Wall clock time and date at job start Sat Apr 11 2020 07:12:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31612 * 1
3 3 Si 1.86803 * 119.99991 * 2 1
4 4 H 1.48494 * 109.47255 * 179.97438 * 3 2 1
5 5 H 1.48504 * 109.47191 * 300.00126 * 3 2 1
6 6 H 1.48502 * 109.46888 * 59.99477 * 3 2 1
7 7 C 1.38812 * 120.00284 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00271 * 180.02562 * 7 2 1
9 9 N 1.36942 * 119.99698 * 0.02562 * 7 2 1
10 10 C 1.46500 * 119.99710 * 180.02562 * 9 7 2
11 11 C 1.52997 * 109.52401 * 59.91727 * 10 9 7
12 12 O 1.42902 * 109.47090 * 305.07806 * 11 10 9
13 13 C 1.53040 * 109.49710 * 179.97438 * 10 9 7
14 14 C 1.53049 * 109.53465 * 58.58478 * 13 10 9
15 15 C 1.53190 * 109.33655 * 61.35063 * 14 13 10
16 16 N 1.46930 * 108.77525 * 305.41125 * 15 14 13
17 17 C 1.34770 * 120.60685 * 233.53872 * 16 15 14
18 18 O 1.21617 * 120.00144 * 174.17583 * 17 16 15
19 19 C 1.47384 * 119.99961 * 354.17620 * 17 16 15
20 20 C 1.39250 * 120.83298 * 306.33666 * 19 17 16
21 21 N 1.31917 * 120.96768 * 179.67854 * 20 19 17
22 22 C 1.31929 * 122.71398 * 0.64569 * 21 20 19
23 23 C 1.38692 * 120.79607 * 359.64765 * 22 21 20
24 24 N 1.37752 * 134.30303 * 180.02562 * 23 22 21
25 25 H 0.96998 * 125.55822 * 359.97438 * 24 23 22
26 26 C 1.36560 * 108.87746 * 180.02562 * 24 23 22
27 27 C 1.34642 * 109.66176 * 0.02562 * 26 24 23
28 28 C 1.40983 * 118.84002 * 0.02671 * 23 22 21
29 29 C 1.46924 * 118.76327 * 53.55321 * 16 15 14
30 30 H 0.97001 * 120.00251 * 0.02562 * 1 2 3
31 31 H 0.96996 * 119.99784 * 359.97438 * 9 7 2
32 32 H 1.08995 * 109.47334 * 65.07873 * 11 10 9
33 33 H 1.09006 * 109.47204 * 185.08447 * 11 10 9
34 34 H 0.96707 * 114.00070 * 180.02562 * 12 11 10
35 35 H 1.08996 * 109.46286 * 298.56801 * 13 10 9
36 36 H 1.09002 * 109.45194 * 178.59584 * 13 10 9
37 37 H 1.09002 * 109.49448 * 181.31477 * 14 13 10
38 38 H 1.09000 * 109.49626 * 301.37910 * 14 13 10
39 39 H 1.09000 * 109.59251 * 65.16813 * 15 14 13
40 40 H 1.09003 * 109.58278 * 185.59266 * 15 14 13
41 41 H 1.07997 * 119.51850 * 359.97438 * 20 19 17
42 42 H 1.07997 * 119.59487 * 179.67372 * 22 21 20
43 43 H 1.08005 * 125.16749 * 179.97438 * 26 24 23
44 44 H 1.08000 * 126.09224 * 180.02562 * 27 26 24
45 45 H 1.09001 * 109.58740 * 186.62363 * 29 16 15
46 46 H 1.09005 * 109.58453 * 66.20817 * 29 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.7101 1.3465 0.0006
5 1 1.8914 2.3965 -1.2125
6 1 1.8912 2.3965 1.2125
7 6 2.0102 -1.2021 0.0005
8 1 3.0902 -1.2021 0.0010
9 7 1.3255 -2.3881 0.0005
10 6 2.0581 -3.6567 0.0017
11 6 2.9388 -3.7376 1.2502
12 8 3.7868 -2.5890 1.3100
13 6 1.0642 -4.8205 0.0021
14 6 0.1606 -4.7222 -1.2293
15 6 1.0170 -4.8181 -2.4958
16 7 2.0682 -3.7934 -2.4347
17 6 2.2329 -2.9181 -3.4461
18 8 3.0341 -2.0094 -3.3396
19 6 1.4421 -3.0622 -4.6815
20 6 1.4267 -4.2651 -5.3828
21 7 0.7148 -4.3989 -6.4853
22 6 -0.0053 -3.4168 -6.9927
23 6 -0.0522 -2.1770 -6.3728
24 7 -0.6916 -0.9880 -6.6465
25 1 -1.2733 -0.8219 -7.4046
26 6 -0.3719 -0.0810 -5.6769
27 6 0.4580 -0.6487 -4.7815
28 6 0.6851 -1.9813 -5.1871
29 6 2.9364 -3.7411 -1.2506
30 1 -0.4850 0.8400 -0.0004
31 1 0.3556 -2.3880 0.0005
32 1 2.3078 -3.7700 2.1384
33 1 3.5504 -4.6388 1.2057
34 1 4.3746 -2.5735 2.0778
35 1 0.4543 -4.7769 0.9044
36 1 1.6097 -5.7638 -0.0223
37 1 -0.5622 -5.5380 -1.2162
38 1 -0.3670 -3.7684 -1.2182
39 1 1.4735 -5.8062 -2.5544
40 1 0.3922 -4.6495 -3.3730
41 1 2.0022 -5.1022 -5.0162
42 1 -0.5652 -3.5804 -7.9016
43 1 -0.7298 0.9372 -5.6352
44 1 0.8746 -0.1700 -3.9075
45 1 3.5783 -2.8618 -1.3067
46 1 3.5495 -4.6413 -1.2070
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001484845051.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:12:02
Heat of formation + Delta-G solvation = -9.458618 kcal
Electronic energy + Delta-G solvation = -32059.737245 eV
Core-core repulsion = 27949.677355 eV
Total energy + Delta-G solvation = -4110.059890 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.164 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-42.81917 -41.17424 -39.38268 -38.75093 -37.12331 -35.52901 -34.09898 -33.44696
-32.53055 -31.10708 -30.86332 -30.25684 -27.11940 -26.56376 -25.54556 -24.84250
-23.64960 -22.92803 -22.19447 -21.09669 -19.94105 -19.31563 -18.92493 -18.36073
-17.76387 -17.61678 -17.13252 -16.58658 -16.39193 -15.98936 -15.83340 -15.68069
-15.62102 -15.47957 -14.95535 -14.68163 -14.50200 -14.29090 -14.15818 -13.84554
-13.61483 -13.54051 -13.41810 -13.19525 -12.94505 -12.92273 -12.70446 -12.57621
-12.04257 -11.93055 -11.78332 -11.42382 -11.32781 -11.27938 -11.11772 -10.82994
-10.54238 -10.41437 -9.65476 -9.50889 -8.96268 -8.75931 -7.76961 -4.96987
-0.39799 0.37620 1.38059 1.41412 1.51045 1.59236 1.75938 2.04589
2.21263 2.65721 2.84462 3.36218 3.44280 3.59215 3.71193 3.77978
3.86684 3.92112 3.97501 4.05595 4.13164 4.17339 4.23246 4.33545
4.41610 4.54678 4.61992 4.65881 4.71027 4.76677 4.79553 4.85148
4.94007 5.02493 5.05375 5.12633 5.20521 5.41352 5.44239 5.49661
5.51272 5.75134 5.80275 5.96286 6.47422 6.55173 6.57187 6.90594
7.19235 7.31499 7.56284 8.24843 8.47315 9.47716
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.010549 B = 0.005350 C = 0.004051
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2653.663760 B = 5232.405745 C = 6910.845465
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.976 5.976
2 C -0.089 4.089
3 Si 0.941 3.059
4 H -0.283 1.283
5 H -0.307 1.307
6 H -0.296 1.296
7 C -0.155 4.155
8 H 0.079 0.921
9 N -0.708 5.708
10 C 0.173 3.827
11 C 0.075 3.925
12 O -0.572 6.572
13 C -0.107 4.107
14 C -0.127 4.127
15 C 0.106 3.894
16 N -0.585 5.585
17 C 0.559 3.441
18 O -0.582 6.582
19 C -0.154 4.154
20 C 0.101 3.899
21 N -0.480 5.480
22 C 0.145 3.855
23 C 0.021 3.979
24 N -0.549 5.549
25 H 0.446 0.554
26 C 0.105 3.895
27 C -0.249 4.249
28 C -0.061 4.061
29 C 0.113 3.887
30 H 0.238 0.762
31 H 0.369 0.631
32 H 0.038 0.962
33 H 0.068 0.932
34 H 0.373 0.627
35 H 0.067 0.933
36 H 0.106 0.894
37 H 0.106 0.894
38 H 0.032 0.968
39 H 0.108 0.892
40 H 0.078 0.922
41 H 0.177 0.823
42 H 0.203 0.797
43 H 0.215 0.785
44 H 0.100 0.900
45 H 0.051 0.949
46 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.158 -14.235 -11.877 18.806
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.631 5.631
2 C -0.279 4.279
3 Si 0.776 3.224
4 H -0.209 1.209
5 H -0.236 1.236
6 H -0.224 1.224
7 C -0.288 4.288
8 H 0.097 0.903
9 N -0.347 5.347
10 C 0.082 3.918
11 C -0.005 4.005
12 O -0.377 6.377
13 C -0.145 4.145
14 C -0.165 4.165
15 C -0.015 4.015
16 N -0.316 5.316
17 C 0.348 3.652
18 O -0.462 6.462
19 C -0.160 4.160
20 C -0.050 4.050
21 N -0.189 5.189
22 C -0.021 4.021
23 C -0.089 4.089
24 N -0.154 5.154
25 H 0.289 0.711
26 C -0.027 4.027
27 C -0.274 4.274
28 C -0.072 4.072
29 C -0.012 4.012
30 H 0.047 0.953
31 H 0.202 0.798
32 H 0.056 0.944
33 H 0.086 0.914
34 H 0.220 0.780
35 H 0.086 0.914
36 H 0.125 0.875
37 H 0.125 0.875
38 H 0.051 0.949
39 H 0.126 0.874
40 H 0.096 0.904
41 H 0.194 0.806
42 H 0.220 0.780
43 H 0.232 0.768
44 H 0.119 0.881
45 H 0.070 0.930
46 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -2.922 -14.334 -12.849 19.471
hybrid contribution 0.352 2.779 1.350 3.109
sum -2.571 -11.555 -11.500 16.504
Atomic orbital electron populations
1.69774 1.05579 1.24182 1.63598 1.25113 0.96032 0.99471 1.07263
0.85461 0.78150 0.82845 0.75962 1.20888 1.23612 1.22405 1.19620
0.91365 0.84443 1.33394 0.90323 1.42521 1.04708 1.00383 1.87050
1.20456 0.91986 0.87302 0.92052 1.22718 0.92338 0.87709 0.97716
1.86884 1.55599 1.45264 1.49992 1.21635 0.97073 0.97348 0.98441
1.21828 0.98297 1.02101 0.94305 1.22042 0.89001 0.91522 0.98959
1.47820 1.34097 1.32270 1.17389 1.18408 0.82094 0.80783 0.83953
1.90757 1.39740 1.33404 1.82278 1.20379 1.01830 0.95934 0.97834
1.22686 0.96794 0.94385 0.91163 1.67688 1.08083 1.31133 1.11968
1.22545 0.95879 0.84287 0.99393 1.19409 1.00572 0.91305 0.97662
1.41623 1.41550 1.07622 1.24572 0.71130 1.22449 0.95942 0.96587
0.87707 1.20659 1.07930 0.95172 1.03626 1.18488 0.98288 0.94257
0.96183 1.22034 0.92766 1.01288 0.85083 0.95303 0.79827 0.94395
0.91413 0.77976 0.91409 0.87548 0.87530 0.94898 0.87446 0.90394
0.80636 0.78007 0.76834 0.88143 0.93043 0.89610
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.98 -63.25 13.06 21.65 0.28 -62.97 16
2 C -0.09 -5.60 5.50 84.86 0.47 -5.13 16
3 Si 0.94 52.86 29.55 68.60 2.03 54.89 16
4 H -0.28 -15.76 7.11 99.48 0.71 -15.05 16
5 H -0.31 -17.50 7.11 99.48 0.71 -16.79 16
6 H -0.30 -16.20 7.11 99.48 0.71 -15.49 16
7 C -0.16 -9.17 8.06 84.03 0.68 -8.50 16
8 H 0.08 4.85 5.26 -2.91 -0.02 4.84 16
9 N -0.71 -35.75 4.75 -303.00 -1.44 -37.19 16
10 C 0.17 6.47 0.68 3.68 0.00 6.47 16
11 C 0.08 2.50 6.09 71.98 0.44 2.93 16
12 O -0.57 -22.36 10.05 -148.98 -1.50 -23.86 16
13 C -0.11 -2.93 4.76 30.62 0.15 -2.79 16
14 C -0.13 -3.54 5.91 30.67 0.18 -3.36 16
15 C 0.11 2.88 5.57 86.36 0.48 3.36 16
16 N -0.59 -21.75 2.89 -822.82 -2.38 -24.12 16
17 C 0.56 24.72 7.13 86.65 0.62 25.34 16
18 O -0.58 -32.05 16.50 -4.08 -0.07 -32.12 16
19 C -0.15 -5.71 4.64 -19.87 -0.09 -5.80 16
20 C 0.10 2.87 8.95 84.92 0.76 3.63 16
21 N -0.48 -12.10 10.30 -194.56 -2.00 -14.10 16
22 C 0.15 3.07 11.21 84.79 0.95 4.03 16
23 C 0.02 0.55 7.31 38.99 0.29 0.84 16
24 N -0.55 -10.59 6.13 -187.55 -1.15 -11.74 16
25 H 0.45 3.97 8.96 -92.71 -0.83 3.14 16
26 C 0.11 2.73 11.83 83.13 0.98 3.71 16
27 C -0.25 -9.86 10.73 22.16 0.24 -9.62 16
28 C -0.06 -2.24 6.06 -21.14 -0.13 -2.37 16
29 C 0.11 4.33 4.93 86.36 0.43 4.76 16
30 H 0.24 15.21 8.31 -92.71 -0.77 14.44 16
31 H 0.37 20.28 6.42 -92.71 -0.60 19.69 16
32 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16
33 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16
34 H 0.37 10.60 9.12 -74.05 -0.68 9.92 16
35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16
36 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16
37 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16
38 H 0.03 1.24 6.75 -2.39 -0.02 1.22 16
39 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16
40 H 0.08 2.15 5.39 -2.39 -0.01 2.14 16
41 H 0.18 4.11 7.74 -2.91 -0.02 4.09 16
42 H 0.20 2.22 8.06 -2.91 -0.02 2.19 16
43 H 0.22 3.78 8.06 -2.91 -0.02 3.76 16
44 H 0.10 5.09 8.06 -2.91 -0.02 5.06 16
45 H 0.05 2.55 5.82 -2.39 -0.01 2.53 16
46 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16
Total: -1.00 -93.76 368.89 -0.83 -94.58
By element:
Atomic # 1 Polarization: 40.17 SS G_CDS: -1.04 Total: 39.13 kcal
Atomic # 6 Polarization: 11.07 SS G_CDS: 6.44 Total: 17.50 kcal
Atomic # 7 Polarization: -143.44 SS G_CDS: -6.69 Total: -150.13 kcal
Atomic # 8 Polarization: -54.41 SS G_CDS: -1.56 Total: -55.98 kcal
Atomic # 14 Polarization: 52.86 SS G_CDS: 2.03 Total: 54.89 kcal
Total: -93.76 -0.83 -94.58 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001484845051.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.125 kcal
(2) G-P(sol) polarization free energy of solvation -93.755 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.630 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.828 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.584 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.459 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds