Wall clock time and date at job start Sat Apr 11 2020 07:07:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 N 1.29811 * 126.33508 * 2 1
4 4 O 1.41327 * 109.72678 * 180.02562 * 3 2 1
5 5 C 1.34838 * 109.42243 * 359.97438 * 4 3 2
6 6 N 1.32444 * 133.10260 * 180.02562 * 5 4 3
7 7 C 1.31559 * 122.03424 * 179.97438 * 6 5 4
8 8 C 1.50697 * 119.17568 * 180.02562 * 7 6 5
9 9 C 1.38599 * 121.65391 * 359.67659 * 7 6 5
10 10 C 1.39441 * 119.19594 * 0.61579 * 9 7 6
11 11 C 1.48009 * 121.10237 * 179.69161 * 10 9 7
12 12 O 1.21526 * 120.00360 * 177.15339 * 11 10 9
13 13 N 1.34777 * 119.99969 * 357.16257 * 11 10 9
14 14 C 1.46497 * 120.00402 * 179.97438 * 13 11 10
15 15 C 1.52996 * 109.47575 * 179.97438 * 14 13 11
16 16 N 1.46496 * 109.47232 * 180.02562 * 15 14 13
17 17 C 1.36938 * 119.99961 * 269.99651 * 16 15 14
18 18 H 1.08002 * 119.99969 * 138.67693 * 17 16 15
19 19 C 1.38807 * 120.00318 * 318.68577 * 17 16 15
20 20 N 1.31620 * 119.99761 * 348.01992 * 19 17 16
21 21 Si 1.86792 * 120.00522 * 168.02150 * 19 17 16
22 22 H 1.48505 * 109.47429 * 89.99740 * 21 19 17
23 23 H 1.48501 * 109.47544 * 210.00009 * 21 19 17
24 24 H 1.48504 * 109.47302 * 330.00099 * 21 19 17
25 25 C 1.46499 * 120.00431 * 89.99946 * 16 15 14
26 26 C 1.52996 * 117.50087 * 182.13255 * 25 16 15
27 27 C 1.52999 * 117.50381 * 113.47007 * 25 16 15
28 28 C 1.40525 * 106.85989 * 0.02562 * 5 4 3
29 29 H 1.09007 * 109.47036 * 262.78595 * 1 2 3
30 30 H 1.09001 * 109.47318 * 22.78147 * 1 2 3
31 31 H 1.09001 * 109.47222 * 142.79097 * 1 2 3
32 32 H 1.09000 * 109.47267 * 89.99815 * 8 7 6
33 33 H 1.09000 * 109.47363 * 210.00151 * 8 7 6
34 34 H 1.09000 * 109.46990 * 329.99929 * 8 7 6
35 35 H 1.08001 * 120.39943 * 180.31286 * 9 7 6
36 36 H 0.97010 * 119.99869 * 359.97438 * 13 11 10
37 37 H 1.09005 * 109.46920 * 59.99318 * 14 13 11
38 38 H 1.09002 * 109.46886 * 300.00460 * 14 13 11
39 39 H 1.08997 * 109.47173 * 59.99712 * 15 14 13
40 40 H 1.09002 * 109.46964 * 299.99944 * 15 14 13
41 41 H 0.97005 * 120.00326 * 175.01597 * 20 19 17
42 42 H 1.09007 * 115.54558 * 327.80106 * 25 16 15
43 43 H 1.08997 * 117.49808 * 359.97438 * 26 25 16
44 44 H 1.09005 * 117.49584 * 145.02326 * 26 25 16
45 45 H 1.08994 * 117.49990 * 214.98734 * 27 25 16
46 46 H 1.09005 * 117.49405 * 359.97438 * 27 25 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2761 1.0457 0.0000
4 8 3.6304 0.6418 -0.0006
5 6 3.6966 -0.7050 -0.0004
6 7 4.7069 -1.5614 -0.0003
7 6 4.5181 -2.8634 0.0004
8 6 5.7147 -3.7793 0.0010
9 6 3.2461 -3.4138 0.0077
10 6 2.1384 -2.5669 0.0015
11 6 0.7612 -3.1092 0.0021
12 8 -0.1895 -2.3536 0.0488
13 7 0.5615 -4.4411 -0.0490
14 6 -0.8016 -4.9780 -0.0478
15 6 -0.7481 -6.5057 -0.1119
16 7 -2.1111 -7.0425 -0.1113
17 6 -2.7284 -7.3425 1.0737
18 1 -3.7697 -7.0951 1.2179
19 6 -2.0157 -7.9643 2.0896
20 7 -0.8290 -8.4771 1.8423
21 14 -2.7407 -8.0736 3.8076
22 1 -3.5299 -9.3253 3.9333
23 1 -1.6437 -8.0774 4.8086
24 1 -3.6250 -6.9048 4.0470
25 6 -2.8139 -7.2586 -1.3785
26 6 -4.2527 -7.7742 -1.3093
27 6 -3.1282 -8.7025 -1.7749
28 6 2.3734 -1.1781 -0.0003
29 1 -0.3633 -0.1291 1.0196
30 1 -0.3634 0.9475 -0.3979
31 1 -0.3634 -0.8185 -0.6215
32 1 6.0032 -3.9996 1.0288
33 1 5.4624 -4.7072 -0.5124
34 1 6.5442 -3.2937 -0.5130
35 1 3.1145 -4.4858 0.0132
36 1 1.3203 -5.0443 -0.0866
37 1 -1.3429 -4.5971 -0.9139
38 1 -1.3126 -4.6699 0.8643
39 1 -0.2067 -6.8869 0.7539
40 1 -0.2372 -6.8134 -1.0243
41 1 -0.2999 -8.8470 2.5664
42 1 -2.5676 -6.5595 -2.1777
43 1 -4.6763 -7.9531 -0.3211
44 1 -4.9529 -7.4147 -2.0634
45 1 -3.0890 -8.9534 -2.8348
46 1 -2.8116 -9.4918 -1.0930
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001714669830.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:07:37
Heat of formation + Delta-G solvation = 105.779005 kcal
Electronic energy + Delta-G solvation = -29707.561617 eV
Core-core repulsion = 25602.498805 eV
Total energy + Delta-G solvation = -4105.062812 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.164 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.30034 -39.91297 -38.93881 -37.21112 -35.28234 -34.69974 -33.52864 -32.72781
-32.30489 -30.85453 -28.81084 -28.14164 -27.60857 -25.12795 -24.26826 -23.14665
-21.91383 -21.45309 -21.29615 -20.07556 -19.73170 -18.32051 -17.93828 -17.50011
-16.69772 -16.36040 -15.75444 -15.54371 -15.16561 -15.05621 -14.69402 -14.52764
-14.38556 -14.01011 -13.69028 -13.55896 -13.41681 -13.12798 -12.97422 -12.79812
-12.71100 -12.33949 -12.17134 -12.02372 -11.70622 -11.57094 -11.23911 -11.08247
-10.85486 -10.81652 -10.43912 -10.32195 -10.26296 -10.00574 -9.73495 -9.72224
-9.53178 -9.36674 -9.21147 -8.83070 -8.65227 -6.67843 -5.93417 -3.67607
-0.10168 0.54280 1.68571 1.87104 2.63517 2.98984 3.24289 3.32260
3.35063 3.38083 3.51169 3.85180 4.06138 4.17342 4.29675 4.38357
4.69982 4.83142 4.84391 4.99698 5.15539 5.21702 5.22076 5.27716
5.37855 5.42547 5.53783 5.63888 5.67186 5.81216 5.89661 5.92743
5.95447 6.08268 6.14004 6.17547 6.36304 6.42465 6.52942 6.68412
6.83744 6.87351 6.96660 7.13838 7.30737 7.39218 7.54108 7.65494
8.19900 8.35678 8.99192 9.57385 10.15234 11.00570
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.012470 B = 0.002744 C = 0.002635
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2244.931059 B =10201.698257 C =10621.646747
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.097 4.097
2 C 0.167 3.833
3 N -0.287 5.287
4 O -0.087 6.087
5 C 0.294 3.706
6 N -0.473 5.473
7 C 0.202 3.798
8 C -0.109 4.109
9 C -0.177 4.177
10 C 0.007 3.993
11 C 0.544 3.456
12 O -0.521 6.521
13 N -0.700 5.700
14 C 0.096 3.904
15 C 0.136 3.864
16 N -0.547 5.547
17 C -0.260 4.260
18 H 0.065 0.935
19 C 0.017 3.983
20 N -0.889 5.889
21 Si 0.901 3.099
22 H -0.284 1.284
23 H -0.288 1.288
24 H -0.276 1.276
25 C 0.118 3.882
26 C -0.193 4.193
27 C -0.219 4.219
28 C -0.210 4.210
29 H 0.095 0.905
30 H 0.070 0.930
31 H 0.137 0.863
32 H 0.091 0.909
33 H 0.089 0.911
34 H 0.086 0.914
35 H 0.157 0.843
36 H 0.399 0.601
37 H 0.055 0.945
38 H 0.072 0.928
39 H 0.109 0.891
40 H 0.032 0.968
41 H 0.256 0.744
42 H 0.086 0.914
43 H 0.098 0.902
44 H 0.075 0.925
45 H 0.070 0.930
46 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.969 7.705 -5.310 12.962
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.013 4.013
3 N -0.036 5.036
4 O -0.089 6.089
5 C 0.111 3.889
6 N -0.195 5.195
7 C 0.059 3.941
8 C -0.166 4.166
9 C -0.198 4.198
10 C -0.006 4.006
11 C 0.330 3.670
12 O -0.400 6.400
13 N -0.350 5.350
14 C -0.029 4.029
15 C 0.009 3.991
16 N -0.264 5.264
17 C -0.390 4.390
18 H 0.083 0.917
19 C -0.184 4.184
20 N -0.531 5.531
21 Si 0.730 3.270
22 H -0.210 1.210
23 H -0.214 1.214
24 H -0.201 1.201
25 C 0.010 3.990
26 C -0.231 4.231
27 C -0.259 4.259
28 C -0.217 4.217
29 H 0.114 0.886
30 H 0.089 0.911
31 H 0.155 0.845
32 H 0.110 0.890
33 H 0.108 0.892
34 H 0.104 0.896
35 H 0.175 0.825
36 H 0.234 0.766
37 H 0.074 0.926
38 H 0.090 0.910
39 H 0.126 0.874
40 H 0.050 0.950
41 H 0.066 0.934
42 H 0.104 0.896
43 H 0.116 0.884
44 H 0.093 0.907
45 H 0.088 0.912
46 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges 9.334 9.826 -5.150 14.498
hybrid contribution -0.744 -1.439 0.957 1.882
sum 8.590 8.387 -4.192 12.716
Atomic orbital electron populations
1.21205 0.82881 1.05023 1.06231 1.24722 0.98996 0.88339 0.89286
1.80122 0.83808 1.17228 1.22435 1.89246 1.23853 1.14694 1.81138
1.20335 0.89127 0.86632 0.92786 1.66333 1.33059 1.02405 1.17668
1.21377 0.95068 0.88198 0.89472 1.20899 0.94220 0.97134 1.04333
1.22199 0.91703 1.01610 1.04250 1.20134 0.94940 0.91144 0.94341
1.18144 0.87632 0.83188 0.78036 1.90638 1.43174 1.56236 1.49968
1.46123 1.11365 1.05676 1.71834 1.22541 0.79809 0.98600 1.01901
1.21139 0.88247 0.87185 1.02561 1.43121 1.12809 1.70341 1.00100
1.19068 0.96571 1.32543 0.90781 0.91701 1.25341 0.97492 0.95737
0.99810 1.69869 1.12075 1.39874 1.31280 0.86341 0.78558 0.78310
0.83834 1.21005 1.21388 1.20116 1.21258 0.94291 0.93237 0.90258
1.23030 0.91985 1.05884 1.02204 1.23349 1.05585 0.97851 0.99158
1.21290 0.93316 0.94492 1.12643 0.88649 0.91148 0.84548 0.89046
0.89233 0.89557 0.82536 0.76632 0.92615 0.90979 0.87388 0.94988
0.93350 0.89597 0.88386 0.90697 0.91190 0.89000
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.17 8.65 36.01 0.31 -0.86 16
2 C 0.17 2.33 7.44 -80.23 -0.60 1.74 16
3 N -0.29 -4.30 12.81 34.84 0.45 -3.86 16
4 O -0.09 -1.36 12.06 7.65 0.09 -1.27 16
5 C 0.29 4.29 8.64 -16.43 -0.14 4.15 16
6 N -0.47 -6.17 10.25 -9.24 -0.09 -6.27 16
7 C 0.20 2.03 6.78 -82.58 -0.56 1.47 16
8 C -0.11 -0.66 10.14 36.00 0.37 -0.29 16
9 C -0.18 -1.74 9.22 -39.00 -0.36 -2.10 16
10 C 0.01 0.09 5.93 -104.46 -0.62 -0.53 16
11 C 0.54 7.69 7.79 -12.25 -0.10 7.59 16
12 O -0.52 -8.32 11.36 5.34 0.06 -8.26 16
13 N -0.70 -9.57 5.51 -61.20 -0.34 -9.90 16
14 C 0.10 1.65 6.00 -4.05 -0.02 1.62 16
15 C 0.14 2.66 5.43 -4.05 -0.02 2.63 16
16 N -0.55 -12.10 2.74 -165.67 -0.45 -12.55 16
17 C -0.26 -6.40 8.43 -15.06 -0.13 -6.52 16
18 H 0.07 1.62 6.84 -52.49 -0.36 1.27 16
19 C 0.02 0.42 5.15 -17.43 -0.09 0.33 16
20 N -0.89 -22.80 11.16 55.49 0.62 -22.18 16
21 Si 0.90 20.08 29.57 -169.99 -5.03 15.06 16
22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16
23 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16
24 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16
25 C 0.12 2.31 6.55 -67.93 -0.45 1.87 16
26 C -0.19 -3.56 9.80 -26.70 -0.26 -3.82 16
27 C -0.22 -4.14 10.38 -26.69 -0.28 -4.41 16
28 C -0.21 -2.97 6.16 -104.83 -0.65 -3.62 16
29 H 0.10 1.14 8.05 -51.93 -0.42 0.72 16
30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
31 H 0.14 1.81 5.03 -54.45 -0.27 1.54 16
32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16
33 H 0.09 0.36 8.07 -51.93 -0.42 -0.06 16
34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16
35 H 0.16 1.07 6.55 -52.49 -0.34 0.73 16
36 H 0.40 4.42 6.63 -40.82 -0.27 4.15 16
37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
38 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16
39 H 0.11 2.39 5.42 -51.93 -0.28 2.11 16
40 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16
41 H 0.26 6.40 8.32 -40.82 -0.34 6.06 16
42 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16
43 H 0.10 1.98 6.53 -51.93 -0.34 1.64 16
44 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16
45 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16
46 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16
LS Contribution 382.07 15.07 5.76 5.76
Total: -1.00 -28.98 382.07 -8.59 -37.57
By element:
Atomic # 1 Polarization: 12.72 SS G_CDS: -6.06 Total: 6.66 kcal
Atomic # 6 Polarization: 2.84 SS G_CDS: -3.59 Total: -0.75 kcal
Atomic # 7 Polarization: -54.94 SS G_CDS: 0.18 Total: -54.76 kcal
Atomic # 8 Polarization: -9.68 SS G_CDS: 0.15 Total: -9.53 kcal
Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.06 kcal
Total LS contribution 5.76 Total: 5.76 kcal
Total: -28.98 -8.59 -37.57 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714669830.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 143.344 kcal
(2) G-P(sol) polarization free energy of solvation -28.975 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.369 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.565 kcal
(6) G-S(sol) free energy of system = (1) + (5) 105.779 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds