Wall clock time and date at job start Sat Apr 11 2020 07:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 110.64081 * 2 1 4 4 C 1.54323 * 110.72151 * 236.66577 * 2 1 3 5 5 N 1.47023 * 107.27118 * 219.44275 * 4 2 1 6 6 C 1.36941 * 125.64915 * 178.89375 * 5 4 2 7 7 H 1.07994 * 120.00085 * 359.97438 * 6 5 4 8 8 C 1.38807 * 119.99812 * 180.02562 * 6 5 4 9 9 N 1.31623 * 120.00216 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99820 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47438 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47324 * 120.00182 * 10 8 6 13 13 H 1.48496 * 109.47044 * 239.99759 * 10 8 6 14 14 C 1.47421 * 108.70367 * 358.94013 * 5 4 2 15 15 C 1.54915 * 104.83384 * 24.12726 * 14 5 4 16 16 H 1.08999 * 111.03851 * 204.90706 * 15 14 5 17 17 N 1.46499 * 111.00324 * 81.06238 * 15 14 5 18 18 C 1.34775 * 119.99599 * 92.80600 * 17 15 14 19 19 O 1.21279 * 120.00350 * 0.02562 * 18 17 15 20 20 C 1.50701 * 120.00075 * 179.97438 * 18 17 15 21 21 H 1.09003 * 109.62720 * 29.75524 * 20 18 17 22 22 C 1.53029 * 109.55261 * 150.00137 * 20 18 17 23 23 C 1.52590 * 109.98916 * 183.50634 * 22 20 18 24 24 C 1.52587 * 110.63955 * 290.01286 * 23 22 20 25 25 C 1.53036 * 109.98599 * 69.98760 * 24 23 22 26 26 S 1.81672 * 109.54979 * 269.52235 * 20 18 17 27 27 O 1.42094 * 108.66366 * 71.51461 * 26 20 18 28 28 O 1.42104 * 108.66093 * 300.17426 * 26 20 18 29 29 H 1.08992 * 109.47173 * 296.86011 * 1 2 3 30 30 H 1.09008 * 109.47216 * 56.85856 * 1 2 3 31 31 H 1.08998 * 109.46743 * 176.85450 * 1 2 3 32 32 H 1.09000 * 109.47699 * 183.14400 * 3 2 1 33 33 H 1.09008 * 109.47449 * 303.14107 * 3 2 1 34 34 H 1.09004 * 109.47498 * 63.14219 * 3 2 1 35 35 H 1.08997 * 109.88372 * 338.86216 * 4 2 1 36 36 H 1.09007 * 109.88318 * 100.02600 * 4 2 1 37 37 H 0.97005 * 119.99815 * 179.97438 * 9 8 6 38 38 H 1.08999 * 110.36840 * 265.29415 * 14 5 4 39 39 H 1.09002 * 110.37038 * 142.96682 * 14 5 4 40 40 H 0.96993 * 120.00216 * 272.81006 * 17 15 14 41 41 H 1.09005 * 109.38854 * 63.34530 * 22 20 18 42 42 H 1.09006 * 109.38278 * 303.66433 * 22 20 18 43 43 H 1.08994 * 109.24282 * 169.71740 * 23 22 20 44 44 H 1.08994 * 109.21034 * 50.29051 * 23 22 20 45 45 H 1.08996 * 109.39015 * 309.82619 * 24 23 22 46 46 H 1.09006 * 109.38512 * 190.14297 * 24 23 22 47 47 H 1.08998 * 109.55557 * 56.20498 * 25 24 23 48 48 H 1.09006 * 109.55130 * 176.49693 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 6 2.0760 -0.7932 -1.2059 5 7 3.2445 -1.5519 -0.7364 6 6 4.0034 -2.4006 -1.4973 7 1 3.7594 -2.5574 -2.5376 8 6 5.0856 -3.0602 -0.9313 9 7 5.3828 -2.8696 0.3367 10 14 6.1204 -4.2185 -1.9691 11 1 5.5816 -4.2589 -3.3523 12 1 7.5247 -3.7363 -1.9983 13 1 6.0773 -5.5816 -1.3816 14 6 3.4633 -1.2486 0.6896 15 6 2.0789 -0.7934 1.2152 16 1 2.1843 -0.1483 2.0875 17 7 1.2271 -1.9462 1.5177 18 6 1.2025 -2.4571 2.7646 19 8 1.8852 -1.9621 3.6363 20 6 0.3259 -3.6426 3.0761 21 1 0.2144 -4.2598 2.1846 22 6 0.9619 -4.4698 4.1955 23 6 0.1270 -5.7195 4.4595 24 6 -1.2025 -5.3504 5.1111 25 6 -2.0974 -4.6285 4.1011 26 16 -1.3072 -3.0641 3.6229 27 8 -1.9986 -2.5293 2.5026 28 8 -1.1405 -2.2647 4.7858 29 1 -0.3633 0.4643 0.9167 30 1 -0.3634 0.5619 -0.8605 31 1 -0.3633 -1.0261 -0.0564 32 1 3.1576 1.4102 -0.0564 33 1 1.6716 1.9699 -0.8605 34 1 1.7629 1.9355 0.9168 35 1 1.3130 -1.4784 -1.5751 36 1 2.3741 -0.1057 -1.9976 37 1 6.1389 -3.3309 0.7323 38 1 4.1931 -0.4464 0.7992 39 1 3.7960 -2.1405 1.2205 40 1 0.6809 -2.3418 0.8207 41 1 1.0129 -3.8702 5.1044 42 1 1.9694 -4.7634 3.9007 43 1 0.6786 -6.3867 5.1217 44 1 -0.0650 -6.2286 3.5151 45 1 -1.0184 -4.6966 5.9635 46 1 -1.7015 -6.2570 5.4536 47 1 -2.2306 -5.2545 3.2188 48 1 -3.0673 -4.4235 4.5544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974662357.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:07:45 Heat of formation + Delta-G solvation = -112.822212 kcal Electronic energy + Delta-G solvation = -30582.486241 eV Core-core repulsion = 26571.095369 eV Total energy + Delta-G solvation = -4011.390872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.43423 -39.74807 -38.35989 -37.52422 -37.15748 -35.72360 -34.67939 -33.00336 -32.62826 -30.10215 -28.93280 -27.97933 -27.41242 -25.53565 -24.59612 -22.49321 -21.94354 -21.56413 -20.34204 -19.83126 -18.73548 -18.65351 -17.88345 -17.61065 -17.44601 -16.68740 -16.64093 -15.85825 -15.72153 -15.53594 -15.34537 -15.20153 -14.85229 -14.69048 -14.46509 -14.19352 -13.92214 -13.78177 -13.70429 -13.30822 -13.18213 -13.06664 -13.04139 -12.91563 -12.81850 -12.68096 -12.63200 -12.56243 -12.33921 -12.06609 -11.84137 -11.81050 -11.80107 -11.59235 -11.53310 -11.42027 -11.38896 -10.88656 -10.75998 -10.07770 -8.87307 -7.76970 -5.22425 -1.18736 1.38008 1.44397 1.45745 1.56024 1.59169 1.91990 2.47887 2.63892 2.86871 3.28168 3.33416 3.47941 3.53288 3.65353 3.70803 3.75132 3.92732 3.98569 4.02906 4.08879 4.31420 4.36900 4.46007 4.52872 4.64435 4.69149 4.79677 4.84023 4.85518 4.89039 4.97384 4.98668 5.06832 5.14738 5.16560 5.18209 5.23441 5.29361 5.34744 5.46274 5.49862 5.59414 5.78691 6.27826 6.39467 7.05499 7.08148 7.76732 8.41256 9.24192 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012091 B = 0.004234 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.169254 B = 6611.434982 C = 8050.157865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.077 4.077 3 C -0.126 4.126 4 C 0.139 3.861 5 N -0.617 5.617 6 C -0.231 4.231 7 H 0.086 0.914 8 C -0.067 4.067 9 N -0.950 5.950 10 Si 0.979 3.021 11 H -0.263 1.263 12 H -0.298 1.298 13 H -0.293 1.293 14 C 0.157 3.843 15 C 0.127 3.873 16 H 0.081 0.919 17 N -0.690 5.690 18 C 0.516 3.484 19 O -0.562 6.562 20 C -0.597 4.597 21 H 0.185 0.815 22 C -0.095 4.095 23 C -0.136 4.136 24 C -0.118 4.118 25 C -0.563 4.563 26 S 2.408 3.592 27 O -0.959 6.959 28 O -0.966 6.966 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.037 0.963 36 H 0.030 0.970 37 H 0.243 0.757 38 H -0.011 1.011 39 H 0.073 0.927 40 H 0.410 0.590 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.078 0.922 46 H 0.127 0.873 47 H 0.175 0.825 48 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.132 -6.285 6.164 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.078 4.078 3 C -0.184 4.184 4 C 0.014 3.986 5 N -0.343 5.343 6 C -0.360 4.360 7 H 0.104 0.896 8 C -0.260 4.260 9 N -0.600 5.600 10 Si 0.807 3.193 11 H -0.187 1.187 12 H -0.225 1.225 13 H -0.220 1.220 14 C 0.031 3.969 15 C 0.020 3.980 16 H 0.099 0.901 17 N -0.341 5.341 18 C 0.301 3.699 19 O -0.441 6.441 20 C -0.704 4.704 21 H 0.203 0.797 22 C -0.134 4.134 23 C -0.173 4.173 24 C -0.156 4.156 25 C -0.698 4.698 26 S 2.592 3.408 27 O -0.956 6.956 28 O -0.964 6.964 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.007 0.993 39 H 0.091 0.909 40 H 0.247 0.753 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.123 0.877 44 H 0.119 0.881 45 H 0.097 0.903 46 H 0.146 0.854 47 H 0.192 0.808 48 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -18.776 -5.132 6.742 20.599 hybrid contribution 1.657 -1.040 -0.861 2.137 sum -17.119 -6.173 5.881 19.125 Atomic orbital electron populations 1.21735 0.91511 1.02511 1.02917 1.21870 0.97108 0.95766 0.93065 1.21693 1.00196 0.93425 1.03042 1.21628 0.88911 0.93163 0.94858 1.44693 1.31774 1.50415 1.07412 1.19498 1.06469 1.16483 0.93552 0.89637 1.25617 1.00286 1.02648 0.97418 1.70115 1.30155 1.47201 1.12572 0.84999 0.77966 0.77983 0.78305 1.18741 1.22502 1.21983 1.21927 0.91066 0.98483 0.85447 1.22348 0.91545 0.86732 0.97336 0.90105 1.45787 1.45039 1.32734 1.10535 1.19933 0.83261 0.83908 0.82796 1.90701 1.44021 1.61897 1.47507 1.30547 1.21508 1.05334 1.13042 0.79720 1.21262 1.00938 0.96409 0.94779 1.21789 0.95307 0.95964 1.04271 1.21493 0.94036 1.03397 0.96688 1.30051 1.11547 1.16077 1.12087 1.08519 0.76743 0.80567 0.75007 1.93561 1.70253 1.78305 1.53453 1.93555 1.85273 1.67704 1.49821 0.92355 0.89906 0.92304 0.94382 0.89897 0.91549 0.94471 0.95243 0.94709 0.99348 0.90886 0.75289 0.90691 0.91013 0.87724 0.88105 0.90331 0.85434 0.80760 0.81669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 8.07 71.98 0.58 -2.96 16 2 C -0.08 -2.63 0.80 -50.99 -0.04 -2.67 16 3 C -0.13 -3.87 8.41 71.98 0.61 -3.27 16 4 C 0.14 5.52 6.42 86.73 0.56 6.08 16 5 N -0.62 -31.29 3.39 -691.99 -2.35 -33.64 16 6 C -0.23 -12.73 10.27 84.03 0.86 -11.87 16 7 H 0.09 4.47 7.83 -2.91 -0.02 4.45 16 8 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 9 N -0.95 -58.10 10.09 21.65 0.22 -57.88 16 10 Si 0.98 45.67 29.55 68.60 2.03 47.70 16 11 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 12 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 13 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 14 C 0.16 8.15 5.28 86.86 0.46 8.61 16 15 C 0.13 5.24 2.67 46.39 0.12 5.36 16 16 H 0.08 3.50 7.44 -2.39 -0.02 3.49 16 17 N -0.69 -25.79 4.54 -435.96 -1.98 -27.77 16 18 C 0.52 19.50 6.89 87.66 0.60 20.10 16 19 O -0.56 -26.03 15.89 -3.03 -0.05 -26.08 16 20 C -0.60 -15.02 2.80 29.86 0.08 -14.93 16 21 H 0.19 3.24 8.14 -2.39 -0.02 3.22 16 22 C -0.10 -2.17 4.55 30.47 0.14 -2.03 16 23 C -0.14 -1.55 5.63 30.32 0.17 -1.38 16 24 C -0.12 -1.01 5.73 30.47 0.17 -0.84 16 25 C -0.56 -4.96 6.35 71.99 0.46 -4.50 16 26 S 2.41 54.47 4.67 -56.49 -0.26 54.21 16 27 O -0.96 -25.90 18.10 -127.40 -2.31 -28.21 16 28 O -0.97 -30.65 17.92 -127.40 -2.28 -32.93 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 30 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.06 1.58 6.48 -2.39 -0.02 1.57 16 32 H 0.04 1.35 7.59 -2.39 -0.02 1.33 16 33 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.04 1.39 7.76 -2.39 -0.02 1.37 16 36 H 0.03 1.16 7.85 -2.38 -0.02 1.14 16 37 H 0.24 14.58 8.31 -92.70 -0.77 13.81 16 38 H -0.01 -0.64 7.81 -2.39 -0.02 -0.66 16 39 H 0.07 4.41 5.87 -2.39 -0.01 4.39 16 40 H 0.41 13.38 7.18 -92.71 -0.67 12.71 16 41 H 0.07 1.96 7.84 -2.38 -0.02 1.94 16 42 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.10 0.71 8.09 -2.39 -0.02 0.70 16 45 H 0.08 0.88 8.01 -2.39 -0.02 0.86 16 46 H 0.13 0.32 8.14 -2.38 -0.02 0.30 16 47 H 0.17 0.39 8.14 -2.39 -0.02 0.37 16 48 H 0.17 0.75 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -85.96 384.31 -1.46 -87.42 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.29 Total: 24.83 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 5.24 Total: -7.66 kcal Atomic # 7 Polarization: -115.17 SS G_CDS: -4.11 Total: -119.29 kcal Atomic # 8 Polarization: -82.58 SS G_CDS: -4.64 Total: -87.22 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Atomic # 16 Polarization: 54.47 SS G_CDS: -0.26 Total: 54.21 kcal Total: -85.96 -1.46 -87.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974662357.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.407 kcal (2) G-P(sol) polarization free energy of solvation -85.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds