Wall clock time and date at job start Sat Apr 11 2020 07:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 110.78362 * 2 1 4 4 C 1.54429 * 110.72367 * 236.70333 * 2 1 3 5 5 N 1.47023 * 107.27913 * 263.85264 * 4 2 1 6 6 C 1.36938 * 125.64644 * 181.02695 * 5 4 2 7 7 H 1.08007 * 120.00199 * 0.02562 * 6 5 4 8 8 C 1.38809 * 120.00141 * 180.02562 * 6 5 4 9 9 N 1.31622 * 120.00045 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99952 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47059 * 90.00181 * 10 8 6 12 12 H 1.48500 * 109.47180 * 209.99839 * 10 8 6 13 13 H 1.48500 * 109.47357 * 330.00079 * 10 8 6 14 14 C 1.47419 * 108.70749 * 1.05598 * 5 4 2 15 15 C 1.54911 * 104.83303 * 335.87815 * 14 5 4 16 16 H 1.08998 * 111.00475 * 155.12052 * 15 14 5 17 17 N 1.46503 * 110.99878 * 278.92976 * 15 14 5 18 18 C 1.34770 * 120.00353 * 270.41490 * 17 15 14 19 19 O 1.21283 * 119.99684 * 0.02562 * 18 17 15 20 20 C 1.50697 * 120.00482 * 180.02562 * 18 17 15 21 21 C 1.53002 * 110.36041 * 287.17381 * 20 18 17 22 22 C 1.54162 * 110.32290 * 165.00141 * 20 18 17 23 23 C 1.53876 * 108.70312 * 269.00435 * 22 20 18 24 24 C 1.55044 * 106.62509 * 312.81687 * 23 22 20 25 25 S 1.82923 * 110.31993 * 49.33655 * 20 18 17 26 26 O 1.42099 * 109.34867 * 3.38376 * 25 20 18 27 27 O 1.42100 * 109.47257 * 230.21771 * 25 20 18 28 28 H 1.09000 * 109.47114 * 296.76227 * 1 2 3 29 29 H 1.08998 * 109.46904 * 56.76071 * 1 2 3 30 30 H 1.08993 * 109.47385 * 176.76179 * 1 2 3 31 31 H 1.09004 * 109.47176 * 183.23618 * 3 2 1 32 32 H 1.09004 * 109.47516 * 303.23877 * 3 2 1 33 33 H 1.09005 * 109.47237 * 63.23619 * 3 2 1 34 34 H 1.08996 * 109.87717 * 144.43059 * 4 2 1 35 35 H 1.09003 * 109.87462 * 23.26856 * 4 2 1 36 36 H 0.96998 * 119.99862 * 180.02562 * 9 8 6 37 37 H 1.08999 * 110.37207 * 217.03430 * 14 5 4 38 38 H 1.09006 * 110.36341 * 94.71395 * 14 5 4 39 39 H 0.97003 * 119.99380 * 90.41994 * 17 15 14 40 40 H 1.09004 * 109.47311 * 297.82470 * 21 20 18 41 41 H 1.08999 * 109.47806 * 57.82847 * 21 20 18 42 42 H 1.09002 * 109.47040 * 177.83070 * 21 20 18 43 43 H 1.09000 * 109.64697 * 149.15024 * 22 20 18 44 44 H 1.08998 * 109.64717 * 28.85947 * 22 20 18 45 45 H 1.09001 * 110.02600 * 72.11157 * 23 22 20 46 46 H 1.09003 * 110.02449 * 193.47739 * 23 22 20 47 47 H 1.08997 * 110.78860 * 160.69743 * 24 23 22 48 48 H 1.08998 * 110.79393 * 283.97847 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0765 -0.7929 -1.2073 5 7 2.3716 -2.1546 -0.7379 6 6 2.8932 -3.1658 -1.4999 7 1 3.1238 -2.9938 -2.5409 8 6 3.1257 -4.4120 -0.9343 9 7 2.8452 -4.6215 0.3345 10 14 3.8365 -5.7916 -1.9739 11 1 5.3191 -5.7559 -1.8970 12 1 3.3459 -7.0978 -1.4655 13 1 3.4098 -5.6180 -3.3857 14 6 2.0124 -2.2513 0.6886 15 6 2.0789 -0.7955 1.2138 16 1 1.4399 -0.6657 2.0873 17 7 3.4595 -0.4084 1.5145 18 6 3.9681 -0.6264 2.7434 19 8 3.2830 -1.1435 3.6002 20 6 5.3881 -0.2277 3.0529 21 6 6.3699 -1.1800 2.3672 22 6 5.6227 -0.2226 4.5765 23 6 5.3166 1.1848 5.1182 24 6 6.0367 2.1875 4.1801 25 16 5.6952 1.4944 2.5180 26 8 4.4899 2.0528 2.0135 27 8 6.8800 1.5431 1.7350 28 1 -0.3633 0.4627 0.9176 29 1 -0.3633 0.5633 -0.8595 30 1 -0.3634 -1.0259 -0.0580 31 1 3.1611 1.4060 -0.0580 32 1 1.6752 1.9700 -0.8595 33 1 1.7692 1.9343 0.9176 34 1 2.9874 -0.3229 -1.5777 35 1 1.3268 -0.8277 -1.9978 36 1 3.0080 -5.4922 0.7298 37 1 2.7289 -2.8789 1.2185 38 1 1.0036 -2.6490 0.7996 39 1 4.0075 0.0049 0.8291 40 1 6.2262 -2.1895 2.7526 41 1 6.1921 -1.1730 1.2918 42 1 7.3910 -0.8561 2.5688 43 1 6.6608 -0.4790 4.7883 44 1 4.9637 -0.9494 5.0513 45 1 4.2417 1.3650 5.1028 46 1 5.6970 1.2844 6.1348 47 1 5.6087 3.1851 4.2785 48 1 7.1076 2.2058 4.3822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977308381.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:09:55 Heat of formation + Delta-G solvation = -101.353094 kcal Electronic energy + Delta-G solvation = -31318.197107 eV Core-core repulsion = 27307.303573 eV Total energy + Delta-G solvation = -4010.893534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.49528 -39.79263 -38.19453 -37.30426 -37.00068 -35.70591 -34.73752 -33.14750 -32.61295 -29.84962 -28.08186 -27.84746 -27.43791 -25.79561 -24.73842 -23.09770 -22.02436 -21.48297 -20.37806 -19.68533 -18.87459 -18.71864 -17.73825 -17.38132 -16.86813 -16.68206 -16.51610 -15.85148 -15.67651 -15.47098 -15.25447 -15.11435 -14.74252 -14.64498 -14.20318 -14.12416 -13.77665 -13.70528 -13.62667 -13.48481 -13.21008 -13.09361 -13.03904 -12.96939 -12.88442 -12.77056 -12.62791 -12.55564 -12.45064 -12.13050 -11.90905 -11.80686 -11.77534 -11.66099 -11.46769 -11.37619 -11.21937 -10.87895 -10.74722 -10.01646 -8.86718 -7.76791 -5.22053 -1.10282 1.31913 1.43520 1.45060 1.53971 1.62885 1.96913 2.47011 2.47510 2.90834 3.23950 3.32452 3.51898 3.53399 3.59784 3.67487 3.72056 3.95283 4.00859 4.07060 4.14814 4.40391 4.46695 4.50734 4.55883 4.57775 4.68192 4.73526 4.83093 4.86502 4.91954 4.98238 5.01316 5.03581 5.11978 5.12594 5.15843 5.21101 5.27112 5.34544 5.46968 5.54344 5.63377 5.80533 6.29118 6.42360 7.07695 7.09347 7.76969 8.41418 9.23775 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012615 B = 0.004690 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.969227 B = 5968.140972 C = 6904.788956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.077 4.077 3 C -0.120 4.120 4 C 0.136 3.864 5 N -0.618 5.618 6 C -0.235 4.235 7 H 0.082 0.918 8 C -0.065 4.065 9 N -0.947 5.947 10 Si 0.977 3.023 11 H -0.286 1.286 12 H -0.297 1.297 13 H -0.270 1.270 14 C 0.155 3.845 15 C 0.135 3.865 16 H 0.088 0.912 17 N -0.690 5.690 18 C 0.539 3.461 19 O -0.558 6.558 20 C -0.551 4.551 21 C -0.121 4.121 22 C -0.104 4.104 23 C -0.119 4.119 24 C -0.547 4.547 25 S 2.371 3.629 26 O -0.944 6.944 27 O -0.953 6.953 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.037 0.963 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.027 0.973 35 H 0.030 0.970 36 H 0.244 0.756 37 H 0.073 0.927 38 H -0.009 1.009 39 H 0.397 0.603 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.091 0.909 45 H 0.078 0.922 46 H 0.137 0.863 47 H 0.166 0.834 48 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.107 17.459 10.252 21.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.078 4.078 3 C -0.178 4.178 4 C 0.011 3.989 5 N -0.343 5.343 6 C -0.364 4.364 7 H 0.100 0.900 8 C -0.258 4.258 9 N -0.597 5.597 10 Si 0.806 3.194 11 H -0.213 1.213 12 H -0.223 1.223 13 H -0.194 1.194 14 C 0.029 3.971 15 C 0.029 3.971 16 H 0.105 0.895 17 N -0.339 5.339 18 C 0.323 3.677 19 O -0.436 6.436 20 C -0.641 4.641 21 C -0.179 4.179 22 C -0.143 4.143 23 C -0.158 4.158 24 C -0.681 4.681 25 S 2.555 3.445 26 O -0.941 6.941 27 O -0.950 6.950 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.009 0.991 39 H 0.232 0.768 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.134 0.866 43 H 0.141 0.859 44 H 0.109 0.891 45 H 0.096 0.904 46 H 0.156 0.844 47 H 0.184 0.816 48 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 6.623 17.264 9.883 20.966 hybrid contribution 0.216 -1.800 -0.411 1.859 sum 6.839 15.463 9.472 19.380 Atomic orbital electron populations 1.21668 0.91887 1.01419 1.03117 1.21889 0.97245 0.95739 0.92944 1.21647 1.00441 0.92904 1.02798 1.21673 0.96959 0.84988 0.95292 1.44686 1.74043 1.08044 1.07573 1.19437 1.33405 0.90078 0.93440 0.90016 1.25592 1.02751 0.99952 0.97472 1.70098 1.55116 1.22106 1.12376 0.85095 0.77836 0.78370 0.78128 1.21283 1.22336 1.19443 1.21976 0.97110 0.92843 0.85159 1.22288 0.81900 0.95597 0.97351 0.89450 1.45748 1.14822 1.61095 1.12212 1.19571 0.87333 0.78577 0.82218 1.90630 1.61219 1.44282 1.47486 1.30311 0.99114 1.24327 1.10350 1.21545 0.98133 0.98893 0.99376 1.22190 1.06178 0.99887 0.86028 1.22317 1.01416 0.89743 1.02283 1.30489 1.12872 1.10057 1.14724 1.09920 0.75229 0.77931 0.81389 1.93622 1.46687 1.74632 1.79147 1.93579 1.47823 1.84840 1.68779 0.91097 0.90208 0.94353 0.93183 0.90751 0.91505 0.95499 0.95227 0.94657 0.90864 0.99093 0.76779 0.91077 0.92883 0.86650 0.85856 0.89065 0.90357 0.84446 0.81635 0.80857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.80 8.41 71.98 0.61 -3.19 16 2 C -0.08 -2.72 0.81 -50.96 -0.04 -2.76 16 3 C -0.12 -3.55 8.05 71.98 0.58 -2.97 16 4 C 0.14 5.70 6.41 86.77 0.56 6.26 16 5 N -0.62 -32.32 3.39 -691.78 -2.35 -34.67 16 6 C -0.23 -13.34 10.27 84.03 0.86 -12.48 16 7 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 8 C -0.07 -3.77 5.49 84.86 0.47 -3.31 16 9 N -0.95 -58.41 10.09 21.65 0.22 -58.19 16 10 Si 0.98 46.76 29.55 68.60 2.03 48.79 16 11 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 13 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 14 C 0.16 8.12 5.27 86.86 0.46 8.58 16 15 C 0.13 5.57 2.61 46.38 0.12 5.69 16 16 H 0.09 3.63 7.53 -2.39 -0.02 3.61 16 17 N -0.69 -26.39 3.77 -435.96 -1.64 -28.04 16 18 C 0.54 19.53 6.27 87.66 0.55 20.08 16 19 O -0.56 -23.58 15.19 -3.04 -0.05 -23.62 16 20 C -0.55 -14.15 0.96 -11.15 -0.01 -14.16 16 21 C -0.12 -3.23 7.94 71.98 0.57 -2.65 16 22 C -0.10 -1.86 5.34 31.28 0.17 -1.69 16 23 C -0.12 -1.39 6.48 31.59 0.20 -1.18 16 24 C -0.55 -5.29 7.31 72.68 0.53 -4.76 16 25 S 2.37 51.36 5.44 -56.49 -0.31 51.05 16 26 O -0.94 -25.65 15.19 -127.47 -1.94 -27.59 16 27 O -0.95 -25.21 17.16 -127.47 -2.19 -27.40 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.04 1.36 7.57 -2.39 -0.02 1.34 16 31 H 0.05 1.56 5.68 -2.39 -0.01 1.55 16 32 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.07 1.89 8.14 -2.38 -0.02 1.88 16 34 H 0.03 1.11 7.77 -2.39 -0.02 1.09 16 35 H 0.03 1.22 7.84 -2.39 -0.02 1.21 16 36 H 0.24 14.74 8.31 -92.71 -0.77 13.97 16 37 H 0.07 4.44 5.87 -2.39 -0.01 4.43 16 38 H -0.01 -0.50 7.80 -2.38 -0.02 -0.51 16 39 H 0.40 14.51 5.94 -92.71 -0.55 13.96 16 40 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.11 2.19 7.94 -2.39 -0.02 2.17 16 43 H 0.12 1.33 7.86 -2.39 -0.02 1.31 16 44 H 0.09 2.11 6.85 -2.39 -0.02 2.10 16 45 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.17 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.17 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -80.66 378.95 -0.20 -80.85 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 0.41 Total: 27.37 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: 5.62 Total: -8.56 kcal Atomic # 7 Polarization: -117.12 SS G_CDS: -3.77 Total: -120.90 kcal Atomic # 8 Polarization: -74.44 SS G_CDS: -4.17 Total: -78.61 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Atomic # 16 Polarization: 51.36 SS G_CDS: -0.31 Total: 51.05 kcal Total: -80.66 -0.20 -80.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977308381.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.500 kcal (2) G-P(sol) polarization free energy of solvation -80.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds