Wall clock time and date at job start Sat Apr 11 2020 07:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 110.91738 * 2 1 4 4 C 1.55389 * 111.18806 * 235.94209 * 2 1 3 5 5 N 1.47424 * 104.87305 * 204.97789 * 4 2 1 6 6 C 1.36940 * 125.64965 * 204.16094 * 5 4 2 7 7 H 1.07998 * 120.00036 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00021 * 179.97438 * 6 5 4 9 9 N 1.31620 * 120.00111 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99843 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.47104 * 90.00617 * 10 8 6 12 12 H 1.48500 * 109.46961 * 210.00072 * 10 8 6 13 13 H 1.48503 * 109.47331 * 330.00618 * 10 8 6 14 14 C 1.47021 * 108.70508 * 24.13611 * 5 4 2 15 15 C 1.54329 * 107.26985 * 358.93666 * 14 5 4 16 16 H 1.08991 * 110.72107 * 219.26840 * 15 14 5 17 17 N 1.46500 * 110.72023 * 96.17207 * 15 14 5 18 18 C 1.34777 * 120.00231 * 88.84109 * 17 15 14 19 19 O 1.21572 * 119.99280 * 0.02562 * 18 17 15 20 20 C 1.47741 * 120.00197 * 179.97438 * 18 17 15 21 21 C 1.41115 * 126.30394 * 180.02562 * 20 18 17 22 22 C 1.36997 * 105.42482 * 179.73571 * 21 20 18 23 23 C 1.47326 * 126.63829 * 180.02562 * 22 21 20 24 24 C 1.36152 * 125.95045 * 179.71191 * 23 22 21 25 25 C 1.40875 * 106.72531 * 179.85429 * 24 23 22 26 26 C 1.34765 * 107.05997 * 0.41146 * 25 24 23 27 27 O 1.34321 * 108.70184 * 359.74787 * 26 25 24 28 28 N 1.36554 * 106.72888 * 359.97438 * 22 21 20 29 29 H 0.97001 * 125.03000 * 179.97438 * 28 22 21 30 30 N 1.28455 * 109.94413 * 359.97438 * 28 22 21 31 31 H 1.09001 * 109.47146 * 296.09640 * 1 2 3 32 32 H 1.09005 * 109.47081 * 56.09928 * 1 2 3 33 33 H 1.09000 * 109.46959 * 176.09656 * 1 2 3 34 34 H 1.08997 * 109.47420 * 183.90434 * 3 2 1 35 35 H 1.09004 * 109.47400 * 303.90302 * 3 2 1 36 36 H 1.09004 * 109.47128 * 63.89972 * 3 2 1 37 37 H 1.09000 * 110.34473 * 86.12970 * 4 2 1 38 38 H 1.09001 * 110.44426 * 323.88315 * 4 2 1 39 39 H 0.96999 * 119.99630 * 179.97438 * 9 8 6 40 40 H 1.08998 * 109.88008 * 239.52363 * 14 5 4 41 41 H 1.08993 * 109.88529 * 118.35081 * 14 5 4 42 42 H 0.96998 * 119.99887 * 268.84124 * 17 15 14 43 43 H 1.08003 * 127.28323 * 359.70959 * 21 20 18 44 44 H 1.07990 * 126.63585 * 0.02562 * 24 23 22 45 45 H 1.08004 * 126.46872 * 180.15435 * 25 24 23 46 46 H 1.08001 * 125.64801 * 179.74135 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0916 -0.8114 -1.2003 5 7 3.4326 -1.2460 -0.7689 6 6 4.4724 -1.5694 -1.5994 7 1 4.3446 -1.5164 -2.6705 8 6 5.6906 -1.9653 -1.0645 9 7 5.8462 -2.0304 0.2408 10 14 7.1091 -2.4057 -2.1974 11 1 7.9116 -1.1889 -2.4818 12 1 7.9688 -3.4234 -1.5414 13 1 6.5746 -2.9547 -3.4695 14 6 3.4691 -1.2742 0.7005 15 6 2.0861 -0.8079 1.2022 16 1 2.1892 -0.1708 2.0804 17 7 1.2268 -1.9574 1.4962 18 6 1.2427 -2.5144 2.7234 19 8 1.9699 -2.0625 3.5865 20 6 0.3756 -3.6733 3.0200 21 6 0.2858 -4.3560 4.2517 22 6 -0.6418 -5.3445 4.0536 23 6 -1.0947 -6.3365 5.0443 24 6 -2.0224 -7.3104 4.8336 25 6 -2.1418 -8.0248 6.0419 26 6 -1.2981 -7.4535 6.9240 27 8 -0.6672 -6.4341 6.3183 28 7 -1.0663 -5.2318 2.7607 29 1 -1.7264 -5.8043 2.3395 30 7 -0.4620 -4.2556 2.1846 31 1 -0.3633 0.4521 0.9229 32 1 -0.3633 0.5732 -0.8530 33 1 -0.3633 -1.0253 -0.0700 34 1 3.1636 1.4026 -0.0700 35 1 1.6705 1.9733 -0.8530 36 1 1.7836 1.9300 0.9229 37 1 2.1643 -0.1785 -2.0848 38 1 1.4599 -1.6760 -1.4043 39 1 6.6973 -2.3074 0.6145 40 1 4.2428 -0.5986 1.0652 41 1 3.6664 -2.2886 1.0471 42 1 0.6463 -2.3177 0.8076 43 1 0.8329 -4.1442 5.1585 44 1 -2.5604 -7.5004 3.9168 45 1 -2.7904 -8.8682 6.2277 46 1 -1.1533 -7.7640 7.9482 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000975068836.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:09:09 Heat of formation + Delta-G solvation = 61.092047 kcal Electronic energy + Delta-G solvation = -29819.108536 eV Core-core repulsion = 25712.107952 eV Total energy + Delta-G solvation = -4107.000584 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.94568 -43.28074 -41.11557 -39.31619 -35.70866 -34.63648 -34.21533 -33.12741 -32.99621 -32.59796 -29.93423 -29.24730 -28.06482 -27.41834 -25.88523 -24.54645 -23.73624 -22.82824 -22.04261 -21.70312 -21.12707 -20.10725 -19.77513 -18.67750 -18.30613 -17.58260 -17.36369 -17.15621 -16.76454 -16.53373 -15.85184 -15.67895 -15.51790 -15.41085 -15.07956 -14.96180 -14.74134 -13.99856 -13.86057 -13.79396 -13.67005 -13.43927 -13.37630 -13.14378 -12.94128 -12.82365 -12.68932 -12.57835 -12.26963 -12.11506 -11.85421 -11.75558 -11.52519 -11.35354 -11.31411 -11.26277 -10.80688 -10.73327 -10.62744 -10.00520 -9.08996 -8.87810 -7.81823 -5.18657 -0.10388 0.43818 1.23621 1.30605 1.43954 1.46715 1.55207 1.80742 1.96884 2.28320 2.38432 2.50140 3.19580 3.35884 3.38166 3.50115 3.73590 3.89465 3.97303 3.99391 4.08881 4.18574 4.21854 4.40179 4.45047 4.53506 4.70643 4.81791 4.87609 4.89258 4.90456 4.96912 5.01475 5.05508 5.06052 5.14897 5.18599 5.29539 5.36392 5.47068 5.50033 5.58296 5.69321 5.75282 5.80420 6.05837 6.19036 6.41574 6.69007 7.08921 7.16039 7.79115 8.43925 9.27516 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013294 B = 0.002621 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.677903 B =10680.741683 C =11832.143438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.073 4.073 3 C -0.123 4.123 4 C 0.138 3.862 5 N -0.620 5.620 6 C -0.235 4.235 7 H 0.088 0.912 8 C -0.072 4.072 9 N -0.954 5.954 10 Si 0.978 3.022 11 H -0.285 1.285 12 H -0.300 1.300 13 H -0.266 1.266 14 C 0.194 3.806 15 C 0.134 3.866 16 H 0.084 0.916 17 N -0.685 5.685 18 C 0.596 3.404 19 O -0.571 6.571 20 C -0.023 4.023 21 C -0.170 4.170 22 C 0.095 3.905 23 C 0.015 3.985 24 C -0.175 4.175 25 C -0.219 4.219 26 C -0.021 4.021 27 O -0.185 6.185 28 N -0.341 5.341 29 H 0.467 0.533 30 N -0.235 5.235 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.031 0.969 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.028 0.972 39 H 0.243 0.757 40 H 0.010 0.990 41 H -0.002 1.002 42 H 0.411 0.589 43 H 0.162 0.838 44 H 0.177 0.823 45 H 0.182 0.818 46 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.679 -9.035 8.673 26.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.075 4.075 3 C -0.180 4.180 4 C 0.013 3.987 5 N -0.346 5.346 6 C -0.364 4.364 7 H 0.105 0.895 8 C -0.264 4.264 9 N -0.603 5.603 10 Si 0.807 3.193 11 H -0.212 1.212 12 H -0.227 1.227 13 H -0.190 1.190 14 C 0.067 3.933 15 C 0.028 3.972 16 H 0.102 0.898 17 N -0.335 5.335 18 C 0.381 3.619 19 O -0.448 6.448 20 C -0.181 4.181 21 C -0.198 4.198 22 C -0.031 4.031 23 C -0.036 4.036 24 C -0.196 4.196 25 C -0.238 4.238 26 C -0.089 4.089 27 O -0.080 6.080 28 N -0.062 5.062 29 H 0.318 0.682 30 N -0.073 5.073 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.052 0.948 40 H 0.029 0.971 41 H 0.016 0.984 42 H 0.249 0.751 43 H 0.180 0.820 44 H 0.195 0.805 45 H 0.199 0.801 46 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -23.095 -8.464 8.289 25.956 hybrid contribution 1.279 -0.989 0.048 1.617 sum -21.816 -9.453 8.337 25.195 Atomic orbital electron populations 1.21643 0.90955 1.02386 1.03144 1.22071 0.97153 0.95388 0.92859 1.21589 1.00104 0.93564 1.02778 1.21973 0.85442 0.95397 0.95893 1.44683 1.09248 1.78952 1.01749 1.19473 0.90060 1.37079 0.89794 0.89464 1.25702 1.00698 1.02747 0.97295 1.70241 1.24126 1.54934 1.10991 0.85075 0.79065 0.77189 0.77990 1.21195 1.22693 1.19020 1.21086 0.91822 0.96647 0.83721 1.22222 0.90163 0.86718 0.98060 0.89833 1.45693 1.43196 1.32377 1.12255 1.17187 0.80793 0.81389 0.82536 1.90772 1.42380 1.63682 1.47991 1.21570 1.02064 1.00809 0.93694 1.21896 1.01733 0.96877 0.99254 1.18218 1.00427 0.98182 0.86254 1.18795 1.01570 0.99552 0.83706 1.22236 0.99626 0.95836 1.01875 1.22160 1.04355 1.04522 0.92746 1.25145 0.95187 0.87733 1.00797 1.84101 1.55813 1.46191 1.21893 1.43385 1.32273 1.23796 1.06762 0.68249 1.73489 1.08913 1.01206 1.23691 0.91656 0.90056 0.92296 0.94949 0.90142 0.91448 0.93066 0.95475 0.94774 0.97146 0.98361 0.75085 0.82010 0.80550 0.80082 0.73998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.95 8.23 71.98 0.59 -2.36 16 2 C -0.07 -2.42 0.84 -50.62 -0.04 -2.46 16 3 C -0.12 -3.83 8.58 71.98 0.62 -3.21 16 4 C 0.14 5.46 6.16 87.02 0.54 6.00 16 5 N -0.62 -32.49 3.38 -691.03 -2.34 -34.82 16 6 C -0.24 -13.45 10.28 84.03 0.86 -12.59 16 7 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 8 C -0.07 -4.27 5.49 84.86 0.47 -3.81 16 9 N -0.95 -61.28 10.31 21.65 0.22 -61.05 16 10 Si 0.98 47.66 29.55 68.60 2.03 49.69 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 14 C 0.19 10.38 4.80 86.73 0.42 10.80 16 15 C 0.13 5.47 2.54 46.18 0.12 5.59 16 16 H 0.08 3.54 7.52 -2.39 -0.02 3.52 16 17 N -0.68 -25.37 4.51 -439.87 -1.98 -27.36 16 18 C 0.60 23.71 7.83 86.76 0.68 24.39 16 19 O -0.57 -26.95 16.60 -3.94 -0.07 -27.01 16 20 C -0.02 -0.76 7.11 42.36 0.30 -0.45 16 21 C -0.17 -5.06 10.76 22.68 0.24 -4.82 16 22 C 0.09 2.15 7.10 40.51 0.29 2.44 16 23 C 0.01 0.29 7.17 24.18 0.17 0.46 16 24 C -0.18 -2.23 10.85 22.43 0.24 -1.98 16 25 C -0.22 -2.21 10.88 22.12 0.24 -1.97 16 26 C -0.02 -0.23 12.08 67.02 0.81 0.57 16 27 O -0.18 -3.62 10.67 -6.92 -0.07 -3.70 16 28 N -0.34 -6.52 6.90 -48.73 -0.34 -6.86 16 29 H 0.47 4.51 8.96 -220.00 -1.97 2.54 16 30 N -0.23 -6.24 11.88 -48.38 -0.57 -6.81 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.06 1.35 6.44 -2.39 -0.02 1.33 16 34 H 0.03 1.24 7.91 -2.39 -0.02 1.22 16 35 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.05 1.94 8.06 -2.39 -0.02 1.92 16 38 H 0.03 1.04 8.00 -2.39 -0.02 1.02 16 39 H 0.24 15.34 8.31 -92.71 -0.77 14.57 16 40 H 0.01 0.64 7.38 -2.39 -0.02 0.62 16 41 H 0.00 -0.11 7.41 -2.39 -0.02 -0.13 16 42 H 0.41 13.45 6.73 -92.71 -0.62 12.83 16 43 H 0.16 4.90 8.06 -2.91 -0.02 4.87 16 44 H 0.18 1.11 8.06 -2.92 -0.02 1.09 16 45 H 0.18 0.75 8.06 -2.91 -0.02 0.73 16 46 H 0.24 0.65 8.06 -2.91 -0.02 0.63 16 Total: -1.00 -83.30 385.18 1.86 -81.44 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -1.57 Total: 19.89 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 6.54 Total: 16.60 kcal Atomic # 7 Polarization: -131.90 SS G_CDS: -5.01 Total: -136.90 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -0.14 Total: -30.71 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -83.30 1.86 -81.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975068836.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.532 kcal (2) G-P(sol) polarization free energy of solvation -83.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds