -14.50756 -14.48419 -13.96207 -13.65584 -13.52003 -13.11826 -12.85601
-12.77331 -12.02280 -11.91637 -11.62254 -11.46560 -11.36853 -11.32917 -11.14524
-11.13156 -10.94163 -10.84733 -10.78733 -10.68397 -10.65960 -10.32270 -10.17161
-9.82524 -9.59487 -9.35172 -8.31835 -7.36049 -6.67235 -6.42393 -4.63392
-0.52258 1.81759 1.98642 2.24309 2.72214 3.05616 3.10149 3.13729
3.21305 3.30700 3.57869 3.88919 4.01859 4.36420 4.41755 4.62066
4.64511 4.69636 4.74147 4.82141 4.90680 5.01112 5.02472 5.09902
5.15590 5.38943 5.51470 5.52553 5.64380 5.75466 5.82154 5.86583
5.96518 6.01906 6.11151 6.12757 6.27037 6.29911 6.37790 6.57175
6.60949 6.83608 7.06057 7.06372 7.16832 7.63839 7.99791 8.08770
8.48426 8.58907 8.89454 9.44886 10.03763 10.21319
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.022630 B = 0.001410 C = 0.001375
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1237.023630 B =19849.113827 C =20363.360421
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.710 5.710
2 C 0.068 3.932
3 Si 0.910 3.090
4 H -0.258 1.258
5 H -0.273 1.273
6 H -0.273 1.273
7 C -0.417 4.417
8 H 0.091 0.909
9 C 0.245 3.755
10 C -0.108 4.108
11 N -0.408 5.408
12 C -0.170 4.170
13 C 0.372 3.628
14 N -0.733 5.733
15 C 0.139 3.861
16 C -0.129 4.129
17 C -0.114 4.114
18 C -0.115 4.115
19 C -0.136 4.136
20 C 0.112 3.888
21 N -0.589 5.589
22 C 0.539 3.461
23 O -0.453 6.453
24 C -0.141 4.141
25 C -0.142 4.142
26 C 0.539 3.461
27 O -0.453 6.453
28 N -0.509 5.509
29 H 0.273 0.727
30 H 0.130 0.870
31 H 0.119 0.881
32 H 0.395 0.605
33 H 0.052 0.948
34 H 0.052 0.948
35 H 0.068 0.932
36 H 0.068 0.932
37 H 0.065 0.935
38 H 0.065 0.935
39 H 0.067 0.933
40 H 0.067 0.933
41 H 0.070 0.930
42 H 0.070 0.930
43 H 0.096 0.904
44 H 0.096 0.904
45 H 0.183 0.817
46 H 0.183 0.817
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.646 -14.729 1.619 28.758
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.331 5.331
2 C -0.158 4.158
3 Si 0.734 3.266
4 H -0.182 1.182
5 H -0.198 1.198
6 H -0.198 1.198
7 C -0.450 4.450
8 H 0.109 0.891
9 C 0.117 3.883
10 C -0.279 4.279
11 N -0.120 5.120
12 C -0.331 4.331
13 C 0.129 3.871
14 N -0.370 5.370
15 C 0.013 3.987
16 C -0.167 4.167
17 C -0.152 4.152
18 C -0.153 4.153
19 C -0.175 4.175
20 C -0.007 4.007
21 N -0.332 5.332
22 C 0.327 3.673
23 O -0.324 6.324
24 C -0.163 4.163
25 C -0.163 4.163
26 C 0.327 3.673
27 O -0.324 6.324
28 N -0.236 5.236
29 H 0.084 0.916
30 H 0.147 0.853
31 H 0.137 0.863
32 H 0.230 0.770
33 H 0.070 0.930
34 H 0.070 0.930
35 H 0.086 0.914
36 H 0.086 0.914
37 H 0.084 0.916
38 H 0.084 0.916
39 H 0.086 0.914
40 H 0.086 0.914
41 H 0.088 0.912
42 H 0.088 0.912
43 H 0.114 0.886
44 H 0.114 0.886
45 H 0.200 0.800
46 H 0.200 0.800
Dipole moment (debyes) X Y Z Total
from point charges -24.635 -14.364 1.595 28.561
hybrid contribution 0.086 1.013 -0.017 1.017
sum -24.548 -13.351 1.578 27.989
Atomic orbital electron populations
1.70124 1.07370 1.27835 1.27807 1.26134 0.94924 1.01313 0.93467
0.86225 0.80978 0.80837 0.78560 1.18153 1.19822 1.19785 1.19652
0.94928 0.89239 1.41172 0.89141 1.19108 0.87739 0.93240 0.88198
1.22911 0.98955 0.89338 1.16655 1.67501 1.08262 1.30208 1.05997
1.21913 0.90715 0.95828 1.24679 1.19527 0.85167 0.92005 0.90436
1.44127 1.02588 1.07801 1.82519 1.21106 0.90256 0.86821 1.00502
1.21754 0.94438 0.97788 1.02723 1.21471 0.93798 0.97441 1.02532
1.21497 0.95118 0.96063 1.02629 1.21968 0.92979 0.99380 1.03130
1.21838 0.92024 0.82191 1.04665 1.46795 1.53777 1.23612 1.09016
1.19461 0.78164 0.84266 0.85385 1.90829 1.51605 1.74381 1.15563
1.24675 0.97704 0.98088 0.95843 1.24673 0.97644 0.96245 0.97756
1.19456 0.78231 0.85789 0.83797 1.90830 1.51481 1.66545 1.23524
1.69042 1.08346 1.22348 1.23862 0.91600 0.85283 0.86314 0.76993
0.92967 0.92968 0.91375 0.91363 0.91597 0.91593 0.91398 0.91390
0.91168 0.91159 0.88588 0.88567 0.79975 0.79973
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.71 -18.54 11.51 55.55 0.64 -17.90 16
2 C 0.07 1.70 5.49 -17.34 -0.10 1.60 16
3 Si 0.91 18.23 29.57 -169.99 -5.03 13.21 16
4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16
5 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16
6 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16
7 C -0.42 -11.07 9.15 -37.75 -0.35 -11.41 16
8 H 0.09 2.22 7.86 -52.48 -0.41 1.80 16
9 C 0.25 6.87 6.54 -84.83 -0.55 6.32 16
10 C -0.11 -2.87 10.97 -16.58 -0.18 -3.06 16
11 N -0.41 -10.71 10.47 -12.11 -0.13 -10.83 16
12 C -0.17 -4.20 10.50 -16.78 -0.18 -4.37 16
13 C 0.37 9.27 7.66 -155.01 -1.19 8.08 16
14 N -0.73 -14.59 5.72 -60.28 -0.34 -14.94 16
15 C 0.14 2.10 4.90 -4.04 -0.02 2.08 16
16 C -0.13 -1.47 5.33 -26.73 -0.14 -1.61 16
17 C -0.11 -1.05 5.21 -26.73 -0.14 -1.19 16
18 C -0.11 -0.88 5.21 -26.73 -0.14 -1.02 16
19 C -0.14 -1.01 5.54 -26.73 -0.15 -1.16 16
20 C 0.11 0.78 5.82 -4.04 -0.02 0.75 16
21 N -0.59 -4.19 2.64 -117.53 -0.31 -4.50 16
22 C 0.54 3.76 8.04 -12.38 -0.10 3.66 16
23 O -0.45 -4.63 17.74 5.46 0.10 -4.54 16
24 C -0.14 -0.42 11.15 -36.98 -0.41 -0.83 16
25 C -0.14 -0.42 11.15 -36.98 -0.41 -0.83 16
26 C 0.54 3.77 8.04 -12.39 -0.10 3.67 16
27 O -0.45 -4.64 17.74 5.45 0.10 -4.54 16
28 N -0.51 -14.18 8.09 -10.14 -0.08 -14.26 16
29 H 0.27 6.41 8.29 -40.82 -0.34 6.07 16
30 H 0.13 3.11 8.06 -52.49 -0.42 2.69 16
31 H 0.12 2.61 6.70 -52.49 -0.35 2.26 16
32 H 0.40 7.72 8.60 -40.82 -0.35 7.37 16
33 H 0.05 0.80 7.93 -51.93 -0.41 0.39 16
34 H 0.05 0.80 7.93 -51.93 -0.41 0.39 16
35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16
38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16
42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16
43 H 0.10 0.62 8.01 -51.93 -0.42 0.21 16
44 H 0.10 0.63 8.01 -51.93 -0.42 0.21 16
45 H 0.18 -0.01 8.06 -52.49 -0.42 -0.43 16
46 H 0.18 0.00 8.06 -52.48 -0.42 -0.43 16
LS Contribution 398.16 15.07 6.00 6.00
Total: -1.00 -34.42 398.16 -9.79 -44.21
By element:
Atomic # 1 Polarization: 13.97 SS G_CDS: -6.56 Total: 7.41 kcal
Atomic # 6 Polarization: 4.86 SS G_CDS: -4.18 Total: 0.68 kcal
Atomic # 7 Polarization: -62.20 SS G_CDS: -0.23 Total: -62.43 kcal
Atomic # 8 Polarization: -9.27 SS G_CDS: 0.19 Total: -9.08 kcal
Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.21 kcal
Total LS contribution 6.00 Total: 6.00 kcal
Total: -34.42 -9.79 -44.21 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001157331725.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.284 kcal
(2) G-P(sol) polarization free energy of solvation -34.421 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.862 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.213 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.071 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 3.11 seconds