Wall clock time and date at job start Sat Apr 11 2020 07:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 110.78076 * 2 1 4 4 C 1.54424 * 110.72952 * 236.70843 * 2 1 3 5 5 N 1.47030 * 107.28020 * 263.84752 * 4 2 1 6 6 C 1.36933 * 125.64953 * 181.09576 * 5 4 2 7 7 H 1.08002 * 120.00088 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99849 * 179.97438 * 6 5 4 9 9 N 1.31620 * 120.00122 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99958 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46687 * 60.00398 * 10 8 6 12 12 H 1.48500 * 109.47067 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47311 * 300.00311 * 10 8 6 14 14 C 1.47433 * 108.69874 * 1.05594 * 5 4 2 15 15 C 1.54905 * 104.83202 * 335.87216 * 14 5 4 16 16 H 1.09004 * 110.99845 * 155.12033 * 15 14 5 17 17 N 1.46499 * 111.00756 * 278.93303 * 15 14 5 18 18 C 1.34777 * 120.00199 * 270.42520 * 17 15 14 19 19 O 1.21283 * 119.99750 * 359.97438 * 18 17 15 20 20 C 1.50702 * 119.99928 * 180.27479 * 18 17 15 21 21 C 1.52996 * 109.47159 * 179.72352 * 20 18 17 22 22 H 1.09005 * 110.28285 * 302.88391 * 21 20 18 23 23 C 1.54161 * 110.32001 * 180.66101 * 21 20 18 24 24 C 1.53873 * 108.70391 * 213.18699 * 23 21 20 25 25 C 1.55050 * 106.62400 * 47.18091 * 24 23 21 26 26 S 1.82915 * 110.31972 * 64.99523 * 21 20 18 27 27 O 1.42101 * 109.35721 * 234.42456 * 26 21 20 28 28 O 1.42098 * 109.35640 * 7.63135 * 26 21 20 29 29 H 1.08996 * 109.47324 * 296.76169 * 1 2 3 30 30 H 1.08997 * 109.46955 * 56.76278 * 1 2 3 31 31 H 1.09000 * 109.46587 * 176.76123 * 1 2 3 32 32 H 1.08993 * 109.47491 * 183.23705 * 3 2 1 33 33 H 1.08999 * 109.46708 * 303.24062 * 3 2 1 34 34 H 1.09004 * 109.47023 * 63.23375 * 3 2 1 35 35 H 1.08992 * 109.87924 * 144.42843 * 4 2 1 36 36 H 1.08998 * 109.87838 * 23.26261 * 4 2 1 37 37 H 0.97001 * 120.00189 * 179.97438 * 9 8 6 38 38 H 1.08998 * 110.36530 * 217.03194 * 14 5 4 39 39 H 1.09000 * 110.36294 * 94.71244 * 14 5 4 40 40 H 0.97000 * 119.99484 * 90.41617 * 17 15 14 41 41 H 1.09004 * 109.46965 * 299.72211 * 20 18 17 42 42 H 1.08994 * 109.46990 * 59.72065 * 20 18 17 43 43 H 1.08995 * 109.64824 * 333.03949 * 23 21 20 44 44 H 1.09000 * 109.64611 * 93.33838 * 23 21 20 45 45 H 1.09001 * 110.02982 * 287.89020 * 24 23 21 46 46 H 1.09006 * 110.06886 * 166.49420 * 24 23 21 47 47 H 1.09001 * 110.78742 * 199.29449 * 25 24 23 48 48 H 1.09002 * 110.95228 * 75.91313 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0766 -0.7928 -1.2072 5 7 2.3719 -2.1545 -0.7380 6 6 2.8949 -3.1652 -1.4996 7 1 3.1258 -2.9931 -2.5405 8 6 3.1283 -4.4111 -0.9337 9 7 2.8474 -4.6208 0.3350 10 14 3.8410 -5.7901 -1.9728 11 1 5.1686 -5.3797 -2.4966 12 1 3.9939 -7.0096 -1.1393 13 1 2.9279 -6.0771 -3.1082 14 6 2.0126 -2.2512 0.6886 15 6 2.0790 -0.7954 1.2138 16 1 1.4399 -0.6657 2.0872 17 7 3.4595 -0.4080 1.5145 18 6 3.9681 -0.6261 2.7434 19 8 3.2828 -1.1426 3.6005 20 6 5.3862 -0.2220 3.0546 21 6 5.7089 -0.5718 4.5086 22 1 5.0008 -0.0861 5.1802 23 6 7.1514 -0.1511 4.8530 24 6 7.7289 -1.1536 5.8676 25 6 7.4004 -2.5696 5.3281 26 16 5.6712 -2.3846 4.7493 27 8 4.7825 -2.7004 5.8122 28 8 5.5258 -3.0241 3.4887 29 1 -0.3634 0.4627 0.9175 30 1 -0.3633 0.5633 -0.8595 31 1 -0.3632 -1.0261 -0.0581 32 1 3.1610 1.4062 -0.0580 33 1 1.6750 1.9700 -0.8595 34 1 1.7690 1.9344 0.9176 35 1 2.9875 -0.3226 -1.5776 36 1 1.3270 -0.8276 -1.9978 37 1 3.0101 -5.4915 0.7303 38 1 2.7291 -2.8787 1.2186 39 1 1.0038 -2.6488 0.7995 40 1 4.0075 0.0053 0.8291 41 1 6.0693 -0.7544 2.3926 42 1 5.4990 0.8518 2.9055 43 1 7.7597 -0.1536 3.9486 44 1 7.1479 0.8487 5.2872 45 1 7.2633 -1.0083 6.8424 46 1 8.8084 -1.0255 5.9471 47 1 7.4647 -3.3114 6.1242 48 1 8.0592 -2.8341 4.5009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974872855.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:08:58 Heat of formation + Delta-G solvation = -79.912255 kcal Electronic energy + Delta-G solvation = -30481.040045 eV Core-core repulsion = 26471.076256 eV Total energy + Delta-G solvation = -4009.963789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -39.81039 -38.13220 -36.75223 -36.63910 -35.57644 -33.75301 -33.02373 -32.22516 -30.60361 -28.38220 -27.40593 -26.54753 -25.51953 -24.31346 -23.02940 -21.55054 -20.54460 -19.74105 -18.69492 -18.35478 -17.18675 -16.85123 -16.56557 -16.43340 -15.79227 -15.28292 -14.89635 -14.53827 -14.25657 -14.01691 -13.97405 -13.81825 -13.69556 -13.28943 -13.14968 -12.75408 -12.58682 -12.15820 -12.13888 -11.97411 -11.88768 -11.80188 -11.69494 -11.65131 -11.58652 -11.23987 -11.21695 -11.09696 -10.90279 -10.68122 -10.47488 -10.37315 -10.14549 -10.04334 -9.90193 -9.72962 -9.58106 -9.48154 -8.56629 -8.31577 -6.69499 -5.48886 -2.92988 0.20128 2.75772 3.03873 3.48122 3.49635 3.51817 3.55698 3.77190 4.04583 4.31666 4.40633 4.52400 4.59121 4.59959 4.77893 4.99731 5.01550 5.19034 5.26829 5.27335 5.30032 5.33594 5.41689 5.52308 5.58537 5.61577 5.64177 5.70038 5.76573 5.84280 5.90236 6.06440 6.13767 6.21782 6.29547 6.46481 6.53931 6.65469 6.75524 6.79330 7.03187 7.57573 7.73014 7.95211 8.07928 8.54344 8.64734 9.34370 9.96341 10.60098 11.53287 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010471 B = 0.004616 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.415632 B = 6065.016121 C = 7867.451684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 C -0.130 4.130 4 C 0.144 3.856 5 N -0.600 5.600 6 C -0.234 4.234 7 H 0.074 0.926 8 C -0.004 4.004 9 N -0.908 5.908 10 Si 0.911 3.089 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.287 1.287 14 C 0.143 3.857 15 C 0.122 3.878 16 H 0.087 0.913 17 N -0.693 5.693 18 C 0.510 3.490 19 O -0.551 6.551 20 C -0.118 4.118 21 C -0.543 4.543 22 H 0.148 0.852 23 C -0.113 4.113 24 C -0.119 4.119 25 C -0.614 4.614 26 S 2.398 3.602 27 O -0.927 6.927 28 O -0.905 6.905 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.020 0.980 36 H 0.022 0.978 37 H 0.254 0.746 38 H 0.119 0.881 39 H 0.019 0.981 40 H 0.398 0.602 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.132 0.868 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.607 14.598 8.659 19.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.089 4.089 3 C -0.188 4.188 4 C 0.018 3.982 5 N -0.326 5.326 6 C -0.362 4.362 7 H 0.092 0.908 8 C -0.201 4.201 9 N -0.555 5.555 10 Si 0.741 3.259 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.214 1.214 14 C 0.018 3.982 15 C 0.016 3.984 16 H 0.105 0.895 17 N -0.341 5.341 18 C 0.296 3.704 19 O -0.431 6.431 20 C -0.159 4.159 21 C -0.652 4.652 22 H 0.166 0.834 23 C -0.151 4.151 24 C -0.158 4.158 25 C -0.741 4.741 26 S 2.576 3.424 27 O -0.924 6.924 28 O -0.902 6.902 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.038 0.962 36 H 0.040 0.960 37 H 0.065 0.935 38 H 0.137 0.863 39 H 0.037 0.963 40 H 0.232 0.768 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.104 0.896 46 H 0.113 0.887 47 H 0.151 0.849 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.453 13.322 9.144 18.236 hybrid contribution 1.246 -0.012 -0.824 1.494 sum 9.699 13.311 8.320 18.452 Atomic orbital electron populations 1.21678 0.93555 1.02535 1.00785 1.21873 0.96028 0.94493 0.96547 1.21712 1.00338 0.95506 1.01212 1.21405 0.96310 0.86964 0.93527 1.44426 1.74269 1.06603 1.07307 1.18904 1.35192 0.89302 0.92789 0.90769 1.24801 1.01495 0.97608 0.96228 1.69766 1.52673 1.22505 1.10548 0.86230 0.78834 0.81891 0.78899 1.21293 1.21612 1.21385 1.22364 1.00256 0.90459 0.85169 1.22574 0.81097 0.98435 0.96275 0.89468 1.45655 1.14947 1.61568 1.11956 1.20328 0.88512 0.78622 0.82948 1.90734 1.61341 1.44091 1.46905 1.21350 0.96154 1.04818 0.93567 1.30136 1.04332 1.26556 1.04152 0.83443 1.22033 0.91553 1.00999 1.00508 1.22170 1.04021 0.90116 0.99471 1.30893 1.26290 1.04621 1.12286 1.09301 0.77709 0.78958 0.76392 1.93582 1.60123 1.82007 1.56646 1.93721 1.84517 1.71408 1.40555 0.93119 0.92745 0.91705 0.92954 0.92758 0.92895 0.96237 0.96006 0.93462 0.86332 0.96275 0.76769 0.87135 0.87313 0.89526 0.88975 0.89639 0.88716 0.84929 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.41 37.16 0.31 -1.67 16 2 C -0.09 -1.49 0.81 -152.62 -0.12 -1.61 16 3 C -0.13 -1.68 8.08 37.16 0.30 -1.38 16 4 C 0.14 2.93 6.41 -3.01 -0.02 2.91 16 5 N -0.60 -15.43 3.40 -170.00 -0.58 -16.01 16 6 C -0.23 -6.64 10.27 -15.06 -0.15 -6.79 16 7 H 0.07 2.03 7.83 -52.49 -0.41 1.61 16 8 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 9 N -0.91 -28.30 10.09 55.49 0.56 -27.74 16 10 Si 0.91 23.01 29.55 -169.99 -5.02 17.98 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 C 0.14 3.68 5.27 -2.53 -0.01 3.66 16 15 C 0.12 2.42 2.61 -65.79 -0.17 2.25 16 16 H 0.09 1.77 7.53 -51.93 -0.39 1.38 16 17 N -0.69 -12.25 4.62 -51.73 -0.24 -12.48 16 18 C 0.51 9.12 6.97 -10.98 -0.08 9.04 16 19 O -0.55 -11.99 14.46 5.21 0.08 -11.91 16 20 C -0.12 -1.43 4.74 -27.88 -0.13 -1.56 16 21 C -0.54 -6.08 2.80 -26.13 -0.07 -6.16 16 22 H 0.15 1.61 8.04 -51.93 -0.42 1.19 16 23 C -0.11 -0.77 5.94 -25.67 -0.15 -0.92 16 24 C -0.12 -0.81 6.48 -25.19 -0.16 -0.97 16 25 C -0.61 -5.77 7.31 38.24 0.28 -5.49 16 26 S 2.40 36.88 4.68 -107.50 -0.50 36.38 16 27 O -0.93 -17.82 18.15 -57.71 -1.05 -18.86 16 28 O -0.91 -18.66 16.37 -59.59 -0.98 -19.63 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 1.15 7.57 -51.93 -0.39 0.76 16 32 H 0.05 0.63 6.42 -51.93 -0.33 0.30 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.02 0.39 7.77 -51.93 -0.40 -0.02 16 36 H 0.02 0.45 7.84 -51.93 -0.41 0.05 16 37 H 0.25 7.85 8.31 -40.82 -0.34 7.51 16 38 H 0.12 3.60 5.87 -51.93 -0.30 3.30 16 39 H 0.02 0.53 7.80 -51.93 -0.41 0.13 16 40 H 0.40 6.07 7.03 -40.82 -0.29 5.78 16 41 H 0.11 1.27 7.91 -51.93 -0.41 0.86 16 42 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.09 0.47 7.86 -51.93 -0.41 0.06 16 44 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.13 1.10 8.14 -51.93 -0.42 0.67 16 48 H 0.14 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 383.43 15.07 5.78 5.78 Total: -1.00 -39.79 383.43 -10.17 -49.96 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -7.93 Total: 5.45 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -0.28 Total: -8.92 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.26 Total: -56.23 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: -1.95 Total: -50.41 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.98 kcal Atomic # 16 Polarization: 36.88 SS G_CDS: -0.50 Total: 36.38 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.79 -10.17 -49.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974872855.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.953 kcal (2) G-P(sol) polarization free energy of solvation -39.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds