Wall clock time and date at job start Sat Apr 11 2020 07:09:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31616 * 1
3 3 Si 1.86805 * 119.99772 * 2 1
4 4 H 1.48498 * 109.47324 * 270.00191 * 3 2 1
5 5 H 1.48499 * 109.46948 * 29.99970 * 3 2 1
6 6 H 1.48494 * 109.47256 * 149.99612 * 3 2 1
7 7 C 1.38806 * 120.00427 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00154 * 359.97438 * 7 2 1
9 9 N 1.36937 * 120.00115 * 180.02562 * 7 2 1
10 10 C 1.46508 * 120.00112 * 179.97438 * 9 7 2
11 11 C 1.53003 * 109.46967 * 175.02176 * 10 9 7
12 12 N 1.46499 * 109.54650 * 305.59000 * 11 10 9
13 13 C 1.34780 * 119.99307 * 304.15961 * 12 11 10
14 14 O 1.21575 * 120.00609 * 354.68035 * 13 12 11
15 15 C 1.47605 * 119.99534 * 174.68596 * 13 12 11
16 16 C 1.38564 * 119.74135 * 0.02562 * 15 13 12
17 17 N 1.33774 * 122.05617 * 180.02562 * 16 15 13
18 18 H 0.97004 * 119.63001 * 179.97438 * 17 16 15
19 19 C 1.37228 * 120.73821 * 359.95289 * 17 16 15
20 20 N 1.31998 * 134.47292 * 180.02562 * 19 17 16
21 21 C 1.33404 * 110.93611 * 179.97438 * 20 19 17
22 22 C 1.35788 * 110.88926 * 359.97438 * 21 20 19
23 23 C 1.41386 * 106.45092 * 0.02562 * 22 21 20
24 24 C 1.38754 * 135.64813 * 180.02562 * 23 22 21
25 25 C 1.53182 * 109.54154 * 65.76503 * 11 10 9
26 26 C 1.53273 * 109.06273 * 176.84716 * 25 11 10
27 27 O 1.42903 * 109.46543 * 302.44666 * 26 25 11
28 28 C 1.42904 * 114.09553 * 61.15767 * 27 26 25
29 29 C 1.53092 * 109.41472 * 298.84170 * 28 27 26
30 30 H 0.96997 * 120.00554 * 359.97438 * 1 2 3
31 31 H 0.97003 * 120.00304 * 359.97438 * 9 7 2
32 32 H 1.08998 * 109.46640 * 55.02766 * 10 9 7
33 33 H 1.08994 * 109.46977 * 295.02271 * 10 9 7
34 34 H 0.96989 * 120.00066 * 124.15895 * 12 11 10
35 35 H 1.08000 * 118.97151 * 359.97438 * 16 15 13
36 36 H 1.08000 * 124.55933 * 179.97438 * 21 20 19
37 37 H 1.08000 * 126.77311 * 179.97438 * 22 21 20
38 38 H 1.08001 * 120.73609 * 359.70171 * 24 23 22
39 39 H 1.09000 * 109.52185 * 296.83997 * 25 11 10
40 40 H 1.09001 * 109.52222 * 57.02615 * 25 11 10
41 41 H 1.09004 * 109.46261 * 182.44926 * 26 25 11
42 42 H 1.09002 * 109.46760 * 62.44818 * 26 25 11
43 43 H 1.08997 * 109.48174 * 178.86635 * 28 27 26
44 44 H 1.08996 * 109.49104 * 58.83094 * 28 27 26
45 45 H 1.09000 * 109.52933 * 297.70770 * 29 28 27
46 46 H 1.08997 * 109.57957 * 177.54565 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 2.4976 2.0466 -1.4000
5 1 1.4475 2.6527 0.7000
6 1 3.5476 1.4404 0.7001
7 6 2.0103 -1.2020 -0.0005
8 1 1.4704 -2.1374 -0.0005
9 7 3.3796 -1.2020 0.0000
10 6 4.1123 -2.4707 0.0000
11 6 5.6119 -2.1937 -0.1245
12 7 5.8606 -1.3640 -1.3060
13 6 5.4352 -1.7726 -2.5179
14 8 4.9318 -2.8717 -2.6469
15 6 5.5806 -0.8855 -3.6887
16 6 6.1557 0.3658 -3.5358
17 7 6.3097 1.2069 -4.5646
18 1 6.7167 2.0751 -4.4175
19 6 5.8988 0.8552 -5.8258
20 7 5.9162 1.4505 -7.0037
21 6 5.3840 0.6660 -7.9423
22 6 4.9799 -0.5171 -7.4124
23 6 5.2851 -0.4631 -6.0329
24 6 5.1369 -1.3174 -4.9497
25 6 6.1035 -1.4619 1.1281
26 6 7.6195 -1.2600 1.0274
27 8 8.2595 -2.5283 0.8719
28 6 7.8721 -3.2365 -0.3073
29 6 6.3682 -3.5188 -0.2604
30 1 -0.4851 0.8400 0.0004
31 1 3.8647 -0.3619 0.0004
32 1 3.7841 -3.0796 -0.8424
33 1 3.9172 -3.0029 0.9310
34 1 6.3312 -0.5207 -1.2161
35 1 6.4892 0.6720 -2.5553
36 1 5.2875 0.9355 -8.9837
37 1 4.5160 -1.3372 -7.9403
38 1 4.6854 -2.2909 -5.0723
39 1 5.6090 -0.4933 1.2018
40 1 5.8735 -2.0574 2.0117
41 1 7.9829 -0.7785 1.9353
42 1 7.8458 -0.6307 0.1666
43 1 8.4172 -4.1788 -0.3609
44 1 8.1015 -2.6333 -1.1857
45 1 6.1435 -4.1557 0.5951
46 1 6.0619 -4.0204 -1.1783
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001733830882.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:09:17
Heat of formation + Delta-G solvation = 32.284362 kcal
Electronic energy + Delta-G solvation = -31195.657442 eV
Core-core repulsion = 27087.407663 eV
Total energy + Delta-G solvation = -4108.249779 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.164 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.68124 -40.69789 -38.82206 -37.98690 -36.06287 -33.99518 -33.88408 -32.14613
-31.27961 -30.88916 -29.50503 -28.93160 -26.98874 -24.32578 -24.15152 -23.86368
-23.28369 -21.70154 -21.39464 -20.54725 -19.44781 -18.18722 -17.87729 -17.48199
-16.90198 -16.58307 -16.14651 -16.06587 -15.58191 -15.44671 -14.94944 -14.79417
-14.63818 -14.40743 -14.06298 -13.81210 -13.35216 -13.25757 -12.89843 -12.70227
-12.66495 -12.53798 -12.42428 -12.10098 -11.92344 -11.84881 -11.41146 -11.23828
-11.02170 -10.86392 -10.75598 -10.49317 -10.30705 -9.87000 -9.65167 -9.60781
-9.59014 -8.94580 -8.88946 -8.30681 -7.89155 -7.25701 -5.80455 -3.15133
0.04489 0.83410 2.07566 2.82654 3.02444 3.18737 3.24323 3.34200
3.35693 3.56872 3.75245 3.85524 4.21720 4.32789 4.50465 4.52005
4.73256 4.75961 4.81474 4.92178 4.94219 5.00645 5.04368 5.23089
5.45801 5.50794 5.52893 5.55489 5.61277 5.72720 5.74821 5.80762
5.82489 5.86339 5.93115 6.07440 6.18401 6.21640 6.29113 6.36925
6.65789 6.69476 6.81455 7.00070 7.05749 7.47364 7.94422 7.96286
8.24341 8.38106 9.16615 9.88027 10.07863 11.38534
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.007996 B = 0.004913 C = 0.003590
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3500.710259 B = 5697.965732 C = 7798.005884
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C 0.004 3.996
3 Si 0.881 3.119
4 H -0.287 1.287
5 H -0.291 1.291
6 H -0.280 1.280
7 C -0.235 4.235
8 H 0.090 0.910
9 N -0.748 5.748
10 C 0.146 3.854
11 C 0.173 3.827
12 N -0.719 5.719
13 C 0.585 3.415
14 O -0.515 6.515
15 C -0.223 4.223
16 C 0.176 3.824
17 N -0.487 5.487
18 H 0.426 0.574
19 C 0.242 3.758
20 N -0.531 5.531
21 C 0.050 3.950
22 C -0.219 4.219
23 C -0.169 4.169
24 C 0.088 3.912
25 C -0.158 4.158
26 C 0.061 3.939
27 O -0.383 6.383
28 C 0.065 3.935
29 C -0.163 4.163
30 H 0.259 0.741
31 H 0.356 0.644
32 H 0.059 0.941
33 H 0.031 0.969
34 H 0.388 0.612
35 H 0.176 0.824
36 H 0.160 0.840
37 H 0.140 0.860
38 H 0.153 0.847
39 H 0.084 0.916
40 H 0.093 0.907
41 H 0.095 0.905
42 H 0.043 0.957
43 H 0.092 0.908
44 H 0.047 0.953
45 H 0.081 0.919
46 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.907 -0.608 -4.791 20.485
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.582 5.582
2 C -0.192 4.192
3 Si 0.712 3.288
4 H -0.214 1.214
5 H -0.217 1.217
6 H -0.207 1.207
7 C -0.366 4.366
8 H 0.108 0.892
9 N -0.394 5.394
10 C 0.019 3.981
11 C 0.087 3.913
12 N -0.372 5.372
13 C 0.372 3.628
14 O -0.390 6.390
15 C -0.233 4.233
16 C 0.032 3.968
17 N -0.080 5.080
18 H 0.264 0.736
19 C -0.006 4.006
20 N -0.251 5.251
21 C -0.093 4.093
22 C -0.241 4.241
23 C -0.177 4.177
24 C 0.065 3.935
25 C -0.196 4.196
26 C -0.016 4.016
27 O -0.302 6.302
28 C -0.011 4.011
29 C -0.202 4.202
30 H 0.069 0.931
31 H 0.188 0.812
32 H 0.077 0.923
33 H 0.049 0.951
34 H 0.222 0.778
35 H 0.193 0.807
36 H 0.177 0.823
37 H 0.158 0.842
38 H 0.170 0.830
39 H 0.102 0.898
40 H 0.111 0.889
41 H 0.113 0.887
42 H 0.061 0.939
43 H 0.110 0.890
44 H 0.065 0.935
45 H 0.100 0.900
46 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges 19.754 -0.592 -5.091 20.408
hybrid contribution 0.167 1.593 0.109 1.605
sum 19.921 1.001 -4.982 20.559
Atomic orbital electron populations
1.69679 1.05001 1.25622 1.57848 1.24640 0.95164 0.96862 1.02499
0.86609 0.79165 0.85669 0.77378 1.21425 1.21709 1.20672 1.19051
0.80556 0.94706 1.42241 0.89198 1.42537 1.03883 1.01741 1.91223
1.21078 0.86856 0.90066 1.00133 1.20690 0.97104 0.90150 0.83344
1.45902 1.59976 1.24254 1.07055 1.17392 0.77685 0.85988 0.81772
1.90754 1.42923 1.20768 1.84597 1.19448 1.12209 0.95527 0.96091
1.22203 0.93611 0.89861 0.91164 1.40188 1.45357 1.17522 1.04903
0.73584 1.20442 1.00620 0.93424 0.86133 1.69504 1.25418 1.33473
0.96690 1.22319 0.98087 0.91084 0.97775 1.21431 1.09774 1.01038
0.91883 1.20122 1.07523 0.94562 0.95491 1.21451 0.85130 0.98156
0.88813 1.22526 0.95969 1.02857 0.98259 1.22616 0.92095 0.85518
1.01325 1.87926 1.66336 1.31922 1.43988 1.22537 0.94809 0.96565
0.87235 1.22558 0.95095 0.97424 1.05099 0.93096 0.81151 0.92263
0.95109 0.77784 0.80745 0.82314 0.84209 0.82968 0.89751 0.88863
0.88679 0.93880 0.89018 0.93471 0.90008 0.88451
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -29.12 13.97 55.49 0.78 -28.35 16
2 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16
3 Si 0.88 21.07 27.74 -169.99 -4.71 16.35 16
4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
6 H -0.28 -5.97 6.52 56.52 0.37 -5.60 16
7 C -0.24 -6.51 10.47 -15.06 -0.16 -6.67 16
8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16
9 N -0.75 -16.50 5.02 -59.91 -0.30 -16.80 16
10 C 0.15 2.70 4.79 -4.04 -0.02 2.68 16
11 C 0.17 2.29 0.32 -131.63 -0.04 2.25 16
12 N -0.72 -8.49 3.69 -48.44 -0.18 -8.67 16
13 C 0.59 8.15 7.17 -12.44 -0.09 8.06 16
14 O -0.51 -8.85 12.64 5.30 0.07 -8.79 16
15 C -0.22 -2.72 5.86 -105.11 -0.62 -3.33 16
16 C 0.18 1.54 10.64 -16.59 -0.18 1.36 16
17 N -0.49 -4.51 5.27 -10.38 -0.05 -4.57 16
18 H 0.43 2.47 8.91 -40.82 -0.36 2.11 16
19 C 0.24 3.30 8.64 -153.91 -1.33 1.97 16
20 N -0.53 -7.97 11.16 -11.09 -0.12 -8.09 16
21 C 0.05 0.69 11.69 -17.75 -0.21 0.48 16
22 C -0.22 -2.96 10.99 -39.26 -0.43 -3.39 16
23 C -0.17 -2.39 6.41 -105.02 -0.67 -3.06 16
24 C 0.09 1.19 9.71 -38.55 -0.37 0.81 16
25 C -0.16 -1.83 4.84 -26.50 -0.13 -1.96 16
26 C 0.06 0.57 6.67 37.30 0.25 0.82 16
27 O -0.38 -4.23 10.77 -35.23 -0.38 -4.61 16
28 C 0.07 0.66 6.68 37.20 0.25 0.91 16
29 C -0.16 -1.95 4.82 -26.59 -0.13 -2.08 16
30 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16
31 H 0.36 7.38 4.37 -40.82 -0.18 7.20 16
32 H 0.06 1.24 6.25 -51.93 -0.32 0.92 16
33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16
34 H 0.39 3.30 5.36 -40.82 -0.22 3.08 16
35 H 0.18 0.77 6.26 -52.49 -0.33 0.44 16
36 H 0.16 1.70 8.06 -52.49 -0.42 1.27 16
37 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16
38 H 0.15 1.99 7.67 -52.49 -0.40 1.59 16
39 H 0.08 1.05 7.22 -51.93 -0.37 0.67 16
40 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16
41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16
42 H 0.04 0.32 7.01 -51.93 -0.36 -0.05 16
43 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16
44 H 0.05 0.45 7.75 -51.93 -0.40 0.05 16
45 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16
46 H 0.10 1.31 6.26 -51.93 -0.32 0.98 16
LS Contribution 366.44 15.07 5.52 5.52
Total: -1.00 -37.52 366.44 -9.19 -46.72
By element:
Atomic # 1 Polarization: 18.25 SS G_CDS: -5.83 Total: 12.42 kcal
Atomic # 6 Polarization: 2.84 SS G_CDS: -3.97 Total: -1.13 kcal
Atomic # 7 Polarization: -66.60 SS G_CDS: 0.12 Total: -66.48 kcal
Atomic # 8 Polarization: -13.08 SS G_CDS: -0.31 Total: -13.40 kcal
Atomic # 14 Polarization: 21.07 SS G_CDS: -4.71 Total: 16.35 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -37.52 -9.19 -46.72 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733830882.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.000 kcal
(2) G-P(sol) polarization free energy of solvation -37.523 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.476 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.715 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.284 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds