Wall clock time and date at job start Sat Apr 11 2020 07:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 110.78076 * 2 1 4 4 C 1.54424 * 110.72952 * 236.70843 * 2 1 3 5 5 N 1.47030 * 107.28020 * 263.84752 * 4 2 1 6 6 C 1.36933 * 125.64953 * 181.09576 * 5 4 2 7 7 H 1.08002 * 120.00088 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99849 * 179.97438 * 6 5 4 9 9 N 1.31620 * 120.00122 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99958 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46687 * 60.00398 * 10 8 6 12 12 H 1.48500 * 109.47067 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47311 * 300.00311 * 10 8 6 14 14 C 1.47433 * 108.69874 * 1.05594 * 5 4 2 15 15 C 1.54905 * 104.83202 * 335.87216 * 14 5 4 16 16 H 1.09004 * 110.99845 * 155.12033 * 15 14 5 17 17 N 1.46499 * 111.00756 * 278.93303 * 15 14 5 18 18 C 1.34777 * 120.00199 * 270.42520 * 17 15 14 19 19 O 1.21283 * 119.99750 * 359.97438 * 18 17 15 20 20 C 1.50702 * 119.99928 * 180.27479 * 18 17 15 21 21 C 1.52996 * 109.47159 * 179.72352 * 20 18 17 22 22 H 1.09005 * 110.28285 * 302.88391 * 21 20 18 23 23 C 1.54161 * 110.32001 * 180.66101 * 21 20 18 24 24 C 1.53873 * 108.70391 * 213.18699 * 23 21 20 25 25 C 1.55050 * 106.62400 * 47.18091 * 24 23 21 26 26 S 1.82915 * 110.31972 * 64.99523 * 21 20 18 27 27 O 1.42101 * 109.35721 * 234.42456 * 26 21 20 28 28 O 1.42098 * 109.35640 * 7.63135 * 26 21 20 29 29 H 1.08996 * 109.47324 * 296.76169 * 1 2 3 30 30 H 1.08997 * 109.46955 * 56.76278 * 1 2 3 31 31 H 1.09000 * 109.46587 * 176.76123 * 1 2 3 32 32 H 1.08993 * 109.47491 * 183.23705 * 3 2 1 33 33 H 1.08999 * 109.46708 * 303.24062 * 3 2 1 34 34 H 1.09004 * 109.47023 * 63.23375 * 3 2 1 35 35 H 1.08992 * 109.87924 * 144.42843 * 4 2 1 36 36 H 1.08998 * 109.87838 * 23.26261 * 4 2 1 37 37 H 0.97001 * 120.00189 * 179.97438 * 9 8 6 38 38 H 1.08998 * 110.36530 * 217.03194 * 14 5 4 39 39 H 1.09000 * 110.36294 * 94.71244 * 14 5 4 40 40 H 0.97000 * 119.99484 * 90.41617 * 17 15 14 41 41 H 1.09004 * 109.46965 * 299.72211 * 20 18 17 42 42 H 1.08994 * 109.46990 * 59.72065 * 20 18 17 43 43 H 1.08995 * 109.64824 * 333.03949 * 23 21 20 44 44 H 1.09000 * 109.64611 * 93.33838 * 23 21 20 45 45 H 1.09001 * 110.02982 * 287.89020 * 24 23 21 46 46 H 1.09006 * 110.06886 * 166.49420 * 24 23 21 47 47 H 1.09001 * 110.78742 * 199.29449 * 25 24 23 48 48 H 1.09002 * 110.95228 * 75.91313 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0766 -0.7928 -1.2072 5 7 2.3719 -2.1545 -0.7380 6 6 2.8949 -3.1652 -1.4996 7 1 3.1258 -2.9931 -2.5405 8 6 3.1283 -4.4111 -0.9337 9 7 2.8474 -4.6208 0.3350 10 14 3.8410 -5.7901 -1.9728 11 1 5.1686 -5.3797 -2.4966 12 1 3.9939 -7.0096 -1.1393 13 1 2.9279 -6.0771 -3.1082 14 6 2.0126 -2.2512 0.6886 15 6 2.0790 -0.7954 1.2138 16 1 1.4399 -0.6657 2.0872 17 7 3.4595 -0.4080 1.5145 18 6 3.9681 -0.6261 2.7434 19 8 3.2828 -1.1426 3.6005 20 6 5.3862 -0.2220 3.0546 21 6 5.7089 -0.5718 4.5086 22 1 5.0008 -0.0861 5.1802 23 6 7.1514 -0.1511 4.8530 24 6 7.7289 -1.1536 5.8676 25 6 7.4004 -2.5696 5.3281 26 16 5.6712 -2.3846 4.7493 27 8 4.7825 -2.7004 5.8122 28 8 5.5258 -3.0241 3.4887 29 1 -0.3634 0.4627 0.9175 30 1 -0.3633 0.5633 -0.8595 31 1 -0.3632 -1.0261 -0.0581 32 1 3.1610 1.4062 -0.0580 33 1 1.6750 1.9700 -0.8595 34 1 1.7690 1.9344 0.9176 35 1 2.9875 -0.3226 -1.5776 36 1 1.3270 -0.8276 -1.9978 37 1 3.0101 -5.4915 0.7303 38 1 2.7291 -2.8787 1.2186 39 1 1.0038 -2.6488 0.7995 40 1 4.0075 0.0053 0.8291 41 1 6.0693 -0.7544 2.3926 42 1 5.4990 0.8518 2.9055 43 1 7.7597 -0.1536 3.9486 44 1 7.1479 0.8487 5.2872 45 1 7.2633 -1.0083 6.8424 46 1 8.8084 -1.0255 5.9471 47 1 7.4647 -3.3114 6.1242 48 1 8.0592 -2.8341 4.5009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974872855.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:08:57 Heat of formation + Delta-G solvation = -112.785654 kcal Electronic energy + Delta-G solvation = -30482.465543 eV Core-core repulsion = 26471.076256 eV Total energy + Delta-G solvation = -4011.389287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.29299 -39.63434 -37.98062 -37.50283 -36.83132 -35.66932 -34.54898 -33.16826 -32.59898 -29.97781 -28.45346 -27.78511 -27.33161 -25.50217 -24.54238 -22.34601 -22.19674 -21.34035 -20.12387 -19.54670 -18.69616 -18.17755 -18.05091 -17.64309 -17.22726 -16.61538 -16.49044 -15.91052 -15.64447 -15.52899 -15.23877 -15.09781 -14.70944 -14.64052 -14.33455 -14.19209 -13.76011 -13.66043 -13.48570 -13.08418 -13.07570 -13.00730 -12.95901 -12.90579 -12.81269 -12.69093 -12.62174 -12.54637 -12.53378 -12.16823 -11.78939 -11.76507 -11.75678 -11.47180 -11.42954 -11.35349 -11.00067 -10.90470 -10.72325 -9.95411 -8.83793 -7.72759 -5.19045 -0.84419 1.41049 1.46144 1.53246 1.61355 1.80651 2.25182 2.49666 2.85856 3.00659 3.36379 3.46563 3.52819 3.57492 3.69320 3.75025 3.87553 3.97570 4.01346 4.08588 4.16626 4.30498 4.41848 4.51543 4.56566 4.58222 4.67663 4.75260 4.80345 4.83697 4.89229 4.92927 5.04120 5.05335 5.11063 5.13105 5.20571 5.22176 5.30937 5.34070 5.48988 5.54578 5.68971 5.86528 6.34007 6.59162 7.09051 7.29634 7.81519 8.45191 9.26802 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010471 B = 0.004616 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.415632 B = 6065.016121 C = 7867.451684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.122 4.122 4 C 0.138 3.862 5 N -0.617 5.617 6 C -0.237 4.237 7 H 0.088 0.912 8 C -0.071 4.071 9 N -0.946 5.946 10 Si 0.977 3.023 11 H -0.271 1.271 12 H -0.303 1.303 13 H -0.274 1.274 14 C 0.150 3.850 15 C 0.133 3.867 16 H 0.076 0.924 17 N -0.688 5.688 18 C 0.494 3.506 19 O -0.600 6.600 20 C -0.114 4.114 21 C -0.515 4.515 22 H 0.149 0.851 23 C -0.106 4.106 24 C -0.120 4.120 25 C -0.574 4.574 26 S 2.332 3.668 27 O -0.996 6.996 28 O -0.986 6.986 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.028 0.972 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.039 0.961 36 H 0.025 0.975 37 H 0.239 0.761 38 H 0.066 0.934 39 H -0.022 1.022 40 H 0.411 0.589 41 H 0.119 0.881 42 H 0.167 0.833 43 H 0.112 0.888 44 H 0.131 0.869 45 H 0.093 0.907 46 H 0.136 0.864 47 H 0.144 0.856 48 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.086 19.252 7.845 24.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.074 4.074 3 C -0.180 4.180 4 C 0.014 3.986 5 N -0.343 5.343 6 C -0.366 4.366 7 H 0.105 0.895 8 C -0.264 4.264 9 N -0.595 5.595 10 Si 0.806 3.194 11 H -0.196 1.196 12 H -0.230 1.230 13 H -0.199 1.199 14 C 0.024 3.976 15 C 0.026 3.974 16 H 0.094 0.906 17 N -0.338 5.338 18 C 0.282 3.718 19 O -0.483 6.483 20 C -0.154 4.154 21 C -0.629 4.629 22 H 0.167 0.833 23 C -0.145 4.145 24 C -0.159 4.159 25 C -0.707 4.707 26 S 2.523 3.477 27 O -0.993 6.993 28 O -0.983 6.983 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.049 0.951 38 H 0.084 0.916 39 H -0.005 1.005 40 H 0.249 0.751 41 H 0.137 0.863 42 H 0.185 0.815 43 H 0.130 0.870 44 H 0.149 0.851 45 H 0.112 0.888 46 H 0.154 0.846 47 H 0.162 0.838 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 11.889 17.991 8.267 23.095 hybrid contribution 0.200 -1.419 -0.547 1.534 sum 12.089 16.572 7.720 21.918 Atomic orbital electron populations 1.21693 0.92702 1.00997 1.03040 1.21865 0.96717 0.96319 0.92545 1.21683 1.01083 0.92058 1.03135 1.21680 0.97230 0.84672 0.95048 1.44661 1.73965 1.08439 1.07239 1.19391 1.33683 0.90017 0.93504 0.89470 1.25724 1.02906 1.00495 0.97281 1.70153 1.54793 1.21887 1.12654 0.85168 0.78805 0.78203 0.77269 1.19636 1.23011 1.19948 1.21955 0.96281 0.93738 0.85644 1.22167 0.82948 0.95220 0.97028 0.90560 1.45579 1.14165 1.61396 1.12641 1.21541 0.90702 0.77344 0.82227 1.90724 1.63253 1.45895 1.48417 1.21547 0.91596 1.08199 0.94082 1.29882 1.08325 1.20818 1.03834 0.83269 1.22237 0.87718 1.02487 1.02029 1.22423 1.06544 0.87247 0.99658 1.30594 1.19170 1.07843 1.13111 1.10533 0.80685 0.81754 0.74722 1.93481 1.64342 1.84173 1.57312 1.93626 1.86888 1.74512 1.43249 0.91315 0.89914 0.95268 0.91715 0.90342 0.91404 0.94276 0.95747 0.95134 0.91564 1.00464 0.75119 0.86266 0.81548 0.86962 0.85111 0.88827 0.84583 0.83771 0.82585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 8.41 71.98 0.61 -3.21 16 2 C -0.07 -2.38 0.81 -50.96 -0.04 -2.42 16 3 C -0.12 -2.66 8.08 71.98 0.58 -2.08 16 4 C 0.14 5.52 6.41 86.76 0.56 6.07 16 5 N -0.62 -32.94 3.40 -691.77 -2.35 -35.28 16 6 C -0.24 -13.85 10.27 84.03 0.86 -12.99 16 7 H 0.09 4.75 7.83 -2.91 -0.02 4.73 16 8 C -0.07 -4.39 5.49 84.86 0.47 -3.92 16 9 N -0.95 -63.85 10.09 21.65 0.22 -63.63 16 10 Si 0.98 49.17 29.55 68.60 2.03 51.20 16 11 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.30 -15.76 7.11 99.48 0.71 -15.05 16 13 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 14 C 0.15 8.37 5.27 86.85 0.46 8.83 16 15 C 0.13 5.50 2.61 46.38 0.12 5.62 16 16 H 0.08 3.30 7.53 -2.38 -0.02 3.29 16 17 N -0.69 -24.38 4.62 -435.97 -2.01 -26.39 16 18 C 0.49 18.01 6.97 87.66 0.61 18.62 16 19 O -0.60 -28.13 14.46 -2.71 -0.04 -28.17 16 20 C -0.11 -2.50 4.74 29.85 0.14 -2.36 16 21 C -0.52 -10.56 2.80 30.99 0.09 -10.47 16 22 H 0.15 3.06 8.04 -2.38 -0.02 3.05 16 23 C -0.11 -0.85 5.94 31.28 0.19 -0.66 16 24 C -0.12 -1.02 6.48 31.59 0.20 -0.82 16 25 C -0.57 -9.61 7.31 72.68 0.53 -9.08 16 26 S 2.33 76.41 4.68 -56.49 -0.26 76.15 16 27 O -1.00 -42.60 18.15 -127.49 -2.31 -44.91 16 28 O -0.99 -44.93 16.37 -125.69 -2.06 -46.99 16 29 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 31 H 0.03 1.06 7.57 -2.39 -0.02 1.05 16 32 H 0.06 1.26 6.42 -2.39 -0.02 1.25 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.04 1.43 7.77 -2.39 -0.02 1.41 16 36 H 0.02 0.98 7.84 -2.39 -0.02 0.96 16 37 H 0.24 16.14 8.31 -92.71 -0.77 15.37 16 38 H 0.07 4.44 5.87 -2.39 -0.01 4.43 16 39 H -0.02 -1.38 7.80 -2.39 -0.02 -1.40 16 40 H 0.41 11.84 7.03 -92.71 -0.65 11.19 16 41 H 0.12 2.49 7.91 -2.38 -0.02 2.48 16 42 H 0.17 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.11 0.44 7.86 -2.39 -0.02 0.42 16 44 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 45 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.14 0.29 8.14 -2.38 -0.02 0.27 16 47 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.16 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -103.41 383.43 -1.12 -104.53 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.30 Total: 22.38 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 5.37 Total: -8.87 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -4.14 Total: -125.31 kcal Atomic # 8 Polarization: -115.67 SS G_CDS: -4.41 Total: -120.08 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 2.03 Total: 51.20 kcal Atomic # 16 Polarization: 76.41 SS G_CDS: -0.26 Total: 76.15 kcal Total: -103.41 -1.12 -104.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974872855.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.258 kcal (2) G-P(sol) polarization free energy of solvation -103.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds