Wall clock time and date at job start Sat Apr 11 2020 07:07:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 N 1.29811 * 126.33508 * 2 1
4 4 O 1.41327 * 109.72678 * 180.02562 * 3 2 1
5 5 C 1.34838 * 109.42243 * 359.97438 * 4 3 2
6 6 N 1.32444 * 133.10260 * 180.02562 * 5 4 3
7 7 C 1.31559 * 122.03424 * 179.97438 * 6 5 4
8 8 C 1.50697 * 119.17568 * 180.02562 * 7 6 5
9 9 C 1.38599 * 121.65391 * 359.67659 * 7 6 5
10 10 C 1.39441 * 119.19594 * 0.61579 * 9 7 6
11 11 C 1.48009 * 121.10237 * 179.69161 * 10 9 7
12 12 O 1.21526 * 120.00360 * 177.15339 * 11 10 9
13 13 N 1.34777 * 119.99969 * 357.16257 * 11 10 9
14 14 C 1.46497 * 120.00402 * 179.97438 * 13 11 10
15 15 C 1.52996 * 109.47575 * 179.97438 * 14 13 11
16 16 N 1.46496 * 109.47232 * 180.02562 * 15 14 13
17 17 C 1.36938 * 119.99961 * 269.99651 * 16 15 14
18 18 H 1.08002 * 119.99969 * 138.67693 * 17 16 15
19 19 C 1.38807 * 120.00318 * 318.68577 * 17 16 15
20 20 N 1.31620 * 119.99761 * 348.01992 * 19 17 16
21 21 Si 1.86792 * 120.00522 * 168.02150 * 19 17 16
22 22 H 1.48505 * 109.47429 * 89.99740 * 21 19 17
23 23 H 1.48501 * 109.47544 * 210.00009 * 21 19 17
24 24 H 1.48504 * 109.47302 * 330.00099 * 21 19 17
25 25 C 1.46499 * 120.00431 * 89.99946 * 16 15 14
26 26 C 1.52996 * 117.50087 * 182.13255 * 25 16 15
27 27 C 1.52999 * 117.50381 * 113.47007 * 25 16 15
28 28 C 1.40525 * 106.85989 * 0.02562 * 5 4 3
29 29 H 1.09007 * 109.47036 * 262.78595 * 1 2 3
30 30 H 1.09001 * 109.47318 * 22.78147 * 1 2 3
31 31 H 1.09001 * 109.47222 * 142.79097 * 1 2 3
32 32 H 1.09000 * 109.47267 * 89.99815 * 8 7 6
33 33 H 1.09000 * 109.47363 * 210.00151 * 8 7 6
34 34 H 1.09000 * 109.46990 * 329.99929 * 8 7 6
35 35 H 1.08001 * 120.39943 * 180.31286 * 9 7 6
36 36 H 0.97010 * 119.99869 * 359.97438 * 13 11 10
37 37 H 1.09005 * 109.46920 * 59.99318 * 14 13 11
38 38 H 1.09002 * 109.46886 * 300.00460 * 14 13 11
39 39 H 1.08997 * 109.47173 * 59.99712 * 15 14 13
40 40 H 1.09002 * 109.46964 * 299.99944 * 15 14 13
41 41 H 0.97005 * 120.00326 * 175.01597 * 20 19 17
42 42 H 1.09007 * 115.54558 * 327.80106 * 25 16 15
43 43 H 1.08997 * 117.49808 * 359.97438 * 26 25 16
44 44 H 1.09005 * 117.49584 * 145.02326 * 26 25 16
45 45 H 1.08994 * 117.49990 * 214.98734 * 27 25 16
46 46 H 1.09005 * 117.49405 * 359.97438 * 27 25 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2761 1.0457 0.0000
4 8 3.6304 0.6418 -0.0006
5 6 3.6966 -0.7050 -0.0004
6 7 4.7069 -1.5614 -0.0003
7 6 4.5181 -2.8634 0.0004
8 6 5.7147 -3.7793 0.0010
9 6 3.2461 -3.4138 0.0077
10 6 2.1384 -2.5669 0.0015
11 6 0.7612 -3.1092 0.0021
12 8 -0.1895 -2.3536 0.0488
13 7 0.5615 -4.4411 -0.0490
14 6 -0.8016 -4.9780 -0.0478
15 6 -0.7481 -6.5057 -0.1119
16 7 -2.1111 -7.0425 -0.1113
17 6 -2.7284 -7.3425 1.0737
18 1 -3.7697 -7.0951 1.2179
19 6 -2.0157 -7.9643 2.0896
20 7 -0.8290 -8.4771 1.8423
21 14 -2.7407 -8.0736 3.8076
22 1 -3.5299 -9.3253 3.9333
23 1 -1.6437 -8.0774 4.8086
24 1 -3.6250 -6.9048 4.0470
25 6 -2.8139 -7.2586 -1.3785
26 6 -4.2527 -7.7742 -1.3093
27 6 -3.1282 -8.7025 -1.7749
28 6 2.3734 -1.1781 -0.0003
29 1 -0.3633 -0.1291 1.0196
30 1 -0.3634 0.9475 -0.3979
31 1 -0.3634 -0.8185 -0.6215
32 1 6.0032 -3.9996 1.0288
33 1 5.4624 -4.7072 -0.5124
34 1 6.5442 -3.2937 -0.5130
35 1 3.1145 -4.4858 0.0132
36 1 1.3203 -5.0443 -0.0866
37 1 -1.3429 -4.5971 -0.9139
38 1 -1.3126 -4.6699 0.8643
39 1 -0.2067 -6.8869 0.7539
40 1 -0.2372 -6.8134 -1.0243
41 1 -0.2999 -8.8470 2.5664
42 1 -2.5676 -6.5595 -2.1777
43 1 -4.6763 -7.9531 -0.3211
44 1 -4.9529 -7.4147 -2.0634
45 1 -3.0890 -8.9534 -2.8348
46 1 -2.8116 -9.4918 -1.0930
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001714669830.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:07:36
Heat of formation + Delta-G solvation = 87.035802 kcal
Electronic energy + Delta-G solvation = -29708.374383 eV
Core-core repulsion = 25602.498805 eV
Total energy + Delta-G solvation = -4105.875578 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.164 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-43.31641 -41.02278 -39.94422 -38.78113 -36.53940 -35.81470 -35.07384 -33.81887
-33.18546 -32.46967 -29.84210 -29.48271 -28.54870 -26.55227 -25.58021 -24.20281
-23.26507 -22.83843 -22.47222 -21.55446 -21.00215 -19.32106 -19.00139 -18.60147
-17.99629 -17.74940 -17.22546 -16.93009 -16.49492 -16.30530 -16.00772 -15.65350
-15.45662 -15.15573 -14.80252 -14.64913 -14.49732 -14.42772 -14.12170 -13.98796
-13.75558 -13.45027 -13.24399 -13.04075 -12.96749 -12.83303 -12.64897 -12.60045
-12.42218 -12.25672 -12.07572 -11.91004 -11.65447 -11.33726 -11.30180 -10.88372
-10.76077 -10.59190 -10.51248 -10.12659 -10.06031 -8.45836 -7.76928 -5.55143
-1.07741 -0.40233 0.63986 0.85471 1.44660 1.49666 1.56080 1.59353
1.84554 2.39529 2.48362 2.52914 2.86951 3.15060 3.20879 3.22513
3.40727 3.45447 3.66022 3.80517 3.97956 4.16879 4.34676 4.36534
4.41706 4.45284 4.50049 4.56570 4.61696 4.65221 4.69254 4.81445
4.86620 4.88508 4.92071 4.98908 5.05417 5.11894 5.31320 5.34308
5.40105 5.55083 5.59269 5.69122 5.82197 5.85334 6.38761 6.42239
6.52324 7.09382 7.19304 7.82974 8.34226 9.11131
Molecular weight = 344.16amu
Principal moments of inertia in cm(-1)
A = 0.012470 B = 0.002744 C = 0.002635
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2244.931059 B =10201.698257 C =10621.646747
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.089 4.089
2 C 0.165 3.835
3 N -0.304 5.304
4 O -0.107 6.107
5 C 0.276 3.724
6 N -0.489 5.489
7 C 0.208 3.792
8 C -0.108 4.108
9 C -0.157 4.157
10 C -0.003 4.003
11 C 0.547 3.453
12 O -0.541 6.541
13 N -0.691 5.691
14 C 0.120 3.880
15 C 0.141 3.859
16 N -0.565 5.565
17 C -0.262 4.262
18 H 0.054 0.946
19 C -0.022 4.022
20 N -0.908 5.908
21 Si 0.948 3.052
22 H -0.287 1.287
23 H -0.289 1.289
24 H -0.276 1.276
25 C 0.103 3.897
26 C -0.185 4.185
27 C -0.213 4.213
28 C -0.229 4.229
29 H 0.095 0.905
30 H 0.087 0.913
31 H 0.128 0.872
32 H 0.107 0.893
33 H 0.119 0.881
34 H 0.088 0.912
35 H 0.193 0.807
36 H 0.413 0.587
37 H 0.057 0.943
38 H 0.042 0.958
39 H 0.085 0.915
40 H 0.047 0.953
41 H 0.254 0.746
42 H 0.113 0.887
43 H 0.073 0.927
44 H 0.108 0.892
45 H 0.101 0.899
46 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.682 6.788 -6.330 13.412
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.015 4.015
3 N -0.055 5.055
4 O -0.109 6.109
5 C 0.094 3.906
6 N -0.211 5.211
7 C 0.064 3.936
8 C -0.165 4.165
9 C -0.177 4.177
10 C -0.015 4.015
11 C 0.333 3.667
12 O -0.422 6.422
13 N -0.342 5.342
14 C -0.006 4.006
15 C 0.015 3.985
16 N -0.282 5.282
17 C -0.393 4.393
18 H 0.072 0.928
19 C -0.221 4.221
20 N -0.552 5.552
21 Si 0.776 3.224
22 H -0.214 1.214
23 H -0.215 1.215
24 H -0.202 1.202
25 C -0.005 4.005
26 C -0.223 4.223
27 C -0.254 4.254
28 C -0.236 4.236
29 H 0.113 0.887
30 H 0.106 0.894
31 H 0.146 0.854
32 H 0.125 0.875
33 H 0.137 0.863
34 H 0.107 0.893
35 H 0.210 0.790
36 H 0.251 0.749
37 H 0.075 0.925
38 H 0.060 0.940
39 H 0.103 0.897
40 H 0.066 0.934
41 H 0.063 0.937
42 H 0.130 0.870
43 H 0.092 0.908
44 H 0.126 0.874
45 H 0.119 0.881
46 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 10.065 8.907 -6.182 14.794
hybrid contribution -0.927 -1.230 1.228 1.970
sum 9.139 7.676 -4.954 12.922
Atomic orbital electron populations
1.21163 0.81790 1.05584 1.06053 1.25023 0.99621 0.88376 0.88459
1.80076 0.83741 1.17851 1.23822 1.89176 1.24316 1.15721 1.81641
1.20542 0.89837 0.86397 0.93821 1.66456 1.32889 1.03508 1.18264
1.22174 0.96652 0.87563 0.87172 1.21120 0.92458 0.97201 1.05704
1.22640 0.90700 1.02983 1.01422 1.20018 0.94774 0.90864 0.95886
1.18311 0.88101 0.82911 0.77328 1.90649 1.44073 1.56756 1.50677
1.45843 1.10570 1.05861 1.71949 1.21980 0.81246 0.96945 1.00411
1.21017 0.87054 0.88286 1.02148 1.43325 1.13619 1.70956 1.00350
1.19138 0.96271 1.31806 0.92075 0.92835 1.25809 0.97994 0.96178
1.02081 1.69964 1.12729 1.40881 1.31600 0.85607 0.77776 0.77809
0.81173 1.21418 1.21455 1.20152 1.21553 0.94870 0.94131 0.89957
1.23034 0.92082 1.05311 1.01915 1.23254 1.05621 0.96392 1.00094
1.21395 0.93182 0.95162 1.13872 0.88670 0.89408 0.85420 0.87489
0.86297 0.89293 0.79003 0.74922 0.92490 0.93978 0.89706 0.93439
0.93674 0.86975 0.90822 0.87399 0.88077 0.92542
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -2.16 8.65 71.24 0.62 -1.54 16
2 C 0.16 4.68 7.44 44.94 0.33 5.01 16
3 N -0.30 -9.37 12.81 -43.67 -0.56 -9.93 16
4 O -0.11 -3.45 12.06 29.76 0.36 -3.09 16
5 C 0.28 8.08 8.64 85.16 0.74 8.82 16
6 N -0.49 -12.23 10.25 -296.38 -3.04 -15.27 16
7 C 0.21 3.62 6.78 42.69 0.29 3.91 16
8 C -0.11 -0.90 10.14 71.24 0.72 -0.17 16
9 C -0.16 -2.64 9.22 22.65 0.21 -2.43 16
10 C 0.00 -0.06 5.93 -19.76 -0.12 -0.18 16
11 C 0.55 14.80 7.79 86.83 0.68 15.48 16
12 O -0.54 -17.08 11.36 -3.80 -0.04 -17.12 16
13 N -0.69 -17.66 5.51 -465.83 -2.57 -20.23 16
14 C 0.12 3.99 6.00 86.38 0.52 4.50 16
15 C 0.14 5.39 5.43 86.38 0.47 5.86 16
16 N -0.56 -24.64 2.74 -678.06 -1.86 -26.50 16
17 C -0.26 -12.97 8.43 84.03 0.71 -12.27 16
18 H 0.05 2.72 6.84 -2.91 -0.02 2.70 16
19 C -0.02 -1.12 5.15 84.86 0.44 -0.69 16
20 N -0.91 -46.69 11.16 21.65 0.24 -46.45 16
21 Si 0.95 41.52 29.57 68.60 2.03 43.55 16
22 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16
23 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16
24 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16
25 C 0.10 3.83 6.55 44.99 0.29 4.13 16
26 C -0.19 -6.52 9.80 30.62 0.30 -6.22 16
27 C -0.21 -7.70 10.38 30.62 0.32 -7.38 16
28 C -0.23 -6.44 6.16 -20.00 -0.12 -6.56 16
29 H 0.10 2.30 8.05 -2.38 -0.02 2.28 16
30 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16
31 H 0.13 3.40 5.03 -42.34 -0.21 3.18 16
32 H 0.11 0.66 8.14 -2.39 -0.02 0.65 16
33 H 0.12 0.35 8.07 -2.39 -0.02 0.33 16
34 H 0.09 0.76 8.14 -2.39 -0.02 0.75 16
35 H 0.19 1.77 6.55 -2.91 -0.02 1.75 16
36 H 0.41 8.03 6.63 -92.70 -0.61 7.41 16
37 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16
38 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16
39 H 0.09 3.71 5.42 -2.39 -0.01 3.70 16
40 H 0.05 1.64 8.07 -2.39 -0.02 1.62 16
41 H 0.25 12.68 8.32 -92.70 -0.77 11.91 16
42 H 0.11 3.59 8.14 -2.38 -0.02 3.57 16
43 H 0.07 2.96 6.53 -2.39 -0.02 2.94 16
44 H 0.11 3.07 8.14 -2.38 -0.02 3.05 16
45 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16
46 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16
Total: -1.00 -64.54 382.07 1.17 -63.37
By element:
Atomic # 1 Polarization: 21.19 SS G_CDS: 0.22 Total: 21.41 kcal
Atomic # 6 Polarization: 3.87 SS G_CDS: 6.39 Total: 10.26 kcal
Atomic # 7 Polarization: -110.60 SS G_CDS: -7.79 Total: -118.38 kcal
Atomic # 8 Polarization: -20.53 SS G_CDS: 0.32 Total: -20.22 kcal
Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal
Total: -64.54 1.17 -63.37 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714669830.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 150.409 kcal
(2) G-P(sol) polarization free energy of solvation -64.543 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.866 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.373 kcal
(6) G-S(sol) free energy of system = (1) + (5) 87.036 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds