Wall clock time and date at job start Sat Apr 11 2020 07:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 110.92135 * 2 1 4 4 C 1.54908 * 111.00213 * 236.09704 * 2 1 3 5 5 N 1.47422 * 104.83440 * 204.91718 * 4 2 1 6 6 C 1.36939 * 125.64811 * 204.16486 * 5 4 2 7 7 H 1.07994 * 120.00393 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99800 * 179.97438 * 6 5 4 9 9 N 1.31620 * 120.00441 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00183 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47064 * 59.99825 * 10 8 6 12 12 H 1.48494 * 109.47227 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46751 * 300.00353 * 10 8 6 14 14 C 1.47020 * 108.70183 * 24.13118 * 5 4 2 15 15 C 1.54318 * 107.27238 * 358.94112 * 14 5 4 16 16 H 1.09005 * 110.71893 * 219.26871 * 15 14 5 17 17 N 1.46492 * 110.72224 * 96.17067 * 15 14 5 18 18 C 1.34777 * 120.00193 * 86.45286 * 17 15 14 19 19 O 1.21281 * 119.99807 * 0.02562 * 18 17 15 20 20 C 1.50702 * 120.00204 * 180.02562 * 18 17 15 21 21 C 1.53006 * 110.28080 * 285.70228 * 20 18 17 22 22 C 1.54164 * 110.31924 * 163.58638 * 20 18 17 23 23 C 1.53872 * 108.70252 * 268.90276 * 22 20 18 24 24 C 1.55047 * 106.62836 * 312.82058 * 23 22 20 25 25 S 1.82923 * 110.31707 * 47.81452 * 20 18 17 26 26 O 1.42097 * 109.35181 * 230.27949 * 25 20 18 27 27 O 1.42098 * 109.35367 * 3.48325 * 25 20 18 28 28 H 1.09008 * 109.46816 * 296.09494 * 1 2 3 29 29 H 1.09000 * 109.47417 * 56.09002 * 1 2 3 30 30 H 1.08993 * 109.47562 * 176.09639 * 1 2 3 31 31 H 1.09000 * 109.47496 * 183.90021 * 3 2 1 32 32 H 1.09004 * 109.47202 * 303.90919 * 3 2 1 33 33 H 1.09011 * 109.46767 * 63.90187 * 3 2 1 34 34 H 1.09008 * 110.36578 * 86.08193 * 4 2 1 35 35 H 1.09000 * 110.46517 * 323.80745 * 4 2 1 36 36 H 0.96997 * 120.00360 * 179.97438 * 9 8 6 37 37 H 1.09007 * 109.88194 * 239.52275 * 14 5 4 38 38 H 1.09003 * 109.88371 * 118.35902 * 14 5 4 39 39 H 0.97000 * 120.00122 * 266.45407 * 17 15 14 40 40 H 1.08996 * 109.47351 * 59.30177 * 21 20 18 41 41 H 1.08999 * 109.46680 * 179.29876 * 21 20 18 42 42 H 1.08998 * 109.47007 * 299.29736 * 21 20 18 43 43 H 1.08993 * 109.64575 * 28.75858 * 22 20 18 44 44 H 1.08996 * 109.64383 * 149.05109 * 22 20 18 45 45 H 1.08999 * 110.02613 * 72.11219 * 23 22 20 46 46 H 1.09001 * 110.03017 * 193.52770 * 23 22 20 47 47 H 1.08993 * 110.79081 * 160.70411 * 24 23 22 48 48 H 1.09001 * 110.78651 * 283.97278 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0763 1.4291 0.0000 4 6 2.0851 -0.8067 -1.2003 5 7 3.4270 -1.2431 -0.7734 6 6 4.4642 -1.5655 -1.6073 7 1 4.3337 -1.5101 -2.6779 8 6 5.6836 -1.9634 -1.0765 9 7 5.8427 -2.0314 0.2283 10 14 7.0988 -2.4025 -2.2140 11 1 7.4402 -1.2276 -3.0556 12 1 8.2813 -2.7928 -1.4050 13 1 6.6997 -3.5365 -3.0856 14 6 3.4673 -1.2743 0.6959 15 6 2.0861 -0.8081 1.2022 16 1 2.1920 -0.1726 2.0815 17 7 1.2268 -1.9575 1.4961 18 6 1.2806 -2.5470 2.7069 19 8 2.0402 -2.1256 3.5533 20 6 0.3970 -3.7298 3.0092 21 6 -1.0484 -3.2727 3.2168 22 6 0.9078 -4.4742 4.2588 23 6 1.8885 -5.5726 3.8123 24 6 1.2091 -6.3235 2.6382 25 16 0.4876 -4.9534 1.6524 26 8 -0.8281 -5.3059 1.2477 27 8 1.4344 -4.5167 0.6870 28 1 -0.3633 0.4521 0.9230 29 1 -0.3634 0.5733 -0.8529 30 1 -0.3634 -1.0252 -0.0700 31 1 3.1637 1.4024 -0.0699 32 1 1.6705 1.9732 -0.8529 33 1 1.7837 1.9299 0.9230 34 1 2.1559 -0.1719 -2.0837 35 1 1.4523 -1.6704 -1.4044 36 1 6.6946 -2.3098 0.5992 37 1 4.2426 -0.5999 1.0599 38 1 3.6649 -2.2895 1.0399 39 1 0.6190 -2.2943 0.8194 40 1 -1.4036 -2.7708 2.3168 41 1 -1.6774 -4.1389 3.4219 42 1 -1.0938 -2.5829 4.0595 43 1 1.4183 -3.7736 4.9196 44 1 0.0671 -4.9256 4.7856 45 1 2.8238 -5.1242 3.4772 46 1 2.0782 -6.2610 4.6358 47 1 1.9456 -6.8740 2.0531 48 1 0.4309 -6.9925 3.0056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977308378.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:09:51 Heat of formation + Delta-G solvation = -72.340634 kcal Electronic energy + Delta-G solvation = -31327.048815 eV Core-core repulsion = 27317.413356 eV Total energy + Delta-G solvation = -4009.635459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -40.14986 -38.29997 -37.13029 -36.27521 -35.95090 -33.91372 -33.18816 -32.19745 -30.58903 -28.06580 -27.08356 -26.83770 -25.53916 -24.58699 -23.28118 -21.95734 -20.55955 -19.98401 -19.10193 -18.44600 -17.71615 -16.77030 -16.58184 -15.90012 -15.66189 -15.57756 -14.71167 -14.60729 -14.33490 -14.11614 -13.92328 -13.80456 -13.67334 -13.24118 -13.17938 -12.94607 -12.61000 -12.48674 -12.09109 -12.08088 -11.98029 -11.92739 -11.90061 -11.67859 -11.60281 -11.29950 -11.16827 -11.00900 -10.90503 -10.71743 -10.68635 -10.36262 -10.32081 -10.16932 -9.94669 -9.79938 -9.58464 -9.52764 -8.54004 -8.44107 -6.68292 -5.56986 -2.89867 -0.15047 2.29856 2.83805 3.20225 3.40054 3.48252 3.52100 3.53409 3.92207 4.11661 4.35049 4.45915 4.56122 4.60631 4.83784 4.89437 4.98820 5.19987 5.29484 5.30529 5.33508 5.35080 5.41488 5.59665 5.64189 5.71202 5.76360 5.84410 5.85488 5.91930 5.94700 6.06467 6.19427 6.22150 6.27735 6.43377 6.61703 6.68819 6.72827 6.75611 7.00407 7.60216 7.74131 7.82079 7.98619 8.37445 8.42049 9.34608 9.95583 10.61646 11.54186 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011493 B = 0.005012 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.659761 B = 5585.789364 C = 6720.052436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 C -0.124 4.124 4 C 0.143 3.857 5 N -0.598 5.598 6 C -0.223 4.223 7 H 0.076 0.924 8 C -0.008 4.008 9 N -0.920 5.920 10 Si 0.909 3.091 11 H -0.286 1.286 12 H -0.292 1.292 13 H -0.287 1.287 14 C 0.178 3.822 15 C 0.124 3.876 16 H 0.089 0.911 17 N -0.696 5.696 18 C 0.544 3.456 19 O -0.518 6.518 20 C -0.554 4.554 21 C -0.116 4.116 22 C -0.100 4.100 23 C -0.122 4.122 24 C -0.584 4.584 25 S 2.371 3.629 26 O -0.931 6.931 27 O -0.891 6.891 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.040 0.960 35 H 0.018 0.982 36 H 0.251 0.749 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.392 0.608 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.112 0.888 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.140 0.860 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.275 -4.157 8.514 17.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.092 4.092 3 C -0.182 4.182 4 C 0.016 3.984 5 N -0.324 5.324 6 C -0.351 4.351 7 H 0.094 0.906 8 C -0.204 4.204 9 N -0.567 5.567 10 Si 0.740 3.260 11 H -0.213 1.213 12 H -0.218 1.218 13 H -0.213 1.213 14 C 0.052 3.948 15 C 0.020 3.980 16 H 0.107 0.893 17 N -0.346 5.346 18 C 0.325 3.675 19 O -0.394 6.394 20 C -0.646 4.646 21 C -0.175 4.175 22 C -0.138 4.138 23 C -0.161 4.161 24 C -0.715 4.715 25 S 2.551 3.449 26 O -0.928 6.928 27 O -0.887 6.887 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.036 0.964 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.227 0.773 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.131 0.869 44 H 0.106 0.894 45 H 0.112 0.888 46 H 0.118 0.882 47 H 0.158 0.842 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.734 -3.827 8.181 17.282 hybrid contribution 0.729 -0.714 -0.136 1.030 sum -14.005 -4.542 8.045 16.777 Atomic orbital electron populations 1.21714 0.94930 1.00987 1.01553 1.22024 0.94336 0.96133 0.96737 1.21588 1.02604 0.93529 1.00471 1.21645 0.88077 0.94590 0.94084 1.44337 1.07460 1.78849 1.01777 1.18961 0.89185 1.38136 0.88831 0.90637 1.24764 0.97765 1.01973 0.95902 1.69946 1.24058 1.53623 1.09096 0.86243 0.82047 0.78203 0.79504 1.21328 1.21750 1.21343 1.21511 0.89001 1.00781 0.83491 1.22575 0.92730 0.85582 0.97121 0.89269 1.46004 1.42417 1.32995 1.13187 1.18833 0.82510 0.83083 0.83042 1.90680 1.38752 1.63401 1.46542 1.30296 1.04563 1.11159 1.18544 1.21482 0.88416 1.03311 1.04250 1.22030 0.99834 0.96977 0.94987 1.22246 0.99710 0.96711 0.97396 1.30637 1.12565 1.15735 1.12521 1.10081 0.76582 0.79977 0.78284 1.93596 1.37192 1.81958 1.80061 1.93838 1.61792 1.79042 1.54076 0.92720 0.92331 0.93317 0.91074 0.92827 0.93394 0.94128 0.96431 0.93858 0.92933 0.92743 0.77274 0.91056 0.89849 0.89922 0.86925 0.89375 0.88779 0.88196 0.84201 0.84594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 8.22 37.15 0.31 -1.51 16 2 C -0.09 -1.57 0.83 -152.36 -0.13 -1.70 16 3 C -0.12 -2.01 8.57 37.16 0.32 -1.69 16 4 C 0.14 3.00 6.14 -2.53 -0.02 2.99 16 5 N -0.60 -15.58 3.38 -170.07 -0.57 -16.16 16 6 C -0.22 -6.38 10.28 -15.06 -0.15 -6.53 16 7 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -27.93 10.31 55.49 0.57 -27.36 16 10 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 C 0.18 4.50 4.79 -3.07 -0.01 4.49 16 15 C 0.12 2.44 2.51 -66.10 -0.17 2.28 16 16 H 0.09 1.74 7.60 -51.93 -0.39 1.35 16 17 N -0.70 -12.25 3.70 -52.03 -0.19 -12.45 16 18 C 0.54 9.10 6.29 -10.98 -0.07 9.03 16 19 O -0.52 -10.19 15.23 5.56 0.08 -10.10 16 20 C -0.55 -6.78 0.96 -91.16 -0.09 -6.87 16 21 C -0.12 -1.10 7.91 37.16 0.29 -0.81 16 22 C -0.10 -0.99 5.36 -25.67 -0.14 -1.13 16 23 C -0.12 -1.20 6.48 -25.19 -0.16 -1.37 16 24 C -0.58 -5.57 7.32 38.24 0.28 -5.29 16 25 S 2.37 31.47 5.44 -107.50 -0.59 30.89 16 26 O -0.93 -13.26 17.18 -57.71 -0.99 -14.25 16 27 O -0.89 -16.48 15.84 -57.71 -0.91 -17.39 16 28 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.63 6.38 -51.93 -0.33 0.30 16 31 H 0.07 1.35 7.91 -51.93 -0.41 0.94 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.04 0.83 8.05 -51.92 -0.42 0.41 16 35 H 0.02 0.38 7.99 -51.93 -0.41 -0.03 16 36 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.05 1.48 7.38 -51.93 -0.38 1.09 16 38 H 0.05 1.59 7.41 -51.93 -0.38 1.20 16 39 H 0.39 6.44 5.67 -40.82 -0.23 6.21 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.62 7.98 -51.93 -0.41 0.20 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.11 1.28 6.85 -51.93 -0.36 0.92 16 44 H 0.09 0.58 7.85 -51.93 -0.41 0.17 16 45 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.14 1.27 8.14 -51.93 -0.42 0.84 16 48 H 0.14 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 381.74 15.07 5.75 5.75 Total: -1.00 -36.86 381.74 -9.63 -46.48 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.92 Total: 5.19 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 0.17 Total: -8.43 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.20 Total: -55.96 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -1.82 Total: -41.75 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Atomic # 16 Polarization: 31.47 SS G_CDS: -0.59 Total: 30.89 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.86 -9.63 -46.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977308378.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.856 kcal (2) G-P(sol) polarization free energy of solvation -36.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds