Wall clock time and date at job start Sat Apr 11 2020 07:12:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31612 * 1
3 3 Si 1.86803 * 119.99991 * 2 1
4 4 H 1.48494 * 109.47255 * 179.97438 * 3 2 1
5 5 H 1.48504 * 109.47191 * 300.00126 * 3 2 1
6 6 H 1.48502 * 109.46888 * 59.99477 * 3 2 1
7 7 C 1.38812 * 120.00284 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00271 * 180.02562 * 7 2 1
9 9 N 1.36942 * 119.99698 * 0.02562 * 7 2 1
10 10 C 1.46500 * 119.99710 * 180.02562 * 9 7 2
11 11 C 1.52997 * 109.52401 * 59.91727 * 10 9 7
12 12 O 1.42902 * 109.47090 * 305.07806 * 11 10 9
13 13 C 1.53040 * 109.49710 * 179.97438 * 10 9 7
14 14 C 1.53049 * 109.53465 * 58.58478 * 13 10 9
15 15 C 1.53190 * 109.33655 * 61.35063 * 14 13 10
16 16 N 1.46930 * 108.77525 * 305.41125 * 15 14 13
17 17 C 1.34770 * 120.60685 * 233.53872 * 16 15 14
18 18 O 1.21617 * 120.00144 * 174.17583 * 17 16 15
19 19 C 1.47384 * 119.99961 * 354.17620 * 17 16 15
20 20 C 1.39250 * 120.83298 * 306.33666 * 19 17 16
21 21 N 1.31917 * 120.96768 * 179.67854 * 20 19 17
22 22 C 1.31929 * 122.71398 * 0.64569 * 21 20 19
23 23 C 1.38692 * 120.79607 * 359.64765 * 22 21 20
24 24 N 1.37752 * 134.30303 * 180.02562 * 23 22 21
25 25 H 0.96998 * 125.55822 * 359.97438 * 24 23 22
26 26 C 1.36560 * 108.87746 * 180.02562 * 24 23 22
27 27 C 1.34642 * 109.66176 * 0.02562 * 26 24 23
28 28 C 1.40983 * 118.84002 * 0.02671 * 23 22 21
29 29 C 1.46924 * 118.76327 * 53.55321 * 16 15 14
30 30 H 0.97001 * 120.00251 * 0.02562 * 1 2 3
31 31 H 0.96996 * 119.99784 * 359.97438 * 9 7 2
32 32 H 1.08995 * 109.47334 * 65.07873 * 11 10 9
33 33 H 1.09006 * 109.47204 * 185.08447 * 11 10 9
34 34 H 0.96707 * 114.00070 * 180.02562 * 12 11 10
35 35 H 1.08996 * 109.46286 * 298.56801 * 13 10 9
36 36 H 1.09002 * 109.45194 * 178.59584 * 13 10 9
37 37 H 1.09002 * 109.49448 * 181.31477 * 14 13 10
38 38 H 1.09000 * 109.49626 * 301.37910 * 14 13 10
39 39 H 1.09000 * 109.59251 * 65.16813 * 15 14 13
40 40 H 1.09003 * 109.58278 * 185.59266 * 15 14 13
41 41 H 1.07997 * 119.51850 * 359.97438 * 20 19 17
42 42 H 1.07997 * 119.59487 * 179.67372 * 22 21 20
43 43 H 1.08005 * 125.16749 * 179.97438 * 26 24 23
44 44 H 1.08000 * 126.09224 * 180.02562 * 27 26 24
45 45 H 1.09001 * 109.58740 * 186.62363 * 29 16 15
46 46 H 1.09005 * 109.58453 * 66.20817 * 29 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.7101 1.3465 0.0006
5 1 1.8914 2.3965 -1.2125
6 1 1.8912 2.3965 1.2125
7 6 2.0102 -1.2021 0.0005
8 1 3.0902 -1.2021 0.0010
9 7 1.3255 -2.3881 0.0005
10 6 2.0581 -3.6567 0.0017
11 6 2.9388 -3.7376 1.2502
12 8 3.7868 -2.5890 1.3100
13 6 1.0642 -4.8205 0.0021
14 6 0.1606 -4.7222 -1.2293
15 6 1.0170 -4.8181 -2.4958
16 7 2.0682 -3.7934 -2.4347
17 6 2.2329 -2.9181 -3.4461
18 8 3.0341 -2.0094 -3.3396
19 6 1.4421 -3.0622 -4.6815
20 6 1.4267 -4.2651 -5.3828
21 7 0.7148 -4.3989 -6.4853
22 6 -0.0053 -3.4168 -6.9927
23 6 -0.0522 -2.1770 -6.3728
24 7 -0.6916 -0.9880 -6.6465
25 1 -1.2733 -0.8219 -7.4046
26 6 -0.3719 -0.0810 -5.6769
27 6 0.4580 -0.6487 -4.7815
28 6 0.6851 -1.9813 -5.1871
29 6 2.9364 -3.7411 -1.2506
30 1 -0.4850 0.8400 -0.0004
31 1 0.3556 -2.3880 0.0005
32 1 2.3078 -3.7700 2.1384
33 1 3.5504 -4.6388 1.2057
34 1 4.3746 -2.5735 2.0778
35 1 0.4543 -4.7769 0.9044
36 1 1.6097 -5.7638 -0.0223
37 1 -0.5622 -5.5380 -1.2162
38 1 -0.3670 -3.7684 -1.2182
39 1 1.4735 -5.8062 -2.5544
40 1 0.3922 -4.6495 -3.3730
41 1 2.0022 -5.1022 -5.0162
42 1 -0.5652 -3.5804 -7.9016
43 1 -0.7298 0.9372 -5.6352
44 1 0.8746 -0.1700 -3.9075
45 1 3.5783 -2.8618 -1.3067
46 1 3.5495 -4.6413 -1.2070
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001484845051.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:12:03
Heat of formation + Delta-G solvation = 21.714888 kcal
Electronic energy + Delta-G solvation = -32058.385461 eV
Core-core repulsion = 27949.677355 eV
Total energy + Delta-G solvation = -4108.708106 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.164 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.67691 -39.73757 -38.06987 -37.36763 -35.65637 -33.75311 -32.53712 -32.05884
-30.98191 -29.95005 -29.59243 -28.47291 -25.70790 -25.25177 -23.66204 -23.40141
-22.52186 -21.60041 -20.94750 -19.77288 -18.49198 -17.81099 -17.35435 -16.99171
-16.42544 -16.12400 -15.62410 -15.26920 -14.90364 -14.70424 -14.59404 -14.21556
-14.13576 -13.77510 -13.33249 -13.20268 -13.15245 -12.89226 -12.67041 -12.62828
-12.29470 -12.15664 -12.02929 -11.73324 -11.55610 -11.14438 -10.74022 -10.68218
-10.55044 -10.39389 -10.12595 -10.05450 -9.88945 -9.64045 -9.43638 -9.03210
-8.92147 -8.73551 -8.55687 -7.97597 -7.77559 -6.73458 -5.49661 -2.74467
0.76206 1.50680 2.86491 2.99322 3.25747 3.55419 3.60731 3.66704
3.73037 4.04590 4.47617 4.70143 4.80612 4.85151 4.88161 4.98396
5.16102 5.20939 5.27337 5.35268 5.42940 5.50133 5.53902 5.67936
5.78069 5.82029 5.85079 5.92630 5.96298 6.02671 6.10078 6.14612
6.26049 6.32837 6.33589 6.44173 6.56579 6.66556 6.77194 6.85632
6.95413 6.97661 7.18979 7.41399 7.98941 8.03384 8.24234 8.43110
8.67883 8.81515 9.81616 10.29136 10.65086 11.73959
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.010549 B = 0.005350 C = 0.004051
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2653.663760 B = 5232.405745 C = 6910.845465
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.946 5.946
2 C -0.025 4.025
3 Si 0.899 3.101
4 H -0.281 1.281
5 H -0.298 1.298
6 H -0.300 1.300
7 C -0.187 4.187
8 H 0.092 0.908
9 N -0.701 5.701
10 C 0.188 3.812
11 C 0.075 3.925
12 O -0.535 6.535
13 C -0.115 4.115
14 C -0.131 4.131
15 C 0.109 3.891
16 N -0.587 5.587
17 C 0.568 3.432
18 O -0.515 6.515
19 C -0.114 4.114
20 C 0.081 3.919
21 N -0.472 5.472
22 C 0.119 3.881
23 C 0.025 3.975
24 N -0.580 5.580
25 H 0.419 0.581
26 C 0.062 3.938
27 C -0.179 4.179
28 C -0.028 4.028
29 C 0.110 3.890
30 H 0.246 0.754
31 H 0.381 0.619
32 H 0.037 0.963
33 H 0.023 0.977
34 H 0.351 0.649
35 H 0.066 0.934
36 H 0.061 0.939
37 H 0.066 0.934
38 H 0.080 0.920
39 H 0.062 0.938
40 H 0.078 0.922
41 H 0.157 0.843
42 H 0.153 0.847
43 H 0.177 0.823
44 H 0.158 0.842
45 H 0.104 0.896
46 H 0.046 0.954
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.959 -10.668 -9.829 14.638
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.598 5.598
2 C -0.218 4.218
3 Si 0.732 3.268
4 H -0.206 1.206
5 H -0.226 1.226
6 H -0.228 1.228
7 C -0.318 4.318
8 H 0.110 0.890
9 N -0.341 5.341
10 C 0.094 3.906
11 C -0.006 4.006
12 O -0.338 6.338
13 C -0.153 4.153
14 C -0.169 4.169
15 C -0.014 4.014
16 N -0.319 5.319
17 C 0.354 3.646
18 O -0.390 6.390
19 C -0.120 4.120
20 C -0.071 4.071
21 N -0.180 5.180
22 C -0.047 4.047
23 C -0.085 4.085
24 N -0.183 5.183
25 H 0.256 0.744
26 C -0.067 4.067
27 C -0.203 4.203
28 C -0.040 4.040
29 C -0.014 4.014
30 H 0.056 0.944
31 H 0.216 0.784
32 H 0.056 0.944
33 H 0.041 0.959
34 H 0.195 0.805
35 H 0.084 0.916
36 H 0.080 0.920
37 H 0.085 0.915
38 H 0.099 0.901
39 H 0.080 0.920
40 H 0.096 0.904
41 H 0.174 0.826
42 H 0.170 0.830
43 H 0.195 0.805
44 H 0.176 0.824
45 H 0.122 0.878
46 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -1.729 -10.672 -10.799 15.281
hybrid contribution -0.049 1.770 0.787 1.938
sum -1.779 -8.902 -10.012 13.515
Atomic orbital electron populations
1.69674 1.04887 1.24609 1.60631 1.24609 0.95291 0.97209 1.04666
0.86176 0.79264 0.84892 0.76428 1.20623 1.22581 1.22823 1.19565
0.91886 0.82970 1.37409 0.89039 1.42413 1.05177 0.99242 1.87273
1.19950 0.90946 0.88179 0.91488 1.22747 0.92091 0.86725 0.99048
1.86981 1.54691 1.43722 1.48387 1.21626 0.97751 0.97545 0.98354
1.21853 0.97810 1.03120 0.94155 1.21732 0.89756 0.90895 0.99051
1.47649 1.33726 1.32089 1.18423 1.17790 0.82717 0.81520 0.82533
1.90816 1.36850 1.30668 1.80703 1.20495 0.99640 0.94078 0.97790
1.22472 0.97679 0.95282 0.91670 1.67522 1.07453 1.30742 1.12323
1.21734 0.97945 0.85871 0.99160 1.19306 1.00578 0.89853 0.98782
1.41713 1.42643 1.09193 1.24774 0.74352 1.22125 0.99441 0.95521
0.89625 1.20952 1.03393 0.93366 1.02620 1.18178 0.97067 0.94516
0.94266 1.22155 0.92763 1.01868 0.84659 0.94406 0.78412 0.94428
0.95865 0.80478 0.91563 0.91985 0.91524 0.90134 0.91967 0.90352
0.82572 0.83023 0.80541 0.82390 0.87818 0.93553
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -28.89 13.06 55.49 0.72 -28.17 16
2 C -0.02 -0.73 5.50 -17.43 -0.10 -0.83 16
3 Si 0.90 24.16 29.55 -169.99 -5.02 19.14 16
4 H -0.28 -7.53 7.11 56.52 0.40 -7.13 16
5 H -0.30 -8.07 7.11 56.52 0.40 -7.67 16
6 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16
7 C -0.19 -5.22 8.06 -15.06 -0.12 -5.34 16
8 H 0.09 2.66 5.26 -52.49 -0.28 2.38 16
9 N -0.70 -16.98 4.75 -47.12 -0.22 -17.20 16
10 C 0.19 3.56 0.68 -131.70 -0.09 3.47 16
11 C 0.08 1.30 6.09 37.16 0.23 1.53 16
12 O -0.54 -10.40 10.05 -35.23 -0.35 -10.76 16
13 C -0.11 -1.73 4.76 -26.69 -0.13 -1.86 16
14 C -0.13 -1.95 5.91 -26.61 -0.16 -2.11 16
15 C 0.11 1.59 5.57 -3.71 -0.02 1.57 16
16 N -0.59 -10.76 2.89 -174.05 -0.50 -11.26 16
17 C 0.57 11.77 7.13 -12.54 -0.09 11.69 16
18 O -0.52 -12.87 16.50 5.26 0.09 -12.79 16
19 C -0.11 -2.05 4.64 -104.63 -0.49 -2.53 16
20 C 0.08 1.21 8.95 -17.14 -0.15 1.05 16
21 N -0.47 -6.69 10.30 -12.85 -0.13 -6.82 16
22 C 0.12 1.50 11.21 -17.34 -0.19 1.30 16
23 C 0.03 0.35 7.31 -84.00 -0.61 -0.26 16
24 N -0.58 -6.40 6.13 -10.63 -0.07 -6.46 16
25 H 0.42 2.82 8.96 -40.82 -0.37 2.45 16
26 C 0.06 0.82 11.83 -16.72 -0.20 0.62 16
27 C -0.18 -3.25 10.73 -39.76 -0.43 -3.68 16
28 C -0.03 -0.51 6.06 -106.59 -0.65 -1.15 16
29 C 0.11 2.11 4.93 -3.71 -0.02 2.09 16
30 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16
31 H 0.38 9.96 6.42 -40.82 -0.26 9.70 16
32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16
33 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16
34 H 0.35 5.04 9.12 45.56 0.42 5.46 16
35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
38 H 0.08 1.50 6.75 -51.93 -0.35 1.15 16
39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
40 H 0.08 1.14 5.39 -51.93 -0.28 0.86 16
41 H 0.16 2.01 7.74 -52.49 -0.41 1.61 16
42 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16
43 H 0.18 1.72 8.06 -52.48 -0.42 1.29 16
44 H 0.16 3.43 8.06 -52.49 -0.42 3.01 16
45 H 0.10 2.43 5.82 -51.93 -0.30 2.13 16
46 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16
LS Contribution 368.89 15.07 5.56 5.56
Total: -1.00 -37.25 368.89 -8.33 -45.59
By element:
Atomic # 1 Polarization: 22.82 SS G_CDS: -5.19 Total: 17.63 kcal
Atomic # 6 Polarization: 8.76 SS G_CDS: -3.21 Total: 5.55 kcal
Atomic # 7 Polarization: -69.72 SS G_CDS: -0.20 Total: -69.92 kcal
Atomic # 8 Polarization: -23.28 SS G_CDS: -0.27 Total: -23.55 kcal
Atomic # 14 Polarization: 24.16 SS G_CDS: -5.02 Total: 19.14 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -37.25 -8.33 -45.59 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001484845051.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.302 kcal
(2) G-P(sol) polarization free energy of solvation -37.253 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.048 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.587 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.715 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds