Wall clock time and date at job start Sat Apr 11 2020 07:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 110.91920 * 2 1 4 4 C 1.54910 * 111.00029 * 236.09712 * 2 1 3 5 5 N 1.47425 * 104.83011 * 204.91758 * 4 2 1 6 6 C 1.36943 * 125.64720 * 204.16524 * 5 4 2 7 7 H 1.08004 * 119.99995 * 354.83730 * 6 5 4 8 8 C 1.38807 * 119.99932 * 174.83527 * 6 5 4 9 9 N 1.31622 * 120.00366 * 7.06800 * 8 6 5 10 10 Si 1.86803 * 119.99893 * 187.06331 * 8 6 5 11 11 H 1.48502 * 109.46916 * 94.99074 * 10 8 6 12 12 H 1.48505 * 109.46982 * 214.98926 * 10 8 6 13 13 H 1.48496 * 109.47434 * 334.98738 * 10 8 6 14 14 C 1.47015 * 108.70593 * 24.12783 * 5 4 2 15 15 C 1.54325 * 107.27198 * 358.94457 * 14 5 4 16 16 H 1.09001 * 110.72118 * 219.26755 * 15 14 5 17 17 N 1.46493 * 110.72421 * 96.16662 * 15 14 5 18 18 C 1.34781 * 120.00177 * 86.45244 * 17 15 14 19 19 O 1.21277 * 119.99551 * 0.02562 * 18 17 15 20 20 C 1.50704 * 119.99970 * 180.02562 * 18 17 15 21 21 C 1.53001 * 109.46758 * 180.02562 * 20 18 17 22 22 H 1.09002 * 110.84961 * 308.42648 * 21 20 18 23 23 C 1.55044 * 110.78646 * 185.00215 * 21 20 18 24 24 C 1.53886 * 106.66009 * 199.32019 * 23 21 20 25 25 C 1.54160 * 108.70612 * 47.15765 * 24 23 21 26 26 S 1.82919 * 105.08587 * 332.08975 * 25 24 23 27 27 O 1.42099 * 109.35631 * 115.52414 * 26 25 24 28 28 O 1.42103 * 109.35382 * 248.72607 * 26 25 24 29 29 H 1.09000 * 109.47152 * 296.09833 * 1 2 3 30 30 H 1.08996 * 109.47530 * 56.09606 * 1 2 3 31 31 H 1.08998 * 109.47708 * 176.09768 * 1 2 3 32 32 H 1.08995 * 109.47012 * 183.90459 * 3 2 1 33 33 H 1.09005 * 109.46777 * 303.90581 * 3 2 1 34 34 H 1.09002 * 109.46773 * 63.89883 * 3 2 1 35 35 H 1.09003 * 110.36563 * 86.07978 * 4 2 1 36 36 H 1.09002 * 110.46091 * 323.80339 * 4 2 1 37 37 H 0.96998 * 120.00149 * 179.97438 * 9 8 6 38 38 H 1.08994 * 109.88568 * 239.52206 * 14 5 4 39 39 H 1.09005 * 109.88012 * 118.35612 * 14 5 4 40 40 H 0.97001 * 119.99991 * 266.45917 * 17 15 14 41 41 H 1.09001 * 109.46959 * 60.00293 * 20 18 17 42 42 H 1.08997 * 109.47196 * 300.00177 * 20 18 17 43 43 H 1.08992 * 110.03158 * 80.00513 * 23 21 20 44 44 H 1.09000 * 110.02915 * 318.62742 * 23 21 20 45 45 H 1.09001 * 109.64162 * 167.00812 * 24 23 21 46 46 H 1.08999 * 109.64346 * 287.43253 * 24 23 21 47 47 H 1.09001 * 110.32024 * 90.99247 * 25 24 23 48 48 H 1.09004 * 110.31719 * 213.08970 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4291 0.0000 4 6 2.0851 -0.8067 -1.2003 5 7 3.4270 -1.2432 -0.7734 6 6 4.4643 -1.5655 -1.6073 7 1 4.3103 -1.5906 -2.6760 8 6 5.7137 -1.8599 -1.0790 9 7 5.8691 -1.9661 0.2237 10 14 7.1746 -2.1057 -2.2170 11 1 7.9220 -0.8290 -2.3457 12 1 8.0698 -3.1489 -1.6550 13 1 6.6934 -2.5347 -3.5547 14 6 3.4674 -1.2742 0.6959 15 6 2.0861 -0.8080 1.2022 16 1 2.1920 -0.1725 2.0815 17 7 1.2268 -1.9574 1.4962 18 6 1.2806 -2.5469 2.7070 19 8 2.0403 -2.1255 3.5533 20 6 0.3970 -3.7297 3.0092 21 6 0.6525 -4.2045 4.4411 22 1 1.7174 -4.3601 4.6141 23 6 -0.1488 -5.4969 4.7435 24 6 -0.2308 -5.6169 6.2755 25 6 -0.6478 -4.2513 6.8567 26 16 -0.0364 -3.0155 5.6547 27 8 -1.1414 -2.3373 5.0731 28 8 1.0238 -2.2727 6.2410 29 1 -0.3633 0.4521 0.9229 30 1 -0.3634 0.5732 -0.8529 31 1 -0.3634 -1.0252 -0.0699 32 1 3.1636 1.4024 -0.0700 33 1 1.6705 1.9732 -0.8530 34 1 1.7836 1.9299 0.9229 35 1 2.1558 -0.1720 -2.0837 36 1 1.4523 -1.6704 -1.4043 37 1 6.7421 -2.1722 0.5928 38 1 4.2426 -0.5999 1.0598 39 1 3.6649 -2.2895 1.0399 40 1 0.6190 -2.2943 0.8194 41 1 0.6208 -4.5378 2.3128 42 1 -0.6482 -3.4387 2.9043 43 1 0.3679 -6.3622 4.3285 44 1 -1.1508 -5.4225 4.3208 45 1 -0.9703 -6.3710 6.5449 46 1 0.7435 -5.9003 6.6735 47 1 -1.7329 -4.1916 6.9421 48 1 -0.1831 -4.0965 7.8305 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974872867.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:09:01 Heat of formation + Delta-G solvation = -113.833528 kcal Electronic energy + Delta-G solvation = -29907.650653 eV Core-core repulsion = 25896.215927 eV Total energy + Delta-G solvation = -4011.434726 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.34994 -39.64150 -38.05396 -37.42356 -36.89018 -35.71924 -34.54430 -33.24938 -32.62676 -29.99175 -28.44430 -27.84488 -27.36279 -25.55515 -24.58589 -22.36563 -22.10966 -21.39470 -20.20008 -19.62962 -18.69059 -18.28628 -17.93870 -17.57242 -17.12230 -16.78033 -16.50078 -16.03192 -15.71888 -15.48955 -15.27846 -15.21155 -14.83740 -14.74010 -14.30312 -14.08558 -13.80799 -13.52483 -13.43740 -13.15667 -13.12391 -13.01286 -13.00088 -12.92121 -12.79586 -12.75602 -12.71907 -12.60560 -12.54635 -12.10292 -11.87171 -11.77470 -11.72746 -11.53595 -11.50481 -11.33084 -11.06560 -10.86458 -10.71640 -10.01819 -8.89640 -7.85022 -5.20846 -0.87208 1.43220 1.46030 1.54670 1.57872 1.70741 2.15553 2.48654 2.72980 3.04841 3.33163 3.38326 3.48375 3.55248 3.68888 3.74123 3.90874 3.94712 3.99009 4.06216 4.15457 4.23841 4.38235 4.48643 4.51522 4.60408 4.68809 4.76188 4.81940 4.83192 4.88074 4.94100 5.03704 5.06693 5.11849 5.13241 5.14966 5.21694 5.29970 5.34862 5.46059 5.54743 5.69962 5.73163 6.16756 6.53229 7.06878 7.24732 7.77147 8.42350 9.24796 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014827 B = 0.003244 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.056210 B = 8628.978560 C = 9657.119345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 C -0.125 4.125 4 C 0.140 3.860 5 N -0.620 5.620 6 C -0.237 4.237 7 H 0.089 0.911 8 C -0.069 4.069 9 N -0.953 5.953 10 Si 0.977 3.023 11 H -0.290 1.290 12 H -0.299 1.299 13 H -0.262 1.262 14 C 0.195 3.805 15 C 0.132 3.868 16 H 0.068 0.932 17 N -0.697 5.697 18 C 0.481 3.519 19 O -0.583 6.583 20 C -0.117 4.117 21 C -0.526 4.526 22 H 0.137 0.863 23 C -0.113 4.113 24 C -0.116 4.116 25 C -0.570 4.570 26 S 2.349 3.651 27 O -0.974 6.974 28 O -0.988 6.988 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.029 0.971 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.036 0.964 37 H 0.243 0.757 38 H 0.003 0.997 39 H 0.001 0.999 40 H 0.414 0.586 41 H 0.147 0.853 42 H 0.138 0.862 43 H 0.122 0.878 44 H 0.114 0.886 45 H 0.128 0.872 46 H 0.090 0.910 47 H 0.162 0.838 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.415 -9.167 8.156 24.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.077 4.077 3 C -0.182 4.182 4 C 0.015 3.985 5 N -0.346 5.346 6 C -0.366 4.366 7 H 0.106 0.894 8 C -0.261 4.261 9 N -0.602 5.602 10 Si 0.805 3.195 11 H -0.217 1.217 12 H -0.226 1.226 13 H -0.186 1.186 14 C 0.069 3.931 15 C 0.026 3.974 16 H 0.086 0.914 17 N -0.348 5.348 18 C 0.268 3.732 19 O -0.464 6.464 20 C -0.157 4.157 21 C -0.639 4.639 22 H 0.155 0.845 23 C -0.152 4.152 24 C -0.154 4.154 25 C -0.704 4.704 26 S 2.539 3.461 27 O -0.971 6.971 28 O -0.985 6.985 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.021 0.979 39 H 0.019 0.981 40 H 0.252 0.748 41 H 0.164 0.836 42 H 0.156 0.844 43 H 0.140 0.860 44 H 0.132 0.868 45 H 0.146 0.854 46 H 0.109 0.891 47 H 0.180 0.820 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -20.715 -7.883 8.732 23.823 hybrid contribution 1.759 -0.627 -0.467 1.925 sum -18.956 -8.510 8.266 22.362 Atomic orbital electron populations 1.21673 0.90732 1.02928 1.02983 1.21997 0.97368 0.95205 0.93152 1.21599 0.99984 0.94126 1.02509 1.21889 0.85460 0.95525 0.95584 1.44686 1.09595 1.78725 1.01597 1.19486 0.88346 1.38820 0.89955 0.89370 1.25701 1.00496 1.02708 0.97237 1.70259 1.22320 1.56087 1.11540 0.85082 0.79242 0.76769 0.78394 1.21746 1.22601 1.18596 1.21044 0.91714 0.96580 0.83787 1.22087 0.90611 0.87319 0.97366 0.91414 1.45805 1.42034 1.32228 1.14782 1.21703 0.83800 0.85461 0.82199 1.90832 1.41695 1.66033 1.47829 1.21510 1.01653 0.96455 0.96105 1.30116 1.11956 1.13651 1.08135 0.84495 1.22516 1.01554 0.94864 0.96251 1.22075 1.05457 0.94408 0.93508 1.30393 1.13816 1.11891 1.14262 1.10059 0.75619 0.80068 0.80397 1.93514 1.52787 1.73022 1.77767 1.93555 1.56792 1.70921 1.77245 0.92182 0.90041 0.91249 0.95198 0.90022 0.92082 0.93241 0.94627 0.94777 0.97925 0.98064 0.74797 0.83564 0.84367 0.85965 0.86796 0.85394 0.89082 0.82046 0.83372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.22 71.98 0.59 -2.32 16 2 C -0.08 -2.50 0.83 -50.79 -0.04 -2.55 16 3 C -0.12 -4.08 8.57 71.98 0.62 -3.47 16 4 C 0.14 5.37 6.14 86.86 0.53 5.90 16 5 N -0.62 -31.85 3.38 -691.99 -2.34 -34.18 16 6 C -0.24 -13.36 10.27 84.03 0.86 -12.49 16 7 H 0.09 4.66 7.84 -2.91 -0.02 4.64 16 8 C -0.07 -4.03 5.48 84.86 0.46 -3.56 16 9 N -0.95 -60.78 10.36 21.65 0.22 -60.55 16 10 Si 0.98 46.98 29.56 68.60 2.03 49.01 16 11 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 12 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 13 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 14 C 0.20 10.40 4.80 86.73 0.42 10.82 16 15 C 0.13 5.42 2.51 46.18 0.12 5.54 16 16 H 0.07 3.05 7.60 -2.39 -0.02 3.04 16 17 N -0.70 -23.38 4.57 -436.91 -2.00 -25.38 16 18 C 0.48 16.82 7.65 87.66 0.67 17.49 16 19 O -0.58 -26.75 14.46 1.30 0.02 -26.74 16 20 C -0.12 -2.47 5.09 29.85 0.15 -2.31 16 21 C -0.53 -10.33 2.68 31.29 0.08 -10.25 16 22 H 0.14 3.20 7.88 -2.39 -0.02 3.18 16 23 C -0.11 -0.88 5.90 31.59 0.19 -0.70 16 24 C -0.12 -0.72 6.40 31.29 0.20 -0.52 16 25 C -0.57 -6.20 7.26 72.37 0.53 -5.67 16 26 S 2.35 58.36 5.10 -56.49 -0.29 58.07 16 27 O -0.97 -28.46 17.16 -127.49 -2.19 -30.64 16 28 O -0.99 -37.18 17.52 -123.99 -2.17 -39.35 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.37 6.38 -2.39 -0.02 1.35 16 32 H 0.03 1.20 7.91 -2.39 -0.02 1.18 16 33 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.05 1.83 8.05 -2.39 -0.02 1.81 16 36 H 0.04 1.25 7.99 -2.39 -0.02 1.23 16 37 H 0.24 15.24 8.31 -92.71 -0.77 14.47 16 38 H 0.00 0.16 7.30 -2.39 -0.02 0.14 16 39 H 0.00 0.07 7.51 -2.38 -0.02 0.05 16 40 H 0.41 10.66 6.90 -92.71 -0.64 10.02 16 41 H 0.15 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.14 2.16 7.47 -2.39 -0.02 2.14 16 43 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.11 0.38 8.08 -2.39 -0.02 0.36 16 45 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 46 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.16 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.15 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -94.73 385.88 -1.02 -95.76 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.31 Total: 18.11 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 5.38 Total: -4.10 kcal Atomic # 7 Polarization: -116.01 SS G_CDS: -4.11 Total: -120.12 kcal Atomic # 8 Polarization: -92.39 SS G_CDS: -4.34 Total: -96.73 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Atomic # 16 Polarization: 58.36 SS G_CDS: -0.29 Total: 58.07 kcal Total: -94.73 -1.02 -95.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974872867.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.078 kcal (2) G-P(sol) polarization free energy of solvation -94.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds