Wall clock time and date at job start Sat Apr 11 2020 07:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 110.78074 * 2 1 4 4 C 1.54327 * 110.72271 * 123.24145 * 2 1 3 5 5 N 1.47022 * 107.27336 * 96.16968 * 4 2 1 6 6 C 1.36936 * 125.64736 * 178.97248 * 5 4 2 7 7 H 1.08003 * 119.99909 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99697 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00113 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99553 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47355 * 90.00138 * 10 8 6 12 12 H 1.48500 * 109.46856 * 210.00276 * 10 8 6 13 13 H 1.48497 * 109.47334 * 329.99825 * 10 8 6 14 14 C 1.47425 * 108.70334 * 358.94217 * 5 4 2 15 15 C 1.54915 * 104.83334 * 24.12789 * 14 5 4 16 16 H 1.08995 * 111.00392 * 204.91661 * 15 14 5 17 17 N 1.46503 * 111.00354 * 81.06431 * 15 14 5 18 18 C 1.34770 * 119.99773 * 92.80200 * 17 15 14 19 19 O 1.21277 * 120.00458 * 0.02562 * 18 17 15 20 20 C 1.50701 * 119.99953 * 179.97438 * 18 17 15 21 21 C 1.52595 * 109.24069 * 300.56141 * 20 18 17 22 22 C 1.53059 * 109.97277 * 169.67366 * 21 20 18 23 23 S 1.81666 * 108.96814 * 63.70833 * 22 21 20 24 24 O 1.42098 * 108.66278 * 191.34987 * 23 22 21 25 25 O 1.42100 * 108.75231 * 60.03999 * 23 22 21 26 26 C 1.81676 * 101.30565 * 305.67940 * 23 22 21 27 27 C 1.52588 * 109.24312 * 179.44646 * 20 18 17 28 28 H 1.08998 * 109.47167 * 298.20993 * 1 2 3 29 29 H 1.08996 * 109.47605 * 58.21859 * 1 2 3 30 30 H 1.09008 * 109.46597 * 178.21400 * 1 2 3 31 31 H 1.08999 * 109.47239 * 181.78894 * 3 2 1 32 32 H 1.09007 * 109.46791 * 301.78879 * 3 2 1 33 33 H 1.08997 * 109.47298 * 61.78088 * 3 2 1 34 34 H 1.08997 * 109.87800 * 215.59151 * 4 2 1 35 35 H 1.08998 * 109.87662 * 336.74937 * 4 2 1 36 36 H 0.97003 * 119.99386 * 179.97438 * 9 8 6 37 37 H 1.08997 * 110.36855 * 142.96531 * 14 5 4 38 38 H 1.08999 * 110.36490 * 265.17846 * 14 5 4 39 39 H 0.97000 * 120.00029 * 272.80439 * 17 15 14 40 40 H 1.08998 * 109.23622 * 59.99860 * 20 18 17 41 41 H 1.08997 * 109.38371 * 289.86908 * 21 20 18 42 42 H 1.09000 * 109.38805 * 49.55672 * 21 20 18 43 43 H 1.08994 * 109.58194 * 303.84687 * 22 21 20 44 44 H 1.09005 * 109.62229 * 183.58836 * 22 21 20 45 45 H 1.08999 * 109.55074 * 294.44265 * 26 23 22 46 46 H 1.08997 * 109.62434 * 174.20240 * 26 23 22 47 47 H 1.08996 * 109.38343 * 310.44429 * 27 20 18 48 48 H 1.08999 * 109.38301 * 70.23634 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4304 0.0000 4 6 2.0760 -0.7912 1.2072 5 7 2.3716 -2.1532 0.7390 6 6 2.8934 -3.1637 1.5017 7 1 3.1229 -2.9911 2.5429 8 6 3.1262 -4.4102 0.9370 9 7 2.8460 -4.6206 -0.3317 10 14 3.8373 -5.7889 1.9777 11 1 2.7316 -6.5557 2.6059 12 1 4.6413 -6.6940 1.1177 13 1 4.7044 -5.2130 3.0367 14 6 2.0126 -2.2509 -0.6876 15 6 2.0789 -0.7954 -1.2139 16 1 1.4396 -0.6663 -2.0871 17 7 3.4595 -0.4082 -1.5145 18 6 3.9478 -0.5672 -2.7606 19 8 3.2443 -1.0305 -3.6331 20 6 5.3677 -0.1683 -3.0700 21 6 5.5483 1.3179 -2.7748 22 6 7.0326 1.6863 -2.8349 23 16 7.6386 1.4216 -4.5270 24 8 9.0570 1.5080 -4.5207 25 8 6.8955 2.2476 -5.4128 26 6 7.1629 -0.3089 -4.8090 27 6 5.6649 -0.4645 -4.5371 28 1 -0.3633 0.4858 0.9056 29 1 -0.3634 0.5412 -0.8735 30 1 -0.3633 -1.0273 -0.0320 31 1 3.1620 1.4057 -0.0321 32 1 1.6955 1.9622 -0.8736 33 1 1.7474 1.9426 0.9055 34 1 2.9868 -0.3206 1.5775 35 1 1.3263 -0.8255 1.9977 36 1 3.0092 -5.4916 -0.7263 37 1 2.7293 -2.8787 -1.2170 38 1 1.0047 -2.6507 -0.7985 39 1 4.0221 -0.0373 -0.8168 40 1 6.0475 -0.7444 -2.4423 41 1 4.9994 1.9026 -3.5129 42 1 5.1612 1.5388 -1.7800 43 1 7.5935 1.0571 -2.1439 44 1 7.1612 2.7335 -2.5611 45 1 7.7249 -0.9561 -4.1358 46 1 7.3765 -0.5836 -5.8419 47 1 5.3590 -1.4845 -4.7694 48 1 5.1103 0.2318 -5.1662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000975107396.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:09:40 Heat of formation + Delta-G solvation = -115.373623 kcal Electronic energy + Delta-G solvation = -30027.579241 eV Core-core repulsion = 26016.077731 eV Total energy + Delta-G solvation = -4011.501509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.42710 -39.78171 -38.12357 -37.20936 -37.02296 -35.66228 -34.51715 -32.71934 -32.57919 -30.25259 -28.97630 -27.88936 -27.33974 -25.14494 -24.49226 -23.21686 -21.93644 -21.01910 -20.04335 -19.77370 -18.68449 -18.35686 -17.73844 -17.40109 -17.22231 -16.72315 -16.57471 -15.87363 -15.67732 -15.56573 -15.28981 -14.99371 -14.73529 -14.57657 -14.22193 -14.03047 -13.75002 -13.67088 -13.61938 -13.28608 -13.18932 -13.03611 -13.03351 -13.00591 -12.82885 -12.75876 -12.62011 -12.53139 -12.36372 -12.08004 -12.03950 -11.76412 -11.73205 -11.64794 -11.41707 -11.32777 -10.94455 -10.82392 -10.67368 -9.89032 -8.82719 -7.74363 -5.19136 -0.88227 1.46151 1.47436 1.55915 1.70735 1.78248 2.22969 2.49883 2.75893 3.02586 3.35454 3.45157 3.57809 3.62294 3.67642 3.71593 3.75748 4.00357 4.04950 4.10766 4.15562 4.23602 4.39401 4.45488 4.54226 4.64244 4.69826 4.79611 4.84990 4.90049 4.91156 4.95644 4.96034 5.07167 5.10826 5.14458 5.18564 5.23720 5.34562 5.36638 5.51237 5.56480 5.73805 5.86031 6.33015 6.68257 7.11463 7.37316 7.81266 8.44712 9.25840 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012116 B = 0.003476 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.436435 B = 8053.254844 C = 9318.041721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.074 4.074 3 C -0.125 4.125 4 C 0.138 3.862 5 N -0.617 5.617 6 C -0.231 4.231 7 H 0.084 0.916 8 C -0.065 4.065 9 N -0.948 5.948 10 Si 0.974 3.026 11 H -0.293 1.293 12 H -0.298 1.298 13 H -0.265 1.265 14 C 0.154 3.846 15 C 0.136 3.864 16 H 0.079 0.921 17 N -0.692 5.692 18 C 0.515 3.485 19 O -0.585 6.585 20 C -0.125 4.125 21 C -0.105 4.105 22 C -0.581 4.581 23 S 2.421 3.579 24 O -0.982 6.982 25 O -0.977 6.977 26 C -0.593 4.593 27 C -0.095 4.095 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.030 0.970 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.021 0.979 36 H 0.242 0.758 37 H 0.071 0.929 38 H -0.020 1.020 39 H 0.410 0.590 40 H 0.131 0.869 41 H 0.091 0.909 42 H 0.114 0.886 43 H 0.166 0.834 44 H 0.163 0.837 45 H 0.159 0.841 46 H 0.147 0.853 47 H 0.080 0.920 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.969 16.195 -2.596 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.076 4.076 3 C -0.182 4.182 4 C 0.013 3.987 5 N -0.343 5.343 6 C -0.360 4.360 7 H 0.102 0.898 8 C -0.257 4.257 9 N -0.598 5.598 10 Si 0.803 3.197 11 H -0.220 1.220 12 H -0.225 1.225 13 H -0.189 1.189 14 C 0.027 3.973 15 C 0.029 3.971 16 H 0.097 0.903 17 N -0.342 5.342 18 C 0.303 3.697 19 O -0.465 6.465 20 C -0.146 4.146 21 C -0.143 4.143 22 C -0.713 4.713 23 S 2.608 3.392 24 O -0.979 6.979 25 O -0.974 6.974 26 C -0.723 4.723 27 C -0.134 4.134 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.039 0.961 36 H 0.052 0.948 37 H 0.089 0.911 38 H -0.002 1.002 39 H 0.247 0.753 40 H 0.149 0.851 41 H 0.109 0.891 42 H 0.132 0.868 43 H 0.184 0.816 44 H 0.181 0.819 45 H 0.177 0.823 46 H 0.165 0.835 47 H 0.098 0.902 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.997 16.285 -3.786 18.124 hybrid contribution -0.233 -2.107 1.086 2.382 sum 6.764 14.177 -2.700 15.939 Atomic orbital electron populations 1.21697 0.92927 1.00992 1.02921 1.21827 0.96555 0.96207 0.92975 1.21704 1.01135 0.92378 1.03013 1.21648 0.97184 0.84812 0.95031 1.44685 1.73907 1.08221 1.07466 1.19434 1.33031 0.90118 0.93431 0.89843 1.25549 1.02935 0.99943 0.97321 1.70104 1.55343 1.21953 1.12428 0.85142 0.77723 0.79198 0.77649 1.22007 1.22528 1.18950 1.21963 0.96553 0.93463 0.85297 1.22127 0.82995 0.95069 0.96898 0.90257 1.45690 1.13845 1.63638 1.11052 1.20869 0.89701 0.77165 0.82003 1.90684 1.61377 1.46600 1.47818 1.21590 0.93887 0.99741 0.99372 1.21343 0.93784 0.92295 1.06887 1.30072 1.05217 1.14203 1.21801 1.07706 0.74100 0.78236 0.79158 1.93548 1.30136 1.86683 1.87572 1.93540 1.74009 1.66019 1.63856 1.30168 1.04502 1.23980 1.13606 1.21041 0.92289 1.05432 0.94607 0.90558 0.91184 0.95034 0.91615 0.91459 0.90772 0.94269 0.96079 0.94806 0.91116 1.00203 0.75292 0.85084 0.89087 0.86805 0.81583 0.81883 0.82345 0.83468 0.90181 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 8.44 71.98 0.61 -2.86 16 2 C -0.07 -2.14 0.80 -50.99 -0.04 -2.18 16 3 C -0.12 -2.40 8.16 71.98 0.59 -1.82 16 4 C 0.14 4.95 6.41 86.73 0.56 5.50 16 5 N -0.62 -29.42 3.39 -691.98 -2.35 -31.77 16 6 C -0.23 -12.25 10.27 84.03 0.86 -11.39 16 7 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 8 C -0.07 -3.58 5.49 84.86 0.47 -3.12 16 9 N -0.95 -56.35 10.09 21.65 0.22 -56.14 16 10 Si 0.97 44.60 29.55 68.60 2.03 46.63 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 13 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 14 C 0.15 7.44 5.26 86.86 0.46 7.90 16 15 C 0.14 4.82 2.67 46.39 0.12 4.95 16 16 H 0.08 2.99 7.44 -2.39 -0.02 2.98 16 17 N -0.69 -20.31 4.32 -435.95 -1.88 -22.19 16 18 C 0.52 15.56 7.14 87.66 0.63 16.18 16 19 O -0.58 -23.23 15.42 -3.02 -0.05 -23.27 16 20 C -0.12 -2.39 2.27 -11.81 -0.03 -2.42 16 21 C -0.10 -1.30 5.00 30.48 0.15 -1.15 16 22 C -0.58 -4.83 6.35 72.00 0.46 -4.37 16 23 S 2.42 37.13 5.30 -56.49 -0.30 36.83 16 24 O -0.98 -21.85 18.10 -127.38 -2.31 -24.15 16 25 O -0.98 -22.72 17.95 -127.38 -2.29 -25.00 16 26 C -0.59 -7.99 6.35 71.99 0.46 -7.53 16 27 C -0.09 -1.89 4.46 30.47 0.14 -1.75 16 28 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.03 1.04 7.45 -2.38 -0.02 1.03 16 31 H 0.06 1.09 6.34 -2.39 -0.02 1.08 16 32 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.04 1.29 7.82 -2.39 -0.02 1.27 16 35 H 0.02 0.78 7.84 -2.39 -0.02 0.76 16 36 H 0.24 14.24 8.31 -92.71 -0.77 13.47 16 37 H 0.07 4.05 5.87 -2.39 -0.01 4.03 16 38 H -0.02 -1.09 7.72 -2.39 -0.02 -1.11 16 39 H 0.41 9.73 6.40 -92.71 -0.59 9.14 16 40 H 0.13 1.98 8.09 -2.39 -0.02 1.96 16 41 H 0.09 1.22 8.01 -2.39 -0.02 1.21 16 42 H 0.11 1.03 7.22 -2.39 -0.02 1.01 16 43 H 0.17 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.16 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.16 1.39 8.14 -2.39 -0.02 1.38 16 46 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.08 1.96 7.73 -2.39 -0.02 1.94 16 48 H 0.08 1.76 8.01 -2.39 -0.02 1.74 16 Total: -1.00 -83.85 381.74 -1.14 -84.99 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.36 Total: 18.14 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 5.42 Total: -4.05 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -4.01 Total: -110.10 kcal Atomic # 8 Polarization: -67.79 SS G_CDS: -4.64 Total: -72.43 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: 37.13 SS G_CDS: -0.30 Total: 36.83 kcal Total: -83.85 -1.14 -84.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975107396.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.385 kcal (2) G-P(sol) polarization free energy of solvation -83.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds