Wall clock time and date at job start Sat Apr 11 2020 07:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 110.91738 * 2 1 4 4 C 1.55389 * 111.18806 * 235.94209 * 2 1 3 5 5 N 1.47424 * 104.87305 * 204.97789 * 4 2 1 6 6 C 1.36940 * 125.64965 * 204.16094 * 5 4 2 7 7 H 1.07998 * 120.00036 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00021 * 179.97438 * 6 5 4 9 9 N 1.31620 * 120.00111 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99843 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.47104 * 90.00617 * 10 8 6 12 12 H 1.48500 * 109.46961 * 210.00072 * 10 8 6 13 13 H 1.48503 * 109.47331 * 330.00618 * 10 8 6 14 14 C 1.47021 * 108.70508 * 24.13611 * 5 4 2 15 15 C 1.54329 * 107.26985 * 358.93666 * 14 5 4 16 16 H 1.08991 * 110.72107 * 219.26840 * 15 14 5 17 17 N 1.46500 * 110.72023 * 96.17207 * 15 14 5 18 18 C 1.34777 * 120.00231 * 88.84109 * 17 15 14 19 19 O 1.21572 * 119.99280 * 0.02562 * 18 17 15 20 20 C 1.47741 * 120.00197 * 179.97438 * 18 17 15 21 21 C 1.41115 * 126.30394 * 180.02562 * 20 18 17 22 22 C 1.36997 * 105.42482 * 179.73571 * 21 20 18 23 23 C 1.47326 * 126.63829 * 180.02562 * 22 21 20 24 24 C 1.36152 * 125.95045 * 179.71191 * 23 22 21 25 25 C 1.40875 * 106.72531 * 179.85429 * 24 23 22 26 26 C 1.34765 * 107.05997 * 0.41146 * 25 24 23 27 27 O 1.34321 * 108.70184 * 359.74787 * 26 25 24 28 28 N 1.36554 * 106.72888 * 359.97438 * 22 21 20 29 29 H 0.97001 * 125.03000 * 179.97438 * 28 22 21 30 30 N 1.28455 * 109.94413 * 359.97438 * 28 22 21 31 31 H 1.09001 * 109.47146 * 296.09640 * 1 2 3 32 32 H 1.09005 * 109.47081 * 56.09928 * 1 2 3 33 33 H 1.09000 * 109.46959 * 176.09656 * 1 2 3 34 34 H 1.08997 * 109.47420 * 183.90434 * 3 2 1 35 35 H 1.09004 * 109.47400 * 303.90302 * 3 2 1 36 36 H 1.09004 * 109.47128 * 63.89972 * 3 2 1 37 37 H 1.09000 * 110.34473 * 86.12970 * 4 2 1 38 38 H 1.09001 * 110.44426 * 323.88315 * 4 2 1 39 39 H 0.96999 * 119.99630 * 179.97438 * 9 8 6 40 40 H 1.08998 * 109.88008 * 239.52363 * 14 5 4 41 41 H 1.08993 * 109.88529 * 118.35081 * 14 5 4 42 42 H 0.96998 * 119.99887 * 268.84124 * 17 15 14 43 43 H 1.08003 * 127.28323 * 359.70959 * 21 20 18 44 44 H 1.07990 * 126.63585 * 0.02562 * 24 23 22 45 45 H 1.08004 * 126.46872 * 180.15435 * 25 24 23 46 46 H 1.08001 * 125.64801 * 179.74135 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0916 -0.8114 -1.2003 5 7 3.4326 -1.2460 -0.7689 6 6 4.4724 -1.5694 -1.5994 7 1 4.3446 -1.5164 -2.6705 8 6 5.6906 -1.9653 -1.0645 9 7 5.8462 -2.0304 0.2408 10 14 7.1091 -2.4057 -2.1974 11 1 7.9116 -1.1889 -2.4818 12 1 7.9688 -3.4234 -1.5414 13 1 6.5746 -2.9547 -3.4695 14 6 3.4691 -1.2742 0.7005 15 6 2.0861 -0.8079 1.2022 16 1 2.1892 -0.1708 2.0804 17 7 1.2268 -1.9574 1.4962 18 6 1.2427 -2.5144 2.7234 19 8 1.9699 -2.0625 3.5865 20 6 0.3756 -3.6733 3.0200 21 6 0.2858 -4.3560 4.2517 22 6 -0.6418 -5.3445 4.0536 23 6 -1.0947 -6.3365 5.0443 24 6 -2.0224 -7.3104 4.8336 25 6 -2.1418 -8.0248 6.0419 26 6 -1.2981 -7.4535 6.9240 27 8 -0.6672 -6.4341 6.3183 28 7 -1.0663 -5.2318 2.7607 29 1 -1.7264 -5.8043 2.3395 30 7 -0.4620 -4.2556 2.1846 31 1 -0.3633 0.4521 0.9229 32 1 -0.3633 0.5732 -0.8530 33 1 -0.3633 -1.0253 -0.0700 34 1 3.1636 1.4026 -0.0700 35 1 1.6705 1.9733 -0.8530 36 1 1.7836 1.9300 0.9229 37 1 2.1643 -0.1785 -2.0848 38 1 1.4599 -1.6760 -1.4043 39 1 6.6973 -2.3074 0.6145 40 1 4.2428 -0.5986 1.0652 41 1 3.6664 -2.2886 1.0471 42 1 0.6463 -2.3177 0.8076 43 1 0.8329 -4.1442 5.1585 44 1 -2.5604 -7.5004 3.9168 45 1 -2.7904 -8.8682 6.2277 46 1 -1.1533 -7.7640 7.9482 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975068836.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:09:10 Heat of formation + Delta-G solvation = 85.968180 kcal Electronic energy + Delta-G solvation = -29818.029826 eV Core-core repulsion = 25712.107952 eV Total energy + Delta-G solvation = -4105.921874 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.11369 -42.45634 -39.53774 -37.70641 -33.84454 -33.60391 -33.01577 -32.25150 -31.92325 -30.63636 -28.68930 -27.98279 -26.78043 -25.56843 -24.39870 -23.19851 -22.71802 -22.04985 -20.91057 -20.24314 -19.64036 -19.12103 -18.52626 -17.18427 -16.66558 -16.58562 -16.55386 -15.71737 -15.61922 -14.89649 -14.65482 -14.09529 -13.97088 -13.93971 -13.79857 -13.59805 -13.32335 -13.18007 -13.14503 -12.70011 -12.43440 -12.01012 -11.91609 -11.61387 -11.33455 -11.17320 -11.00877 -10.93369 -10.73804 -10.57513 -10.34950 -10.20653 -10.12524 -9.93790 -9.81692 -9.71564 -9.57930 -9.53020 -8.57729 -8.38265 -8.33262 -6.75998 -5.62847 -2.97472 0.68608 1.65616 1.95981 2.00326 2.55628 2.93390 3.44303 3.48737 3.51148 3.51573 3.69564 4.13218 4.36524 4.50193 4.55291 4.59175 4.98029 5.01058 5.23623 5.34064 5.36950 5.38393 5.40433 5.58749 5.59961 5.61035 5.70450 5.87079 5.99044 6.00938 6.09767 6.15080 6.22272 6.26975 6.31997 6.44932 6.56766 6.64108 6.68383 6.70108 6.73546 6.80276 7.01840 7.54133 7.63321 7.72472 7.89676 8.03706 8.32371 8.62675 9.28376 9.89135 10.54915 11.47788 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013294 B = 0.002621 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.677903 B =10680.741683 C =11832.143438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 C -0.125 4.125 4 C 0.144 3.856 5 N -0.603 5.603 6 C -0.228 4.228 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.918 5.918 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.175 3.825 15 C 0.123 3.877 16 H 0.090 0.910 17 N -0.694 5.694 18 C 0.599 3.401 19 O -0.529 6.529 20 C 0.002 3.998 21 C -0.138 4.138 22 C 0.068 3.932 23 C 0.061 3.939 24 C -0.197 4.197 25 C -0.210 4.210 26 C -0.027 4.027 27 O -0.159 6.159 28 N -0.368 5.368 29 H 0.447 0.553 30 N -0.235 5.235 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.040 0.960 38 H 0.016 0.984 39 H 0.252 0.748 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.402 0.598 43 H 0.171 0.829 44 H 0.150 0.850 45 H 0.154 0.846 46 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.084 -7.690 9.630 23.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 C -0.183 4.183 4 C 0.017 3.983 5 N -0.329 5.329 6 C -0.357 4.357 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.741 3.259 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.050 3.950 15 C 0.018 3.982 16 H 0.108 0.892 17 N -0.344 5.344 18 C 0.382 3.618 19 O -0.403 6.403 20 C -0.158 4.158 21 C -0.166 4.166 22 C -0.056 4.056 23 C 0.009 3.991 24 C -0.218 4.218 25 C -0.229 4.229 26 C -0.096 4.096 27 O -0.053 6.053 28 N -0.085 5.085 29 H 0.293 0.707 30 N -0.072 5.072 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.034 0.966 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.238 0.762 43 H 0.188 0.812 44 H 0.167 0.833 45 H 0.171 0.829 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -19.424 -7.116 9.315 22.687 hybrid contribution 0.281 -1.244 -0.335 1.318 sum -19.143 -8.360 8.980 22.738 Atomic orbital electron populations 1.21676 0.94692 1.01239 1.01304 1.22089 0.94448 0.95995 0.96542 1.21595 1.02522 0.93676 1.00518 1.21716 0.87773 0.94529 0.94259 1.44431 1.07604 1.79030 1.01846 1.19009 0.89279 1.38467 0.88908 0.90522 1.24809 0.97820 1.01862 0.95935 1.69963 1.24207 1.53326 1.08996 0.86153 0.82523 0.77781 0.79472 1.21653 1.21774 1.20831 1.21533 0.89538 1.00563 0.83372 1.22554 0.92354 0.86038 0.97242 0.89176 1.45858 1.43688 1.32797 1.12062 1.16754 0.81106 0.81012 0.82968 1.90810 1.40519 1.62222 1.46788 1.22057 1.00724 1.00615 0.92394 1.21893 0.99794 0.95235 0.99679 1.18174 1.02315 0.99295 0.85830 1.18821 0.98974 0.97950 0.83395 1.21760 1.01718 0.97755 1.00528 1.21734 1.03944 1.03787 0.93409 1.24254 0.96520 0.89340 0.99437 1.84113 1.54796 1.44817 1.21568 1.43378 1.33080 1.24829 1.07224 0.70731 1.73588 1.09063 1.00523 1.24007 0.92840 0.92674 0.92919 0.91160 0.92901 0.93300 0.94126 0.96635 0.93714 0.92687 0.93319 0.76242 0.81181 0.83261 0.82876 0.77387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 8.23 37.16 0.31 -1.47 16 2 C -0.09 -1.52 0.84 -152.10 -0.13 -1.65 16 3 C -0.13 -2.03 8.58 37.16 0.32 -1.71 16 4 C 0.14 2.91 6.16 -2.27 -0.01 2.89 16 5 N -0.60 -15.30 3.38 -169.77 -0.57 -15.88 16 6 C -0.23 -6.39 10.28 -15.06 -0.15 -6.55 16 7 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 8 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 9 N -0.92 -27.75 10.31 55.49 0.57 -27.18 16 10 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.18 4.40 4.80 -3.06 -0.01 4.38 16 15 C 0.12 2.42 2.54 -66.09 -0.17 2.25 16 16 H 0.09 1.81 7.52 -51.93 -0.39 1.42 16 17 N -0.69 -12.50 4.51 -53.00 -0.24 -12.74 16 18 C 0.60 11.28 7.83 -12.38 -0.10 11.18 16 19 O -0.53 -11.58 16.60 5.30 0.09 -11.50 16 20 C 0.00 0.04 7.11 -82.88 -0.59 -0.55 16 21 C -0.14 -1.96 10.76 -38.94 -0.42 -2.38 16 22 C 0.07 0.79 7.10 -82.52 -0.59 0.21 16 23 C 0.06 0.62 7.17 -36.64 -0.26 0.36 16 24 C -0.20 -1.56 10.85 -39.33 -0.43 -1.99 16 25 C -0.21 -1.43 10.88 -39.82 -0.43 -1.86 16 26 C -0.03 -0.19 12.08 29.50 0.36 0.17 16 27 O -0.16 -1.63 10.67 4.47 0.05 -1.58 16 28 N -0.37 -3.80 6.90 33.25 0.23 -3.57 16 29 H 0.45 2.78 8.96 -190.45 -1.71 1.08 16 30 N -0.24 -3.19 11.88 33.36 0.40 -2.80 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.69 6.44 -51.93 -0.33 0.35 16 34 H 0.07 1.34 7.91 -51.93 -0.41 0.93 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 38 H 0.02 0.32 8.00 -51.93 -0.42 -0.10 16 39 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.06 1.54 7.38 -51.93 -0.38 1.16 16 41 H 0.05 1.41 7.41 -51.93 -0.38 1.02 16 42 H 0.40 6.62 6.73 -40.82 -0.27 6.35 16 43 H 0.17 2.33 8.06 -52.48 -0.42 1.90 16 44 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 45 H 0.15 0.66 8.06 -52.48 -0.42 0.24 16 46 H 0.21 0.63 8.06 -52.49 -0.42 0.20 16 LS Contribution 385.18 15.07 5.80 5.80 Total: -1.00 -35.03 385.18 -8.75 -43.78 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -7.65 Total: 5.17 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -2.41 Total: 2.95 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: 0.38 Total: -62.16 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.14 Total: -13.08 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.03 -8.75 -43.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975068836.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.750 kcal (2) G-P(sol) polarization free energy of solvation -35.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds