Wall clock time and date at job start Sat Apr 11 2020 07:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 110.91920 * 2 1 4 4 C 1.54910 * 111.00029 * 236.09712 * 2 1 3 5 5 N 1.47425 * 104.83011 * 204.91758 * 4 2 1 6 6 C 1.36943 * 125.64720 * 204.16524 * 5 4 2 7 7 H 1.08004 * 119.99995 * 354.83730 * 6 5 4 8 8 C 1.38807 * 119.99932 * 174.83527 * 6 5 4 9 9 N 1.31622 * 120.00366 * 7.06800 * 8 6 5 10 10 Si 1.86803 * 119.99893 * 187.06331 * 8 6 5 11 11 H 1.48502 * 109.46916 * 94.99074 * 10 8 6 12 12 H 1.48505 * 109.46982 * 214.98926 * 10 8 6 13 13 H 1.48496 * 109.47434 * 334.98738 * 10 8 6 14 14 C 1.47015 * 108.70593 * 24.12783 * 5 4 2 15 15 C 1.54325 * 107.27198 * 358.94457 * 14 5 4 16 16 H 1.09001 * 110.72118 * 219.26755 * 15 14 5 17 17 N 1.46493 * 110.72421 * 96.16662 * 15 14 5 18 18 C 1.34781 * 120.00177 * 86.45244 * 17 15 14 19 19 O 1.21277 * 119.99551 * 0.02562 * 18 17 15 20 20 C 1.50704 * 119.99970 * 180.02562 * 18 17 15 21 21 C 1.53001 * 109.46758 * 180.02562 * 20 18 17 22 22 H 1.09002 * 110.84961 * 308.42648 * 21 20 18 23 23 C 1.55044 * 110.78646 * 185.00215 * 21 20 18 24 24 C 1.53886 * 106.66009 * 199.32019 * 23 21 20 25 25 C 1.54160 * 108.70612 * 47.15765 * 24 23 21 26 26 S 1.82919 * 105.08587 * 332.08975 * 25 24 23 27 27 O 1.42099 * 109.35631 * 115.52414 * 26 25 24 28 28 O 1.42103 * 109.35382 * 248.72607 * 26 25 24 29 29 H 1.09000 * 109.47152 * 296.09833 * 1 2 3 30 30 H 1.08996 * 109.47530 * 56.09606 * 1 2 3 31 31 H 1.08998 * 109.47708 * 176.09768 * 1 2 3 32 32 H 1.08995 * 109.47012 * 183.90459 * 3 2 1 33 33 H 1.09005 * 109.46777 * 303.90581 * 3 2 1 34 34 H 1.09002 * 109.46773 * 63.89883 * 3 2 1 35 35 H 1.09003 * 110.36563 * 86.07978 * 4 2 1 36 36 H 1.09002 * 110.46091 * 323.80339 * 4 2 1 37 37 H 0.96998 * 120.00149 * 179.97438 * 9 8 6 38 38 H 1.08994 * 109.88568 * 239.52206 * 14 5 4 39 39 H 1.09005 * 109.88012 * 118.35612 * 14 5 4 40 40 H 0.97001 * 119.99991 * 266.45917 * 17 15 14 41 41 H 1.09001 * 109.46959 * 60.00293 * 20 18 17 42 42 H 1.08997 * 109.47196 * 300.00177 * 20 18 17 43 43 H 1.08992 * 110.03158 * 80.00513 * 23 21 20 44 44 H 1.09000 * 110.02915 * 318.62742 * 23 21 20 45 45 H 1.09001 * 109.64162 * 167.00812 * 24 23 21 46 46 H 1.08999 * 109.64346 * 287.43253 * 24 23 21 47 47 H 1.09001 * 110.32024 * 90.99247 * 25 24 23 48 48 H 1.09004 * 110.31719 * 213.08970 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4291 0.0000 4 6 2.0851 -0.8067 -1.2003 5 7 3.4270 -1.2432 -0.7734 6 6 4.4643 -1.5655 -1.6073 7 1 4.3103 -1.5906 -2.6760 8 6 5.7137 -1.8599 -1.0790 9 7 5.8691 -1.9661 0.2237 10 14 7.1746 -2.1057 -2.2170 11 1 7.9220 -0.8290 -2.3457 12 1 8.0698 -3.1489 -1.6550 13 1 6.6934 -2.5347 -3.5547 14 6 3.4674 -1.2742 0.6959 15 6 2.0861 -0.8080 1.2022 16 1 2.1920 -0.1725 2.0815 17 7 1.2268 -1.9574 1.4962 18 6 1.2806 -2.5469 2.7070 19 8 2.0403 -2.1255 3.5533 20 6 0.3970 -3.7297 3.0092 21 6 0.6525 -4.2045 4.4411 22 1 1.7174 -4.3601 4.6141 23 6 -0.1488 -5.4969 4.7435 24 6 -0.2308 -5.6169 6.2755 25 6 -0.6478 -4.2513 6.8567 26 16 -0.0364 -3.0155 5.6547 27 8 -1.1414 -2.3373 5.0731 28 8 1.0238 -2.2727 6.2410 29 1 -0.3633 0.4521 0.9229 30 1 -0.3634 0.5732 -0.8529 31 1 -0.3634 -1.0252 -0.0699 32 1 3.1636 1.4024 -0.0700 33 1 1.6705 1.9732 -0.8530 34 1 1.7836 1.9299 0.9229 35 1 2.1558 -0.1720 -2.0837 36 1 1.4523 -1.6704 -1.4043 37 1 6.7421 -2.1722 0.5928 38 1 4.2426 -0.5999 1.0598 39 1 3.6649 -2.2895 1.0399 40 1 0.6190 -2.2943 0.8194 41 1 0.6208 -4.5378 2.3128 42 1 -0.6482 -3.4387 2.9043 43 1 0.3679 -6.3622 4.3285 44 1 -1.1508 -5.4225 4.3208 45 1 -0.9703 -6.3710 6.5449 46 1 0.7435 -5.9003 6.6735 47 1 -1.7329 -4.1916 6.9421 48 1 -0.1831 -4.0965 7.8305 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974872867.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:09:02 Heat of formation + Delta-G solvation = -83.746430 kcal Electronic energy + Delta-G solvation = -29906.345979 eV Core-core repulsion = 25896.215927 eV Total energy + Delta-G solvation = -4010.130051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -39.89147 -38.16223 -37.05696 -36.71203 -35.88671 -33.87375 -33.01772 -32.40035 -30.68389 -28.45813 -27.40827 -26.60373 -25.60663 -24.44331 -23.13528 -21.61650 -20.57613 -19.83509 -18.85511 -18.57625 -17.34802 -16.84741 -16.60301 -16.58264 -15.88842 -15.54502 -15.00395 -14.70875 -14.44380 -14.23836 -14.01527 -13.89267 -13.80096 -13.43748 -13.20051 -12.77852 -12.50648 -12.23522 -12.16568 -12.11314 -12.01992 -11.94970 -11.93244 -11.77404 -11.61065 -11.33538 -11.29207 -11.03612 -10.98446 -10.77199 -10.73367 -10.36842 -10.23299 -10.19387 -9.96703 -9.85752 -9.64818 -9.51902 -8.59007 -8.44005 -6.80258 -5.68208 -3.02034 -0.03874 2.51337 2.91166 3.37547 3.41561 3.46486 3.48935 3.51090 3.89496 4.13775 4.24224 4.39130 4.48079 4.51866 4.63289 4.87497 4.96366 5.07928 5.09914 5.23305 5.31399 5.32981 5.34189 5.48238 5.48987 5.54199 5.55725 5.67087 5.71341 5.84180 5.96350 6.06893 6.20662 6.24288 6.28592 6.42337 6.61802 6.63966 6.70713 6.76049 6.98208 7.59025 7.65019 7.82778 7.92745 8.27898 8.54998 9.23808 9.84830 10.50943 11.42661 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014827 B = 0.003244 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.056210 B = 8628.978560 C = 9657.119345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.089 4.089 3 C -0.126 4.126 4 C 0.144 3.856 5 N -0.603 5.603 6 C -0.231 4.231 7 H 0.077 0.923 8 C -0.005 4.005 9 N -0.916 5.916 10 Si 0.908 3.092 11 H -0.289 1.289 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.175 3.825 15 C 0.122 3.878 16 H 0.089 0.911 17 N -0.704 5.704 18 C 0.496 3.504 19 O -0.532 6.532 20 C -0.122 4.122 21 C -0.531 4.531 22 H 0.155 0.845 23 C -0.120 4.120 24 C -0.113 4.113 25 C -0.608 4.608 26 S 2.389 3.611 27 O -0.938 6.938 28 O -0.914 6.914 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.041 0.959 36 H 0.015 0.985 37 H 0.253 0.747 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.396 0.604 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.085 0.915 47 H 0.133 0.867 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.704 -6.797 9.384 21.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.091 4.091 3 C -0.184 4.184 4 C 0.018 3.982 5 N -0.329 5.329 6 C -0.360 4.360 7 H 0.095 0.905 8 C -0.202 4.202 9 N -0.562 5.562 10 Si 0.739 3.261 11 H -0.216 1.216 12 H -0.219 1.219 13 H -0.207 1.207 14 C 0.050 3.950 15 C 0.017 3.983 16 H 0.107 0.893 17 N -0.355 5.355 18 C 0.281 3.719 19 O -0.409 6.409 20 C -0.163 4.163 21 C -0.641 4.641 22 H 0.173 0.827 23 C -0.159 4.159 24 C -0.151 4.151 25 C -0.737 4.737 26 S 2.570 3.430 27 O -0.935 6.935 28 O -0.911 6.911 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.032 0.968 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.232 0.768 41 H 0.133 0.867 42 H 0.128 0.872 43 H 0.119 0.881 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.152 0.848 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.945 -5.562 10.032 20.462 hybrid contribution 0.633 -1.309 -0.874 1.696 sum -16.312 -6.871 9.158 19.929 Atomic orbital electron populations 1.21693 0.94686 1.01094 1.01547 1.22010 0.94475 0.96113 0.96483 1.21599 1.02517 0.93679 1.00575 1.21630 0.87775 0.94460 0.94348 1.44450 1.07869 1.78793 1.01828 1.19016 0.87481 1.40384 0.89069 0.90504 1.24828 0.97552 1.01916 0.95918 1.69984 1.22569 1.54221 1.09467 0.86159 0.82963 0.77394 0.79582 1.21628 1.21860 1.20737 1.21522 0.89728 1.00440 0.83325 1.22534 0.92377 0.86211 0.97182 0.89318 1.45944 1.42516 1.32972 1.14029 1.20510 0.83869 0.84511 0.83039 1.90843 1.39338 1.64410 1.46343 1.21363 1.01752 0.98443 0.94782 1.30229 1.12253 1.12027 1.09630 0.82749 1.22357 1.00865 0.97158 0.95517 1.21876 1.03908 0.95134 0.94225 1.30664 1.12412 1.14118 1.16473 1.09348 0.76477 0.78277 0.78902 1.93579 1.52754 1.70591 1.76562 1.93645 1.54442 1.67240 1.75762 0.92654 0.92585 0.93055 0.91177 0.92863 0.93271 0.94076 0.96780 0.93681 0.92636 0.93543 0.76839 0.86695 0.87199 0.88105 0.89396 0.89069 0.89597 0.84843 0.84601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 8.22 37.16 0.31 -1.45 16 2 C -0.09 -1.51 0.83 -152.36 -0.13 -1.64 16 3 C -0.13 -2.08 8.57 37.16 0.32 -1.76 16 4 C 0.14 2.85 6.14 -2.53 -0.02 2.84 16 5 N -0.60 -15.06 3.38 -170.07 -0.57 -15.63 16 6 C -0.23 -6.39 10.27 -15.06 -0.15 -6.55 16 7 H 0.08 2.05 7.84 -52.48 -0.41 1.64 16 8 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 9 N -0.92 -27.41 10.36 55.49 0.57 -26.84 16 10 Si 0.91 22.24 29.56 -169.99 -5.02 17.21 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.18 4.35 4.80 -3.07 -0.01 4.33 16 15 C 0.12 2.38 2.51 -66.10 -0.17 2.21 16 16 H 0.09 1.84 7.60 -51.93 -0.39 1.45 16 17 N -0.70 -11.74 4.57 -52.03 -0.24 -11.98 16 18 C 0.50 8.41 7.65 -10.98 -0.08 8.32 16 19 O -0.53 -11.25 14.46 1.04 0.02 -11.23 16 20 C -0.12 -1.38 5.09 -27.88 -0.14 -1.53 16 21 C -0.53 -5.47 2.68 -25.65 -0.07 -5.54 16 22 H 0.15 1.72 7.88 -51.93 -0.41 1.31 16 23 C -0.12 -0.72 5.90 -25.19 -0.15 -0.87 16 24 C -0.11 -0.61 6.40 -25.66 -0.16 -0.77 16 25 C -0.61 -4.22 7.26 37.76 0.27 -3.94 16 26 S 2.39 29.16 5.10 -107.50 -0.55 28.61 16 27 O -0.94 -13.59 17.16 -57.71 -0.99 -14.58 16 28 O -0.91 -15.70 17.52 -61.37 -1.08 -16.77 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.61 6.38 -51.93 -0.33 0.28 16 32 H 0.07 1.36 7.91 -51.93 -0.41 0.95 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.04 0.81 8.05 -51.93 -0.42 0.39 16 36 H 0.01 0.28 7.99 -51.93 -0.41 -0.14 16 37 H 0.25 7.41 8.31 -40.82 -0.34 7.08 16 38 H 0.06 1.57 7.30 -51.93 -0.38 1.19 16 39 H 0.05 1.31 7.51 -51.93 -0.39 0.92 16 40 H 0.40 5.47 6.90 -40.82 -0.28 5.19 16 41 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.11 1.02 7.47 -51.93 -0.39 0.63 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.39 8.08 -51.93 -0.42 -0.03 16 45 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.13 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.14 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 385.88 15.07 5.82 5.82 Total: -1.00 -38.18 385.88 -10.34 -48.52 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -8.01 Total: 3.46 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -0.28 Total: -6.59 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.24 Total: -54.45 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -2.05 Total: -42.58 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: 29.16 SS G_CDS: -0.55 Total: 28.61 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.18 -10.34 -48.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974872867.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.229 kcal (2) G-P(sol) polarization free energy of solvation -38.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds