Wall clock time and date at job start Sat Apr 11 2020 07:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 110.64081 * 2 1 4 4 C 1.54323 * 110.72151 * 236.66577 * 2 1 3 5 5 N 1.47023 * 107.27118 * 219.44275 * 4 2 1 6 6 C 1.36941 * 125.64915 * 178.89375 * 5 4 2 7 7 H 1.07994 * 120.00085 * 359.97438 * 6 5 4 8 8 C 1.38807 * 119.99812 * 180.02562 * 6 5 4 9 9 N 1.31623 * 120.00216 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99820 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47438 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47324 * 120.00182 * 10 8 6 13 13 H 1.48496 * 109.47044 * 239.99759 * 10 8 6 14 14 C 1.47421 * 108.70367 * 358.94013 * 5 4 2 15 15 C 1.54915 * 104.83384 * 24.12726 * 14 5 4 16 16 H 1.08999 * 111.03851 * 204.90706 * 15 14 5 17 17 N 1.46499 * 111.00324 * 81.06238 * 15 14 5 18 18 C 1.34775 * 119.99599 * 92.80600 * 17 15 14 19 19 O 1.21279 * 120.00350 * 0.02562 * 18 17 15 20 20 C 1.50701 * 120.00075 * 179.97438 * 18 17 15 21 21 H 1.09003 * 109.62720 * 29.75524 * 20 18 17 22 22 C 1.53029 * 109.55261 * 150.00137 * 20 18 17 23 23 C 1.52590 * 109.98916 * 183.50634 * 22 20 18 24 24 C 1.52587 * 110.63955 * 290.01286 * 23 22 20 25 25 C 1.53036 * 109.98599 * 69.98760 * 24 23 22 26 26 S 1.81672 * 109.54979 * 269.52235 * 20 18 17 27 27 O 1.42094 * 108.66366 * 71.51461 * 26 20 18 28 28 O 1.42104 * 108.66093 * 300.17426 * 26 20 18 29 29 H 1.08992 * 109.47173 * 296.86011 * 1 2 3 30 30 H 1.09008 * 109.47216 * 56.85856 * 1 2 3 31 31 H 1.08998 * 109.46743 * 176.85450 * 1 2 3 32 32 H 1.09000 * 109.47699 * 183.14400 * 3 2 1 33 33 H 1.09008 * 109.47449 * 303.14107 * 3 2 1 34 34 H 1.09004 * 109.47498 * 63.14219 * 3 2 1 35 35 H 1.08997 * 109.88372 * 338.86216 * 4 2 1 36 36 H 1.09007 * 109.88318 * 100.02600 * 4 2 1 37 37 H 0.97005 * 119.99815 * 179.97438 * 9 8 6 38 38 H 1.08999 * 110.36840 * 265.29415 * 14 5 4 39 39 H 1.09002 * 110.37038 * 142.96682 * 14 5 4 40 40 H 0.96993 * 120.00216 * 272.81006 * 17 15 14 41 41 H 1.09005 * 109.38854 * 63.34530 * 22 20 18 42 42 H 1.09006 * 109.38278 * 303.66433 * 22 20 18 43 43 H 1.08994 * 109.24282 * 169.71740 * 23 22 20 44 44 H 1.08994 * 109.21034 * 50.29051 * 23 22 20 45 45 H 1.08996 * 109.39015 * 309.82619 * 24 23 22 46 46 H 1.09006 * 109.38512 * 190.14297 * 24 23 22 47 47 H 1.08998 * 109.55557 * 56.20498 * 25 24 23 48 48 H 1.09006 * 109.55130 * 176.49693 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 6 2.0760 -0.7932 -1.2059 5 7 3.2445 -1.5519 -0.7364 6 6 4.0034 -2.4006 -1.4973 7 1 3.7594 -2.5574 -2.5376 8 6 5.0856 -3.0602 -0.9313 9 7 5.3828 -2.8696 0.3367 10 14 6.1204 -4.2185 -1.9691 11 1 5.5816 -4.2589 -3.3523 12 1 7.5247 -3.7363 -1.9983 13 1 6.0773 -5.5816 -1.3816 14 6 3.4633 -1.2486 0.6896 15 6 2.0789 -0.7934 1.2152 16 1 2.1843 -0.1483 2.0875 17 7 1.2271 -1.9462 1.5177 18 6 1.2025 -2.4571 2.7646 19 8 1.8852 -1.9621 3.6363 20 6 0.3259 -3.6426 3.0761 21 1 0.2144 -4.2598 2.1846 22 6 0.9619 -4.4698 4.1955 23 6 0.1270 -5.7195 4.4595 24 6 -1.2025 -5.3504 5.1111 25 6 -2.0974 -4.6285 4.1011 26 16 -1.3072 -3.0641 3.6229 27 8 -1.9986 -2.5293 2.5026 28 8 -1.1405 -2.2647 4.7858 29 1 -0.3633 0.4643 0.9167 30 1 -0.3634 0.5619 -0.8605 31 1 -0.3633 -1.0261 -0.0564 32 1 3.1576 1.4102 -0.0564 33 1 1.6716 1.9699 -0.8605 34 1 1.7629 1.9355 0.9168 35 1 1.3130 -1.4784 -1.5751 36 1 2.3741 -0.1057 -1.9976 37 1 6.1389 -3.3309 0.7323 38 1 4.1931 -0.4464 0.7992 39 1 3.7960 -2.1405 1.2205 40 1 0.6809 -2.3418 0.8207 41 1 1.0129 -3.8702 5.1044 42 1 1.9694 -4.7634 3.9007 43 1 0.6786 -6.3867 5.1217 44 1 -0.0650 -6.2286 3.5151 45 1 -1.0184 -4.6966 5.9635 46 1 -1.7015 -6.2570 5.4536 47 1 -2.2306 -5.2545 3.2188 48 1 -3.0673 -4.4235 4.5544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974662357.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:07:47 Heat of formation + Delta-G solvation = -85.118076 kcal Electronic energy + Delta-G solvation = -30581.284899 eV Core-core repulsion = 26571.095369 eV Total energy + Delta-G solvation = -4010.189530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -39.94737 -38.29347 -37.35698 -36.66463 -36.16344 -33.87154 -33.13920 -32.11802 -30.70759 -28.74072 -27.78247 -26.68080 -25.60936 -24.37997 -23.17397 -21.23479 -20.87208 -19.94034 -19.11512 -18.65798 -17.43896 -16.91713 -16.72909 -16.54832 -15.98532 -15.72255 -15.09706 -14.63653 -14.35840 -14.10947 -14.08377 -13.79959 -13.77473 -13.54943 -13.21732 -13.07112 -12.71370 -12.27773 -12.19283 -12.16992 -12.06519 -11.89995 -11.83208 -11.72869 -11.61468 -11.27427 -11.19081 -11.15066 -11.01693 -10.81833 -10.79656 -10.45163 -10.36759 -10.20340 -9.96472 -9.82057 -9.71192 -9.56710 -8.71942 -8.44009 -6.83606 -5.66123 -3.08894 -0.30460 2.39048 2.84913 3.15016 3.36506 3.42420 3.44926 3.59063 3.74477 4.20071 4.24017 4.42140 4.46125 4.51826 4.66983 4.84140 4.99814 5.02608 5.16751 5.24396 5.29053 5.33372 5.48815 5.51488 5.54690 5.62997 5.71177 5.83199 5.85707 5.96279 6.06408 6.07638 6.14329 6.21206 6.36176 6.40756 6.51194 6.63254 6.68252 6.72848 6.96550 7.44852 7.60464 7.79200 7.89780 8.35248 8.47472 9.19475 9.80939 10.45449 11.36733 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012091 B = 0.004234 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.169254 B = 6611.434982 C = 8050.157865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 C -0.128 4.128 4 C 0.142 3.858 5 N -0.602 5.602 6 C -0.222 4.222 7 H 0.077 0.923 8 C -0.010 4.010 9 N -0.918 5.918 10 Si 0.912 3.088 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.292 1.292 14 C 0.147 3.853 15 C 0.119 3.881 16 H 0.092 0.908 17 N -0.691 5.691 18 C 0.529 3.471 19 O -0.515 6.515 20 C -0.594 4.594 21 H 0.154 0.846 22 C -0.093 4.093 23 C -0.141 4.141 24 C -0.113 4.113 25 C -0.603 4.603 26 S 2.421 3.579 27 O -0.931 6.931 28 O -0.917 6.917 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.023 0.977 36 H 0.025 0.975 37 H 0.251 0.749 38 H 0.023 0.977 39 H 0.113 0.887 40 H 0.401 0.599 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.135 0.865 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.728 -4.074 7.216 17.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.090 4.090 3 C -0.186 4.186 4 C 0.016 3.984 5 N -0.328 5.328 6 C -0.351 4.351 7 H 0.095 0.905 8 C -0.206 4.206 9 N -0.567 5.567 10 Si 0.743 3.257 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.219 1.219 14 C 0.021 3.979 15 C 0.014 3.986 16 H 0.110 0.890 17 N -0.341 5.341 18 C 0.311 3.689 19 O -0.391 6.391 20 C -0.704 4.704 21 H 0.172 0.828 22 C -0.132 4.132 23 C -0.178 4.178 24 C -0.151 4.151 25 C -0.733 4.733 26 S 2.600 3.400 27 O -0.928 6.928 28 O -0.914 6.914 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.043 0.957 37 H 0.062 0.938 38 H 0.041 0.959 39 H 0.131 0.869 40 H 0.236 0.764 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.154 0.846 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.360 -2.970 7.851 17.504 hybrid contribution 0.612 -1.707 -1.218 2.185 sum -14.748 -4.677 6.633 16.834 Atomic orbital electron populations 1.21756 0.94228 1.01720 1.01506 1.21877 0.95130 0.95784 0.96173 1.21690 1.01841 0.94024 1.01033 1.21430 0.90214 0.93022 0.93714 1.44488 1.30733 1.50183 1.07395 1.19093 1.06334 1.16663 0.92983 0.90470 1.24784 0.98755 1.00668 0.96362 1.69817 1.29945 1.46075 1.10838 0.86037 0.80209 0.80395 0.79064 1.20591 1.21767 1.21898 1.22314 0.88994 1.01421 0.85178 1.22670 0.93252 0.85917 0.96772 0.89005 1.45812 1.45436 1.33017 1.09875 1.18962 0.83371 0.83005 0.83584 1.90737 1.41886 1.60153 1.46314 1.30406 1.21536 1.07379 1.11109 0.82829 1.21216 1.01056 0.94749 0.96161 1.21748 0.95349 0.98248 1.02474 1.21340 0.94494 1.02029 0.97211 1.30267 1.11602 1.21248 1.10168 1.08267 0.77391 0.78131 0.76180 1.93607 1.70667 1.75919 1.52559 1.93614 1.84900 1.64150 1.48773 0.92674 0.92592 0.92568 0.91768 0.92602 0.92956 0.95896 0.95690 0.93767 0.95894 0.86903 0.76395 0.88691 0.88621 0.89189 0.90526 0.89492 0.89365 0.84640 0.84631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.07 37.16 0.30 -1.68 16 2 C -0.09 -1.53 0.80 -152.68 -0.12 -1.65 16 3 C -0.13 -2.00 8.41 37.16 0.31 -1.69 16 4 C 0.14 2.86 6.42 -3.06 -0.02 2.84 16 5 N -0.60 -14.87 3.39 -170.07 -0.58 -15.44 16 6 C -0.22 -6.04 10.27 -15.06 -0.15 -6.19 16 7 H 0.08 2.04 7.83 -52.49 -0.41 1.62 16 8 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 9 N -0.92 -26.68 10.09 55.49 0.56 -26.12 16 10 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.15 3.57 5.28 -2.53 -0.01 3.55 16 15 C 0.12 2.35 2.67 -65.78 -0.18 2.18 16 16 H 0.09 1.85 7.44 -51.93 -0.39 1.46 16 17 N -0.69 -12.50 4.54 -51.73 -0.24 -12.73 16 18 C 0.53 9.48 6.89 -10.99 -0.08 9.41 16 19 O -0.52 -10.99 15.89 5.56 0.09 -10.90 16 20 C -0.59 -7.53 2.80 -27.87 -0.08 -7.60 16 21 H 0.15 1.47 8.14 -51.93 -0.42 1.05 16 22 C -0.09 -1.05 4.55 -26.93 -0.12 -1.18 16 23 C -0.14 -1.03 5.63 -27.15 -0.15 -1.18 16 24 C -0.11 -0.74 5.73 -26.92 -0.15 -0.89 16 25 C -0.60 -4.16 6.35 37.18 0.24 -3.92 16 26 S 2.42 28.83 4.67 -107.50 -0.50 28.33 16 27 O -0.93 -13.19 18.10 -57.81 -1.05 -14.24 16 28 O -0.92 -14.22 17.92 -57.81 -1.04 -15.26 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 31 H 0.06 0.81 6.48 -51.93 -0.34 0.48 16 32 H 0.06 1.11 7.59 -51.93 -0.39 0.72 16 33 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.02 0.45 7.76 -51.93 -0.40 0.05 16 36 H 0.03 0.51 7.85 -51.93 -0.41 0.10 16 37 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.02 0.61 7.81 -51.93 -0.41 0.20 16 39 H 0.11 3.16 5.87 -51.93 -0.30 2.85 16 40 H 0.40 6.54 7.18 -40.82 -0.29 6.24 16 41 H 0.09 1.15 7.84 -51.93 -0.41 0.75 16 42 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 45 H 0.09 0.60 8.01 -51.93 -0.42 0.19 16 46 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.14 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.14 0.71 8.14 -51.92 -0.42 0.29 16 LS Contribution 384.31 15.07 5.79 5.79 Total: -1.00 -36.03 384.31 -10.24 -46.28 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -7.95 Total: 5.88 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -0.32 Total: -8.39 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.25 Total: -54.30 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -1.99 Total: -40.40 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 28.83 SS G_CDS: -0.50 Total: 28.33 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.03 -10.24 -46.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974662357.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.840 kcal (2) G-P(sol) polarization free energy of solvation -36.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds