Wall clock time and date at job start Sat Apr 11 2020 07:09:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 C 1.40578 * 119.82867 * 2 1
4 4 C 1.35898 * 119.73014 * 180.02562 * 3 2 1
5 5 C 1.41180 * 119.34686 * 359.97438 * 4 3 2
6 6 N 1.32238 * 132.04804 * 179.97438 * 5 4 3
7 7 C 1.34573 * 109.02679 * 180.02562 * 6 5 4
8 8 C 1.47592 * 125.91916 * 180.02562 * 7 6 5
9 9 O 1.21592 * 120.00211 * 187.04193 * 8 7 6
10 10 N 1.34778 * 119.99885 * 7.03863 * 8 7 6
11 11 C 1.47149 * 120.98199 * 356.32018 * 10 8 7
12 12 C 1.53293 * 108.41481 * 129.42362 * 11 10 8
13 13 O 1.43049 * 109.17751 * 52.28857 * 12 11 10
14 14 C 1.42956 * 114.18295 * 297.43613 * 13 12 11
15 15 H 1.09005 * 109.55259 * 302.63287 * 14 13 12
16 16 C 1.53000 * 109.51103 * 182.51405 * 14 13 12
17 17 N 1.46491 * 109.47494 * 65.24984 * 16 14 13
18 18 C 1.36942 * 120.00133 * 180.02562 * 17 16 14
19 19 H 1.08003 * 119.99819 * 359.97438 * 18 17 16
20 20 C 1.38809 * 120.00034 * 180.02562 * 18 17 16
21 21 N 1.31617 * 120.00315 * 359.97438 * 20 18 17
22 22 Si 1.86806 * 120.00027 * 180.02562 * 20 18 17
23 23 H 1.48489 * 109.47027 * 89.99552 * 22 20 18
24 24 H 1.48498 * 109.46869 * 209.99561 * 22 20 18
25 25 H 1.48496 * 109.46680 * 329.99331 * 22 20 18
26 26 C 1.47151 * 120.98164 * 176.29821 * 10 8 7
27 27 C 1.36574 * 108.16401 * 0.26536 * 7 6 5
28 28 N 1.36195 * 107.09257 * 359.58207 * 27 7 6
29 29 C 1.34844 * 119.83225 * 180.02562 * 2 1 3
30 30 H 1.09002 * 109.47210 * 90.00365 * 1 2 3
31 31 H 1.09006 * 109.46879 * 209.99682 * 1 2 3
32 32 H 1.08997 * 109.47187 * 330.00053 * 1 2 3
33 33 H 1.07996 * 120.13551 * 359.97438 * 3 2 1
34 34 H 1.07994 * 120.31980 * 180.02562 * 4 3 2
35 35 H 1.09008 * 109.68044 * 249.16410 * 11 10 8
36 36 H 1.09000 * 109.68453 * 9.67891 * 11 10 8
37 37 H 1.09004 * 109.51195 * 172.24330 * 12 11 10
38 38 H 1.08995 * 109.51413 * 292.39637 * 12 11 10
39 39 H 1.09005 * 109.47374 * 185.25720 * 16 14 13
40 40 H 1.09007 * 109.46620 * 305.24681 * 16 14 13
41 41 H 0.96997 * 120.00387 * 0.02562 * 17 16 14
42 42 H 0.96998 * 120.00617 * 180.02562 * 21 20 18
43 43 H 1.09005 * 109.67948 * 350.27914 * 26 10 8
44 44 H 1.09003 * 109.68547 * 110.79355 * 26 10 8
45 45 H 1.08006 * 126.45639 * 179.69922 * 27 7 6
46 46 H 1.07999 * 119.67848 * 0.02562 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2062 1.2195 0.0000
4 6 3.5652 1.2172 -0.0005
5 6 4.2550 -0.0146 -0.0005
6 7 5.5445 -0.3076 -0.0014
7 6 5.6905 -1.6454 -0.0015
8 6 6.9726 -2.3764 -0.0018
9 8 6.9831 -3.5854 -0.1310
10 7 8.1318 -1.7039 0.1410
11 6 8.1506 -0.2346 0.2182
12 6 8.9720 0.1754 1.4458
13 8 10.2452 -0.4749 1.3978
14 6 10.1764 -1.9018 1.4519
15 1 9.6544 -2.2078 2.3587
16 6 11.5921 -2.4819 1.4569
17 7 12.2779 -2.0856 2.6893
18 6 13.5663 -2.4903 2.9164
19 1 14.0767 -3.1019 2.1871
20 6 14.2159 -2.1152 4.0843
21 7 13.5938 -1.3703 4.9733
22 14 15.9737 -2.6667 4.3938
23 1 16.9133 -1.6583 3.8414
24 1 16.1990 -2.8051 5.8551
25 1 16.2059 -3.9751 3.7310
26 6 9.4161 -2.4174 0.2247
27 6 4.4466 -2.2094 -0.0066
28 7 3.5444 -1.1891 -0.0002
29 6 2.1777 -1.1698 -0.0005
30 1 -0.3634 -0.0001 -1.0277
31 1 -0.3633 -0.8901 0.5138
32 1 -0.3633 0.8900 0.5138
33 1 1.6656 2.1545 -0.0004
34 1 4.1119 2.1485 -0.0001
35 1 8.6078 0.1746 -0.6828
36 1 7.1320 0.1410 0.3159
37 1 9.1139 1.2561 1.4445
38 1 8.4451 -0.1223 2.3524
39 1 11.5395 -3.5693 1.4039
40 1 12.1432 -2.1025 0.5963
41 1 11.8195 -1.5366 3.3444
42 1 14.0479 -1.1079 5.7893
43 1 9.2355 -3.4874 0.3275
44 1 10.0004 -2.2286 -0.6759
45 1 4.2209 -3.2656 -0.0126
46 1 1.6298 -2.1004 -0.0014
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001280598684.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:09:55
Heat of formation + Delta-G solvation = 46.228415 kcal
Electronic energy + Delta-G solvation = -29341.312354 eV
Core-core repulsion = 25233.667235 eV
Total energy + Delta-G solvation = -4107.645119 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.164 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-43.34600 -40.14898 -38.45565 -37.82169 -35.02152 -34.37085 -34.06877 -32.74194
-32.01562 -30.06774 -29.50347 -28.14374 -27.42877 -25.68411 -24.26002 -23.35978
-23.20078 -22.57247 -21.84601 -20.67276 -19.38118 -18.30558 -17.51766 -17.09445
-16.70003 -16.54620 -16.25856 -15.84261 -15.45187 -15.20186 -15.06710 -14.99377
-14.39854 -14.36566 -14.21945 -14.07479 -13.70807 -13.18816 -13.10186 -12.98792
-12.86723 -12.59257 -12.41414 -12.21036 -12.06545 -11.83951 -11.48497 -11.47878
-10.85120 -10.81621 -10.74558 -10.56276 -10.37762 -10.02881 -9.78334 -9.65782
-9.43871 -9.23041 -8.79476 -8.43331 -8.32310 -6.81262 -5.65749 -2.94118
0.13181 0.71774 1.69987 1.98299 2.85718 2.88860 3.31218 3.51105
3.55434 3.56966 3.57540 3.86115 4.08545 4.17092 4.22275 4.38256
4.61028 4.66733 4.75198 4.89473 4.93002 4.95043 5.01435 5.23778
5.26926 5.31143 5.34271 5.43759 5.48142 5.51453 5.60558 5.66574
5.67617 5.82064 5.92363 5.94713 6.02709 6.11923 6.26263 6.37440
6.40975 6.63774 6.71982 6.80618 7.17396 7.40483 7.64378 7.78757
8.07614 8.52408 9.63878 10.22029 10.58009 11.57181
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.026871 B = 0.001975 C = 0.001916
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1041.772221 B =14173.517675 C =14607.626094
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 C -0.103 4.103
3 C -0.097 4.097
4 C -0.073 4.073
5 C 0.224 3.776
6 N -0.462 5.462
7 C 0.016 3.984
8 C 0.599 3.401
9 O -0.539 6.539
10 N -0.592 5.592
11 C 0.033 3.967
12 C 0.048 3.952
13 O -0.362 6.362
14 C 0.075 3.925
15 H 0.062 0.938
16 C 0.163 3.837
17 N -0.726 5.726
18 C -0.237 4.237
19 H 0.071 0.929
20 C -0.015 4.015
21 N -0.932 5.932
22 Si 0.908 3.092
23 H -0.290 1.290
24 H -0.292 1.292
25 H -0.282 1.282
26 C 0.084 3.916
27 C -0.015 4.015
28 N -0.360 5.360
29 C 0.049 3.951
30 H 0.077 0.923
31 H 0.071 0.929
32 H 0.076 0.924
33 H 0.145 0.855
34 H 0.157 0.843
35 H 0.070 0.930
36 H 0.157 0.843
37 H 0.101 0.899
38 H 0.049 0.951
39 H 0.036 0.964
40 H 0.030 0.970
41 H 0.387 0.613
42 H 0.254 0.746
43 H 0.101 0.899
44 H 0.079 0.921
45 H 0.197 0.803
46 H 0.166 0.834
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -32.485 5.777 -12.971 35.453
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C -0.106 4.106
3 C -0.120 4.120
4 C -0.093 4.093
5 C -0.020 4.020
6 N -0.184 5.184
7 C -0.117 4.117
8 C 0.386 3.614
9 O -0.416 6.416
10 N -0.324 5.324
11 C -0.090 4.090
12 C -0.030 4.030
13 O -0.280 6.280
14 C 0.016 3.984
15 H 0.080 0.920
16 C 0.035 3.965
17 N -0.371 5.371
18 C -0.368 4.368
19 H 0.089 0.911
20 C -0.211 4.211
21 N -0.581 5.581
22 Si 0.739 3.261
23 H -0.218 1.218
24 H -0.219 1.219
25 H -0.208 1.208
26 C -0.038 4.038
27 C -0.150 4.150
28 N -0.031 5.031
29 C -0.072 4.072
30 H 0.096 0.904
31 H 0.090 0.910
32 H 0.095 0.905
33 H 0.163 0.837
34 H 0.174 0.826
35 H 0.088 0.912
36 H 0.173 0.827
37 H 0.119 0.881
38 H 0.067 0.933
39 H 0.053 0.947
40 H 0.048 0.952
41 H 0.221 0.779
42 H 0.064 0.936
43 H 0.119 0.881
44 H 0.097 0.903
45 H 0.214 0.786
46 H 0.183 0.817
Dipole moment (debyes) X Y Z Total
from point charges -31.461 5.613 -13.069 34.526
hybrid contribution 0.049 -0.690 0.449 0.825
sum -31.411 4.922 -12.621 34.208
Atomic orbital electron populations
1.20711 0.88752 1.03731 1.03110 1.19542 0.97449 0.91649 1.01988
1.21038 0.93416 0.98265 0.99323 1.20376 0.93679 0.94734 1.00472
1.21154 0.87456 0.87497 1.05927 1.70358 1.12654 1.12846 1.22538
1.20588 0.93606 0.89794 1.07691 1.16924 0.81782 0.85851 0.76883
1.90800 1.86627 1.13082 1.51112 1.47932 1.05804 1.08113 1.70531
1.23660 1.07258 0.78857 0.99209 1.22936 0.85358 0.98288 0.96393
1.88139 1.27155 1.18281 1.94409 1.22753 0.98257 0.81548 0.95812
0.91999 1.20621 0.88068 0.96062 0.91741 1.42233 1.13402 1.62647
1.18782 1.19243 0.89613 1.25842 1.02149 0.91123 1.24743 0.98451
1.00735 0.97181 1.69678 1.36782 1.41236 1.10430 0.86170 0.84867
0.78093 0.76956 1.21768 1.21860 1.20782 1.22404 0.83071 0.98569
0.99785 1.22593 0.87062 0.94152 1.11229 1.42669 1.06251 1.08599
1.45538 1.21483 0.80394 1.00743 1.04530 0.90440 0.90996 0.90488
0.83690 0.82582 0.91212 0.82726 0.88074 0.93274 0.94667 0.95248
0.77915 0.93619 0.88078 0.90272 0.78594 0.81701
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.16 10.00 36.00 0.36 0.20 16
2 C -0.10 -0.44 5.85 -104.95 -0.61 -1.06 16
3 C -0.10 -0.43 9.73 -39.54 -0.38 -0.82 16
4 C -0.07 -0.48 10.11 -39.30 -0.40 -0.88 16
5 C 0.22 2.24 7.79 -156.04 -1.22 1.02 16
6 N -0.46 -5.66 7.64 -9.35 -0.07 -5.73 16
7 C 0.02 0.21 6.72 -83.45 -0.56 -0.35 16
8 C 0.60 9.39 7.71 -12.44 -0.10 9.29 16
9 O -0.54 -9.55 16.36 5.28 0.09 -9.47 16
10 N -0.59 -9.19 3.02 -173.48 -0.52 -9.72 16
11 C 0.03 0.45 6.48 -3.54 -0.02 0.43 16
12 C 0.05 0.73 6.99 37.31 0.26 0.99 16
13 O -0.36 -7.03 10.34 -35.23 -0.36 -7.39 16
14 C 0.08 1.42 2.81 -26.58 -0.07 1.35 16
15 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16
16 C 0.16 3.57 5.93 -4.05 -0.02 3.54 16
17 N -0.73 -19.79 5.55 -59.91 -0.33 -20.13 16
18 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16
19 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16
20 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16
21 N -0.93 -29.45 13.06 55.49 0.72 -28.73 16
22 Si 0.91 23.24 29.55 -169.99 -5.02 18.21 16
23 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16
24 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16
25 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16
26 C 0.08 1.37 5.91 -3.54 -0.02 1.35 16
27 C -0.02 -0.16 11.47 -16.22 -0.19 -0.35 16
28 N -0.36 -3.21 2.93 -62.37 -0.18 -3.40 16
29 C 0.05 0.28 10.54 -16.59 -0.17 0.10 16
30 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16
31 H 0.07 0.06 8.07 -51.93 -0.42 -0.36 16
32 H 0.08 0.06 8.09 -51.93 -0.42 -0.36 16
33 H 0.15 0.25 8.06 -52.49 -0.42 -0.18 16
34 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16
35 H 0.07 0.94 8.14 -51.92 -0.42 0.51 16
36 H 0.16 2.03 3.80 -75.40 -0.29 1.74 16
37 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16
38 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16
39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16
40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16
41 H 0.39 11.21 7.67 -40.82 -0.31 10.90 16
42 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16
43 H 0.10 1.65 7.11 -51.93 -0.37 1.28 16
44 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16
45 H 0.20 1.63 8.06 -52.48 -0.42 1.20 16
46 H 0.17 0.46 8.06 -52.49 -0.42 0.03 16
LS Contribution 381.55 15.07 5.75 5.75
Total: -1.00 -37.27 381.55 -9.76 -47.03
By element:
Atomic # 1 Polarization: 12.86 SS G_CDS: -6.43 Total: 6.43 kcal
Atomic # 6 Polarization: 10.53 SS G_CDS: -3.40 Total: 7.14 kcal
Atomic # 7 Polarization: -67.31 SS G_CDS: -0.39 Total: -67.70 kcal
Atomic # 8 Polarization: -16.58 SS G_CDS: -0.28 Total: -16.86 kcal
Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.21 kcal
Total LS contribution 5.75 Total: 5.75 kcal
Total: -37.27 -9.76 -47.03 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001280598684.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.256 kcal
(2) G-P(sol) polarization free energy of solvation -37.265 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.991 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.027 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.228 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds