Wall clock time and date at job start Sat Apr 11 2020 07:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 110.92135 * 2 1 4 4 C 1.54908 * 111.00213 * 236.09704 * 2 1 3 5 5 N 1.47422 * 104.83440 * 204.91718 * 4 2 1 6 6 C 1.36939 * 125.64811 * 204.16486 * 5 4 2 7 7 H 1.07994 * 120.00393 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99800 * 179.97438 * 6 5 4 9 9 N 1.31620 * 120.00441 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00183 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47064 * 59.99825 * 10 8 6 12 12 H 1.48494 * 109.47227 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46751 * 300.00353 * 10 8 6 14 14 C 1.47020 * 108.70183 * 24.13118 * 5 4 2 15 15 C 1.54318 * 107.27238 * 358.94112 * 14 5 4 16 16 H 1.09005 * 110.71893 * 219.26871 * 15 14 5 17 17 N 1.46492 * 110.72224 * 96.17067 * 15 14 5 18 18 C 1.34777 * 120.00193 * 86.45286 * 17 15 14 19 19 O 1.21281 * 119.99807 * 0.02562 * 18 17 15 20 20 C 1.50702 * 120.00204 * 180.02562 * 18 17 15 21 21 C 1.53006 * 110.28080 * 285.70228 * 20 18 17 22 22 C 1.54164 * 110.31924 * 163.58638 * 20 18 17 23 23 C 1.53872 * 108.70252 * 268.90276 * 22 20 18 24 24 C 1.55047 * 106.62836 * 312.82058 * 23 22 20 25 25 S 1.82923 * 110.31707 * 47.81452 * 20 18 17 26 26 O 1.42097 * 109.35181 * 230.27949 * 25 20 18 27 27 O 1.42098 * 109.35367 * 3.48325 * 25 20 18 28 28 H 1.09008 * 109.46816 * 296.09494 * 1 2 3 29 29 H 1.09000 * 109.47417 * 56.09002 * 1 2 3 30 30 H 1.08993 * 109.47562 * 176.09639 * 1 2 3 31 31 H 1.09000 * 109.47496 * 183.90021 * 3 2 1 32 32 H 1.09004 * 109.47202 * 303.90919 * 3 2 1 33 33 H 1.09011 * 109.46767 * 63.90187 * 3 2 1 34 34 H 1.09008 * 110.36578 * 86.08193 * 4 2 1 35 35 H 1.09000 * 110.46517 * 323.80745 * 4 2 1 36 36 H 0.96997 * 120.00360 * 179.97438 * 9 8 6 37 37 H 1.09007 * 109.88194 * 239.52275 * 14 5 4 38 38 H 1.09003 * 109.88371 * 118.35902 * 14 5 4 39 39 H 0.97000 * 120.00122 * 266.45407 * 17 15 14 40 40 H 1.08996 * 109.47351 * 59.30177 * 21 20 18 41 41 H 1.08999 * 109.46680 * 179.29876 * 21 20 18 42 42 H 1.08998 * 109.47007 * 299.29736 * 21 20 18 43 43 H 1.08993 * 109.64575 * 28.75858 * 22 20 18 44 44 H 1.08996 * 109.64383 * 149.05109 * 22 20 18 45 45 H 1.08999 * 110.02613 * 72.11219 * 23 22 20 46 46 H 1.09001 * 110.03017 * 193.52770 * 23 22 20 47 47 H 1.08993 * 110.79081 * 160.70411 * 24 23 22 48 48 H 1.09001 * 110.78651 * 283.97278 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0763 1.4291 0.0000 4 6 2.0851 -0.8067 -1.2003 5 7 3.4270 -1.2431 -0.7734 6 6 4.4642 -1.5655 -1.6073 7 1 4.3337 -1.5101 -2.6779 8 6 5.6836 -1.9634 -1.0765 9 7 5.8427 -2.0314 0.2283 10 14 7.0988 -2.4025 -2.2140 11 1 7.4402 -1.2276 -3.0556 12 1 8.2813 -2.7928 -1.4050 13 1 6.6997 -3.5365 -3.0856 14 6 3.4673 -1.2743 0.6959 15 6 2.0861 -0.8081 1.2022 16 1 2.1920 -0.1726 2.0815 17 7 1.2268 -1.9575 1.4961 18 6 1.2806 -2.5470 2.7069 19 8 2.0402 -2.1256 3.5533 20 6 0.3970 -3.7298 3.0092 21 6 -1.0484 -3.2727 3.2168 22 6 0.9078 -4.4742 4.2588 23 6 1.8885 -5.5726 3.8123 24 6 1.2091 -6.3235 2.6382 25 16 0.4876 -4.9534 1.6524 26 8 -0.8281 -5.3059 1.2477 27 8 1.4344 -4.5167 0.6870 28 1 -0.3633 0.4521 0.9230 29 1 -0.3634 0.5733 -0.8529 30 1 -0.3634 -1.0252 -0.0700 31 1 3.1637 1.4024 -0.0699 32 1 1.6705 1.9732 -0.8529 33 1 1.7837 1.9299 0.9230 34 1 2.1559 -0.1719 -2.0837 35 1 1.4523 -1.6704 -1.4044 36 1 6.6946 -2.3098 0.5992 37 1 4.2426 -0.5999 1.0599 38 1 3.6649 -2.2895 1.0399 39 1 0.6190 -2.2943 0.8194 40 1 -1.4036 -2.7708 2.3168 41 1 -1.6774 -4.1389 3.4219 42 1 -1.0938 -2.5829 4.0595 43 1 1.4183 -3.7736 4.9196 44 1 0.0671 -4.9256 4.7856 45 1 2.8238 -5.1242 3.4772 46 1 2.0782 -6.2610 4.6358 47 1 1.9456 -6.8740 2.0531 48 1 0.4309 -6.9925 3.0056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977308378.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:09:50 Heat of formation + Delta-G solvation = -100.656529 kcal Electronic energy + Delta-G solvation = -31328.276684 eV Core-core repulsion = 27317.413356 eV Total energy + Delta-G solvation = -4010.863328 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.55464 -39.79978 -38.25092 -37.34963 -37.04873 -35.72772 -34.70559 -33.18769 -32.59334 -29.80754 -28.11950 -27.85585 -27.43969 -25.85978 -24.75012 -23.12223 -21.98101 -21.61025 -20.46184 -19.69365 -18.91432 -18.67165 -17.77826 -17.31482 -16.91186 -16.78494 -16.46510 -15.84027 -15.70306 -15.58853 -15.29394 -15.23162 -14.78442 -14.72140 -14.07309 -14.06119 -13.83660 -13.66382 -13.48254 -13.45605 -13.21416 -13.14663 -13.09002 -12.97574 -12.86089 -12.79415 -12.64992 -12.60168 -12.46216 -12.17279 -11.96651 -11.85415 -11.76180 -11.70314 -11.54188 -11.35384 -11.25412 -10.90937 -10.69265 -10.06801 -8.85111 -7.80394 -5.16056 -1.15242 1.27883 1.41877 1.46830 1.52577 1.55869 1.93452 2.41894 2.50297 2.86765 3.20753 3.36493 3.44269 3.50258 3.55929 3.66895 3.73523 3.93657 3.95149 4.04410 4.09063 4.36582 4.49141 4.51093 4.58653 4.61427 4.64042 4.71449 4.81859 4.84435 4.90708 4.92775 5.00329 5.06317 5.09016 5.10157 5.12438 5.15712 5.24930 5.31954 5.45216 5.54686 5.68870 5.79473 6.21099 6.36866 7.03297 7.12133 7.80679 8.45827 9.29131 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011493 B = 0.005012 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.659761 B = 5585.789364 C = 6720.052436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.077 4.077 3 C -0.120 4.120 4 C 0.135 3.865 5 N -0.616 5.616 6 C -0.238 4.238 7 H 0.082 0.918 8 C -0.070 4.070 9 N -0.951 5.951 10 Si 0.978 3.022 11 H -0.273 1.273 12 H -0.295 1.295 13 H -0.280 1.280 14 C 0.196 3.804 15 C 0.134 3.866 16 H 0.089 0.911 17 N -0.696 5.696 18 C 0.537 3.463 19 O -0.555 6.555 20 C -0.541 4.541 21 C -0.121 4.121 22 C -0.100 4.100 23 C -0.127 4.127 24 C -0.556 4.556 25 S 2.354 3.646 26 O -0.943 6.943 27 O -0.960 6.960 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.031 0.969 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.016 0.984 36 H 0.243 0.757 37 H 0.009 0.991 38 H 0.002 0.998 39 H 0.398 0.602 40 H 0.071 0.929 41 H 0.113 0.887 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.138 0.862 45 H 0.056 0.944 46 H 0.139 0.861 47 H 0.145 0.855 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.273 -4.963 9.229 21.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.078 4.078 3 C -0.178 4.178 4 C 0.010 3.990 5 N -0.342 5.342 6 C -0.367 4.367 7 H 0.100 0.900 8 C -0.262 4.262 9 N -0.601 5.601 10 Si 0.806 3.194 11 H -0.199 1.199 12 H -0.222 1.222 13 H -0.206 1.206 14 C 0.070 3.930 15 C 0.029 3.971 16 H 0.107 0.893 17 N -0.346 5.346 18 C 0.321 3.679 19 O -0.433 6.433 20 C -0.634 4.634 21 C -0.179 4.179 22 C -0.138 4.138 23 C -0.166 4.166 24 C -0.689 4.689 25 S 2.540 3.460 26 O -0.940 6.940 27 O -0.957 6.957 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.052 0.948 37 H 0.027 0.973 38 H 0.021 0.979 39 H 0.235 0.765 40 H 0.090 0.910 41 H 0.132 0.868 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.156 0.844 45 H 0.075 0.925 46 H 0.157 0.843 47 H 0.163 0.837 48 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -17.800 -4.609 8.829 20.397 hybrid contribution 1.669 -0.525 -0.311 1.777 sum -16.130 -5.135 8.518 18.950 Atomic orbital electron populations 1.21707 0.91045 1.02023 1.03821 1.22015 0.97235 0.95658 0.92915 1.21569 1.00090 0.93190 1.02909 1.21883 0.85834 0.95098 0.96171 1.44596 1.08931 1.78762 1.01930 1.19416 0.90202 1.37441 0.89641 0.89971 1.25669 1.00569 1.02583 0.97413 1.70227 1.24033 1.54815 1.10990 0.85162 0.78404 0.78277 0.77553 1.19862 1.22156 1.20631 1.21063 0.91619 0.96810 0.83532 1.22222 0.90388 0.86569 0.97953 0.89288 1.45941 1.42006 1.32712 1.13964 1.19640 0.82372 0.83759 0.82112 1.90659 1.40322 1.64802 1.47533 1.30255 1.05453 1.08621 1.19034 1.21683 0.86389 1.04965 1.04874 1.22205 1.01399 0.96527 0.93679 1.22343 0.98172 0.97418 0.98628 1.30519 1.13477 1.13856 1.11059 1.10291 0.75846 0.81201 0.78702 1.93567 1.37395 1.82152 1.80923 1.93766 1.63288 1.80881 1.57795 0.90581 0.89883 0.93014 0.94973 0.90220 0.91038 0.93188 0.96600 0.94754 0.97296 0.97939 0.76537 0.91039 0.86831 0.88720 0.88459 0.84371 0.92545 0.84304 0.83674 0.80002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.22 71.98 0.59 -2.54 16 2 C -0.08 -2.63 0.83 -50.79 -0.04 -2.68 16 3 C -0.12 -3.78 8.57 71.98 0.62 -3.16 16 4 C 0.14 5.81 6.14 86.86 0.53 6.34 16 5 N -0.62 -33.90 3.38 -691.99 -2.34 -36.24 16 6 C -0.24 -14.24 10.28 84.03 0.86 -13.37 16 7 H 0.08 4.66 7.83 -2.91 -0.02 4.64 16 8 C -0.07 -4.25 5.49 84.86 0.47 -3.79 16 9 N -0.95 -61.78 10.31 21.65 0.22 -61.56 16 10 Si 0.98 48.73 29.55 68.60 2.03 50.75 16 11 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 13 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 14 C 0.20 10.75 4.79 86.73 0.42 11.16 16 15 C 0.13 5.52 2.51 46.18 0.12 5.63 16 16 H 0.09 3.65 7.60 -2.38 -0.02 3.63 16 17 N -0.70 -25.35 3.70 -436.92 -1.62 -26.97 16 18 C 0.54 18.50 6.29 87.66 0.55 19.05 16 19 O -0.56 -22.93 15.23 -3.03 -0.05 -22.97 16 20 C -0.54 -12.60 0.96 -11.14 -0.01 -12.61 16 21 C -0.12 -1.94 7.91 71.98 0.57 -1.37 16 22 C -0.10 -1.73 5.36 31.28 0.17 -1.57 16 23 C -0.13 -2.25 6.48 31.59 0.20 -2.04 16 24 C -0.56 -9.11 7.32 72.68 0.53 -8.57 16 25 S 2.35 61.27 5.44 -56.49 -0.31 60.96 16 26 O -0.94 -25.38 17.18 -127.49 -2.19 -27.57 16 27 O -0.96 -37.68 15.84 -127.49 -2.02 -39.70 16 28 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.05 1.24 6.38 -2.39 -0.02 1.22 16 31 H 0.03 1.25 7.91 -2.39 -0.02 1.23 16 32 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 33 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.05 2.04 8.05 -2.38 -0.02 2.02 16 35 H 0.02 0.70 7.99 -2.39 -0.02 0.68 16 36 H 0.24 15.42 8.31 -92.71 -0.77 14.65 16 37 H 0.01 0.55 7.38 -2.38 -0.02 0.54 16 38 H 0.00 0.15 7.41 -2.39 -0.02 0.14 16 39 H 0.40 13.42 5.67 -92.71 -0.53 12.90 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.11 1.17 7.98 -2.39 -0.02 1.15 16 42 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.10 2.10 6.85 -2.39 -0.02 2.09 16 44 H 0.14 1.06 7.85 -2.39 -0.02 1.04 16 45 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.14 1.44 8.14 -2.39 -0.02 1.43 16 47 H 0.15 2.37 8.14 -2.39 -0.02 2.35 16 48 H 0.18 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -89.50 381.74 -0.27 -89.77 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.43 Total: 23.03 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 5.57 Total: -9.51 kcal Atomic # 7 Polarization: -121.03 SS G_CDS: -3.73 Total: -124.77 kcal Atomic # 8 Polarization: -85.99 SS G_CDS: -4.26 Total: -90.24 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 2.03 Total: 50.75 kcal Atomic # 16 Polarization: 61.27 SS G_CDS: -0.31 Total: 60.96 kcal Total: -89.50 -0.27 -89.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977308378.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.890 kcal (2) G-P(sol) polarization free energy of solvation -89.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds