Wall clock time and date at job start Sat Apr 11 2020 07:10:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30730 * 1
3 3 Si 1.86804 * 119.99605 * 2 1
4 4 H 1.48500 * 109.46873 * 179.97438 * 3 2 1
5 5 H 1.48497 * 109.47005 * 299.99394 * 3 2 1
6 6 H 1.48492 * 109.47408 * 59.99887 * 3 2 1
7 7 C 1.40054 * 120.00082 * 179.97438 * 2 1 3
8 8 H 1.08005 * 119.99790 * 173.70205 * 7 2 1
9 9 C 1.41266 * 120.00119 * 353.97166 * 7 2 1
10 10 C 1.40718 * 120.15922 * 185.85919 * 9 7 2
11 11 N 1.31905 * 119.93311 * 179.97438 * 10 9 7
12 12 C 1.32158 * 120.27160 * 359.97438 * 11 10 9
13 13 C 1.39921 * 120.31698 * 0.02562 * 12 11 10
14 14 N 1.38833 * 119.96617 * 180.02562 * 13 12 11
15 15 C 1.46499 * 120.00072 * 359.97438 * 14 13 12
16 16 C 1.53003 * 109.47193 * 180.02562 * 15 14 13
17 17 C 1.52998 * 109.46928 * 180.02562 * 16 15 14
18 18 C 1.53003 * 109.46928 * 180.02562 * 17 16 15
19 19 C 1.53007 * 109.47107 * 180.02562 * 18 17 16
20 20 C 1.52996 * 109.46857 * 180.02562 * 19 18 17
21 21 N 1.46499 * 109.46915 * 180.02562 * 20 19 18
22 22 C 1.34525 * 125.20424 * 269.69801 * 21 20 19
23 23 O 1.21396 * 125.79432 * 359.97438 * 22 21 20
24 24 C 1.47971 * 108.41115 * 179.85328 * 22 21 20
25 25 C 1.34326 * 106.78966 * 0.40577 * 24 22 21
26 26 C 1.34519 * 125.21107 * 90.00154 * 21 20 19
27 27 O 1.21398 * 125.79067 * 359.97438 * 26 21 20
28 28 N 1.32257 * 120.06730 * 359.73991 * 13 12 11
29 29 H 0.96995 * 120.00069 * 0.02562 * 1 2 3
30 30 H 1.08002 * 120.03830 * 359.95380 * 10 9 7
31 31 H 1.07993 * 119.84416 * 179.97438 * 12 11 10
32 32 H 0.97003 * 120.00086 * 179.97438 * 14 13 12
33 33 H 1.08997 * 109.47684 * 300.00777 * 15 14 13
34 34 H 1.09006 * 109.46788 * 60.00406 * 15 14 13
35 35 H 1.08998 * 109.46806 * 300.00169 * 16 15 14
36 36 H 1.09001 * 109.46847 * 60.00744 * 16 15 14
37 37 H 1.08997 * 109.47705 * 300.00383 * 17 16 15
38 38 H 1.09001 * 109.46860 * 60.00616 * 17 16 15
39 39 H 1.08996 * 109.47664 * 300.00339 * 18 17 16
40 40 H 1.09001 * 109.46847 * 60.00608 * 18 17 16
41 41 H 1.08996 * 109.47128 * 300.00658 * 19 18 17
42 42 H 1.09001 * 109.46778 * 60.00556 * 19 18 17
43 43 H 1.08996 * 109.47781 * 300.00248 * 20 19 18
44 44 H 1.09001 * 109.46979 * 60.00670 * 20 19 18
45 45 H 1.07995 * 126.60309 * 180.13635 * 24 22 21
46 46 H 1.08008 * 126.59763 * 179.80037 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3073 0.0000 0.0000
3 14 2.2412 1.6178 0.0000
4 1 3.7012 1.3465 0.0006
5 1 1.8825 2.3964 -1.2126
6 1 1.8825 2.3965 1.2124
7 6 2.0076 -1.2129 0.0005
8 1 3.0828 -1.2157 -0.1021
9 6 1.3072 -2.4329 0.1296
10 6 2.0132 -3.6437 0.2544
11 7 1.3547 -4.7802 0.3751
12 6 0.0332 -4.7871 0.3799
13 6 -0.6799 -3.5896 0.2565
14 7 -2.0681 -3.6053 0.2630
15 6 -2.7857 -4.8753 0.3984
16 6 -4.2931 -4.6143 0.3757
17 6 -5.0425 -5.9407 0.5178
18 6 -6.5499 -5.6798 0.4945
19 6 -7.2994 -7.0061 0.6372
20 6 -8.8067 -6.7452 0.6132
21 7 -9.5243 -8.0150 0.7505
22 6 -9.9120 -8.8010 -0.2701
23 8 -9.7269 -8.5770 -1.4488
24 6 -10.5996 -9.9864 0.2880
25 6 -10.5963 -9.8439 1.6236
26 6 -9.9014 -8.5707 1.9160
27 8 -9.7046 -8.1067 3.0204
28 7 -0.0328 -2.4421 0.1394
29 1 -0.4850 0.8400 -0.0004
30 1 3.0932 -3.6425 0.2510
31 1 -0.4990 -5.7216 0.4787
32 1 -2.5630 -2.7753 0.1779
33 1 -2.5188 -5.5335 -0.4283
34 1 -2.5126 -5.3481 1.3419
35 1 -4.5603 -3.9561 1.2024
36 1 -4.5659 -4.1419 -0.5679
37 1 -4.7753 -6.5994 -0.3085
38 1 -4.7697 -6.4128 1.4617
39 1 -6.8176 -5.0210 1.3205
40 1 -6.8224 -5.2079 -0.4496
41 1 -7.0318 -7.6653 -0.1886
42 1 -7.0268 -7.4775 1.5814
43 1 -9.0746 -6.0858 1.4387
44 1 -9.0789 -6.2740 -0.3312
45 1 -11.0263 -10.8059 -0.2712
46 1 -11.0189 -10.5274 2.3452
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001157331725.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:10:12
Heat of formation + Delta-G solvation = -17.949346 kcal
Electronic energy + Delta-G solvation = -27444.805803 eV
Core-core repulsion = 23334.377727 eV
Total energy + Delta-G solvation = -4110.428076 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.164 amu
Computer time = 1.08 seconds
Orbital eigenvalues (eV)
-43.23526 -40.80340 -39.76746 -38.12826 -37.33931 -36.68430 -35.80453 -34.77369
-33.53017 -32.30366 -30.66420 -28.23916 -27.73534 -26.35164 -25.22874 -24.34116
-23.05044 -22.57250 -22.31306 -21.99023 -20.89169 -19.37795 -18.51172 -18.27964
-17.58486 -17.33188 -17.16309 -16.90021 -16.75160 -16.52988 -16.25422 -15.85911
-15.48470 -15.17049 -14.98416 -14.93488 -14.88757 -14.84987 -14.36400 -14.03058
-13.84102 -13.28607 -13.26490 -13.02644 -12.79549 -12.77679 -12.53855 -12.29559
-11.99527 -11.99267 -11.95366 -11.78803 -11.70337 -11.47988 -11.37744 -11.34162
-11.29486 -11.18859 -10.77029 -10.23031 -9.33437 -8.48549 -8.33788 -6.64768
-0.92645 0.83022 1.24665 1.33161 1.42202 1.54893 1.58822 1.61076
1.71256 2.21022 2.51807 2.82728 2.90126 3.17340 3.64689 3.78617
3.88929 3.97883 4.03979 4.06009 4.19815 4.29275 4.33607 4.35081
4.40393 4.45603 4.54918 4.58084 4.63943 4.69382 4.72940 4.85088
4.89142 4.89803 4.95481 4.99757 5.05316 5.15067 5.18279 5.24172
5.37536 5.42963 5.60137 5.71829 6.09769 6.10509 6.24008 6.51744
6.64581 6.70143 7.00496 7.45326 8.07431 8.34832
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.022630 B = 0.001410 C = 0.001375
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1237.023630 B =19849.113827 C =20363.360421
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.743 5.743
2 C 0.022 3.978
3 Si 0.994 3.006
4 H -0.250 1.250
5 H -0.265 1.265
6 H -0.267 1.267
7 C -0.441 4.441
8 H 0.101 0.899
9 C 0.214 3.786
10 C -0.134 4.134
11 N -0.417 5.417
12 C -0.178 4.178
13 C 0.363 3.637
14 N -0.724 5.724
15 C 0.134 3.866
16 C -0.117 4.117
17 C -0.109 4.109
18 C -0.110 4.110
19 C -0.127 4.127
20 C 0.109 3.891
21 N -0.597 5.597
22 C 0.532 3.468
23 O -0.492 6.492
24 C -0.125 4.125
25 C -0.125 4.125
26 C 0.532 3.468
27 O -0.492 6.492
28 N -0.540 5.540
29 H 0.282 0.718
30 H 0.143 0.857
31 H 0.145 0.855
32 H 0.396 0.604
33 H 0.054 0.946
34 H 0.054 0.946
35 H 0.070 0.930
36 H 0.071 0.929
37 H 0.067 0.933
38 H 0.067 0.933
39 H 0.072 0.928
40 H 0.072 0.928
41 H 0.062 0.938
42 H 0.062 0.938
43 H 0.098 0.902
44 H 0.098 0.902
45 H 0.219 0.781
46 H 0.219 0.781
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.068 -15.212 1.770 30.234
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.365 5.365
2 C -0.201 4.201
3 Si 0.814 3.186
4 H -0.173 1.173
5 H -0.190 1.190
6 H -0.192 1.192
7 C -0.473 4.473
8 H 0.119 0.881
9 C 0.086 3.914
10 C -0.303 4.303
11 N -0.129 5.129
12 C -0.340 4.340
13 C 0.118 3.882
14 N -0.360 5.360
15 C 0.010 3.990
16 C -0.155 4.155
17 C -0.147 4.147
18 C -0.148 4.148
19 C -0.165 4.165
20 C -0.011 4.011
21 N -0.340 5.340
22 C 0.323 3.677
23 O -0.365 6.365
24 C -0.146 4.146
25 C -0.146 4.146
26 C 0.323 3.677
27 O -0.365 6.365
28 N -0.268 5.268
29 H 0.093 0.907
30 H 0.160 0.840
31 H 0.162 0.838
32 H 0.231 0.769
33 H 0.072 0.928
34 H 0.072 0.928
35 H 0.089 0.911
36 H 0.089 0.911
37 H 0.085 0.915
38 H 0.085 0.915
39 H 0.091 0.909
40 H 0.091 0.909
41 H 0.081 0.919
42 H 0.081 0.919
43 H 0.116 0.884
44 H 0.116 0.884
45 H 0.236 0.764
46 H 0.236 0.764
Dipole moment (debyes) X Y Z Total
from point charges -26.085 -14.891 1.746 30.087
hybrid contribution 0.438 1.130 -0.067 1.214
sum -25.647 -13.761 1.679 29.154
Atomic orbital electron populations
1.70198 1.09119 1.29518 1.27617 1.27121 0.95794 1.04828 0.92351
0.84973 0.79591 0.75279 0.78778 1.17292 1.18976 1.19183 1.20086
0.95731 0.89913 1.41582 0.88055 1.19563 0.88423 0.94358 0.89022
1.23088 0.99690 0.89301 1.18260 1.67500 1.09058 1.30190 1.06117
1.22325 0.90547 0.96888 1.24288 1.19888 0.87086 0.91566 0.89694
1.44340 1.00942 1.09626 1.81043 1.21384 0.92179 0.84850 1.00552
1.21672 0.91762 0.99063 1.03022 1.21425 0.94492 0.96131 1.02682
1.21437 0.93953 0.96257 1.03131 1.21842 0.93338 0.99009 1.02340
1.21827 0.91770 0.82688 1.04847 1.46963 1.53684 1.23718 1.09608
1.20200 0.77557 0.85171 0.84784 1.90809 1.53248 1.75430 1.17038
1.24869 0.96979 0.97104 0.95605 1.24867 0.96905 0.94456 0.98341
1.20195 0.77636 0.86873 0.83006 1.90810 1.53129 1.67824 1.24771
1.69054 1.08631 1.23714 1.25434 0.90690 0.83978 0.83789 0.76878
0.92763 0.92795 0.91106 0.91070 0.91453 0.91469 0.90915 0.90891
0.91879 0.91887 0.88413 0.88387 0.76392 0.76391
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.74 -39.07 11.51 21.84 0.25 -38.82 16
2 C 0.02 1.12 5.49 85.30 0.47 1.58 16
3 Si 0.99 36.89 29.57 68.60 2.03 38.92 16
4 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16
5 H -0.27 -9.43 7.11 99.48 0.71 -8.73 16
6 H -0.27 -9.60 7.11 99.48 0.71 -8.90 16
7 C -0.44 -23.70 9.15 23.46 0.21 -23.49 16
8 H 0.10 5.00 7.86 -2.91 -0.02 4.98 16
9 C 0.21 12.29 6.54 40.16 0.26 12.55 16
10 C -0.13 -7.30 10.97 85.29 0.94 -6.36 16
11 N -0.42 -22.14 10.47 -192.23 -2.01 -24.15 16
12 C -0.18 -8.84 10.50 85.05 0.89 -7.95 16
13 C 0.36 18.30 7.66 133.36 1.02 19.32 16
14 N -0.72 -28.75 5.72 -344.63 -1.97 -30.72 16
15 C 0.13 3.96 4.90 86.38 0.42 4.38 16
16 C -0.12 -2.53 5.33 30.59 0.16 -2.37 16
17 C -0.11 -1.89 5.21 30.59 0.16 -1.73 16
18 C -0.11 -1.58 5.21 30.60 0.16 -1.42 16
19 C -0.13 -1.85 5.54 30.60 0.17 -1.68 16
20 C 0.11 1.50 5.82 86.38 0.50 2.00 16
21 N -0.60 -8.24 2.64 -762.73 -2.02 -10.26 16
22 C 0.53 6.96 8.04 86.86 0.70 7.65 16
23 O -0.49 -9.98 17.74 -3.39 -0.06 -10.04 16
24 C -0.12 -0.39 11.15 23.96 0.27 -0.12 16
25 C -0.12 -0.39 11.15 23.95 0.27 -0.13 16
26 C 0.53 6.96 8.04 86.86 0.70 7.66 16
27 O -0.49 -9.99 17.74 -3.40 -0.06 -10.05 16
28 N -0.54 -30.74 8.09 -186.01 -1.51 -32.25 16
29 H 0.28 13.24 8.29 -92.71 -0.77 12.47 16
30 H 0.14 7.03 8.06 -2.91 -0.02 7.01 16
31 H 0.14 6.22 6.70 -2.91 -0.02 6.20 16
32 H 0.40 15.51 8.60 -92.71 -0.80 14.72 16
33 H 0.05 1.60 7.93 -2.39 -0.02 1.58 16
34 H 0.05 1.60 7.93 -2.38 -0.02 1.58 16
35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16
36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16
37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16
38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16
39 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16
40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16
41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16
42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16
43 H 0.10 1.29 8.01 -2.39 -0.02 1.27 16
44 H 0.10 1.29 8.01 -2.39 -0.02 1.27 16
45 H 0.22 -0.91 8.06 -2.91 -0.02 -0.94 16
46 H 0.22 -0.91 8.06 -2.91 -0.02 -0.94 16
Total: -1.00 -76.97 398.16 2.17 -74.80
By element:
Atomic # 1 Polarization: 32.44 SS G_CDS: 0.21 Total: 32.65 kcal
Atomic # 6 Polarization: 2.61 SS G_CDS: 7.30 Total: 9.91 kcal
Atomic # 7 Polarization: -128.94 SS G_CDS: -7.25 Total: -136.20 kcal
Atomic # 8 Polarization: -19.96 SS G_CDS: -0.12 Total: -20.08 kcal
Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.92 kcal
Total: -76.97 2.17 -74.80 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001157331725.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.849 kcal
(2) G-P(sol) polarization free energy of solvation -76.967 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.118 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.798 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.949 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds