Wall clock time and date at job start Sat Apr 11 2020 07:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 110.78076 * 2 1 4 4 C 1.54319 * 110.72031 * 236.75951 * 2 1 3 5 5 N 1.47025 * 107.27020 * 263.83401 * 4 2 1 6 6 C 1.36934 * 125.65131 * 181.09814 * 5 4 2 7 7 H 1.08000 * 120.00554 * 173.80997 * 6 5 4 8 8 C 1.38812 * 119.99568 * 353.80746 * 6 5 4 9 9 N 1.31616 * 120.00290 * 6.80960 * 8 6 5 10 10 Si 1.86806 * 119.99787 * 186.81006 * 8 6 5 11 11 H 1.48502 * 109.47123 * 94.98799 * 10 8 6 12 12 H 1.48506 * 109.46950 * 214.98496 * 10 8 6 13 13 H 1.48499 * 109.46966 * 334.98681 * 10 8 6 14 14 C 1.47428 * 108.70256 * 1.05649 * 5 4 2 15 15 C 1.54903 * 104.83390 * 335.87378 * 14 5 4 16 16 H 1.08995 * 111.00894 * 155.11986 * 15 14 5 17 17 N 1.46503 * 111.00522 * 278.93645 * 15 14 5 18 18 C 1.34781 * 119.99636 * 273.54145 * 17 15 14 19 19 O 1.21623 * 119.99903 * 0.02562 * 18 17 15 20 20 C 1.47217 * 119.99518 * 179.97438 * 18 17 15 21 21 C 1.37959 * 126.81858 * 0.02562 * 20 18 17 22 22 N 1.34141 * 107.94019 * 179.97438 * 21 20 18 23 23 H 0.97002 * 125.13511 * 180.02562 * 22 21 20 24 24 N 1.39773 * 109.72434 * 359.74821 * 22 21 20 25 25 C 1.31588 * 109.04632 * 0.43313 * 24 22 21 26 26 C 1.47665 * 126.53574 * 179.85034 * 25 24 22 27 27 C 1.36017 * 125.93767 * 324.70843 * 26 25 24 28 28 C 1.40894 * 106.73481 * 180.02562 * 27 26 25 29 29 C 1.34753 * 107.04498 * 359.97438 * 28 27 26 30 30 O 1.34307 * 108.67771 * 0.02562 * 29 28 27 31 31 H 1.09005 * 109.47060 * 296.76613 * 1 2 3 32 32 H 1.09003 * 109.46971 * 56.75805 * 1 2 3 33 33 H 1.08996 * 109.47457 * 176.76000 * 1 2 3 34 34 H 1.09002 * 109.47137 * 183.23631 * 3 2 1 35 35 H 1.09000 * 109.47318 * 303.23820 * 3 2 1 36 36 H 1.08998 * 109.47481 * 63.23677 * 3 2 1 37 37 H 1.08997 * 109.88587 * 144.41696 * 4 2 1 38 38 H 1.08998 * 109.88591 * 23.24734 * 4 2 1 39 39 H 0.97006 * 119.99892 * 179.97438 * 9 8 6 40 40 H 1.09004 * 110.36771 * 217.03700 * 14 5 4 41 41 H 1.08997 * 110.36394 * 94.71293 * 14 5 4 42 42 H 0.97003 * 120.00179 * 93.54817 * 17 15 14 43 43 H 1.08003 * 126.03127 * 359.97438 * 21 20 18 44 44 H 1.08001 * 126.63097 * 0.02562 * 27 26 25 45 45 H 1.08004 * 126.48029 * 179.97438 * 28 27 26 46 46 H 1.07995 * 125.66320 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4304 0.0000 4 6 2.0760 -0.7912 -1.2072 5 7 2.3714 -2.1532 -0.7389 6 6 2.8944 -3.1634 -1.5012 7 1 3.1690 -4.1008 -1.0406 8 6 3.0713 -2.9826 -2.8661 9 7 2.8640 -1.8001 -3.4056 10 14 3.6038 -4.4175 -3.9370 11 1 2.4060 -5.0591 -4.5363 12 1 4.4943 -3.9245 -5.0183 13 1 4.3341 -5.4097 -3.1080 14 6 2.0124 -2.2509 0.6877 15 6 2.0788 -0.7955 1.2139 16 1 1.4400 -0.6663 2.0875 17 7 3.4594 -0.4082 1.5145 18 6 3.9886 -0.6839 2.7231 19 8 3.3202 -1.2545 3.5638 20 6 5.3761 -0.2953 3.0250 21 6 6.2553 0.3525 2.1820 22 7 7.4120 0.5193 2.8404 23 1 8.2032 0.9486 2.4789 24 7 7.3030 -0.0134 4.1280 25 6 6.0982 -0.5196 4.2827 26 6 5.5715 -1.1812 5.4931 27 6 6.2813 -1.9681 6.3458 28 6 5.3880 -2.3842 7.3527 29 6 4.1900 -1.8365 7.0688 30 8 4.3044 -1.1106 5.9447 31 1 -0.3633 0.4628 0.9176 32 1 -0.3633 0.5634 -0.8595 33 1 -0.3634 -1.0260 -0.0581 34 1 3.1610 1.4061 -0.0580 35 1 1.6751 1.9700 -0.8595 36 1 1.7691 1.9344 0.9175 37 1 2.9868 -0.3208 -1.5775 38 1 1.3263 -0.8256 -1.9977 39 1 2.9881 -1.6737 -4.3594 40 1 2.7292 -2.8787 1.2171 41 1 1.0037 -2.6487 0.7986 42 1 3.9926 0.0466 0.8439 43 1 6.0487 0.6695 1.1704 44 1 7.3275 -2.2244 6.2662 45 1 5.6196 -3.0217 8.1932 46 1 3.2874 -1.9613 7.6485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977599553.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:10:06 Heat of formation + Delta-G solvation = 85.228523 kcal Electronic energy + Delta-G solvation = -30735.417289 eV Core-core repulsion = 26629.463341 eV Total energy + Delta-G solvation = -4105.953948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.40540 -41.14040 -39.45570 -37.59972 -33.82683 -33.20111 -32.88983 -32.34729 -31.12556 -30.36231 -28.90903 -27.65590 -26.63113 -25.72187 -23.87905 -23.15127 -22.68871 -21.56603 -20.49273 -19.87361 -19.52997 -18.98465 -17.99453 -17.20705 -16.89153 -16.23417 -15.90242 -15.63610 -15.04992 -14.95286 -14.55853 -14.18975 -14.02726 -13.80286 -13.51954 -13.41597 -12.96672 -12.77607 -12.73981 -12.63979 -12.36535 -12.21653 -11.88198 -11.75960 -11.39411 -11.24311 -11.15469 -10.87321 -10.76510 -10.32769 -10.27024 -10.17557 -10.01746 -9.82571 -9.80057 -9.53962 -9.47477 -9.00419 -8.64381 -8.43988 -8.21493 -6.79197 -5.73320 -3.03744 1.14659 1.44013 2.15824 2.35195 2.78699 3.14688 3.39309 3.45851 3.46659 3.57498 3.75630 4.30390 4.49205 4.50456 4.92263 5.02748 5.05083 5.05930 5.25574 5.32746 5.39541 5.42272 5.54482 5.65665 5.71184 5.87228 5.90213 5.95297 5.96976 6.04979 6.15371 6.19723 6.26365 6.33149 6.46963 6.50839 6.56301 6.66605 6.75249 6.81957 6.83251 7.07700 7.14868 7.31388 7.51463 7.61952 7.80626 8.00091 8.25250 8.69738 9.22701 9.82747 10.49764 11.38883 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011712 B = 0.003304 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.104617 B = 8471.992921 C = 8916.335498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C -0.126 4.126 4 C 0.190 3.810 5 N -0.603 5.603 6 C -0.222 4.222 7 H 0.076 0.924 8 C -0.007 4.007 9 N -0.922 5.922 10 Si 0.907 3.093 11 H -0.289 1.289 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.126 3.874 15 C 0.143 3.857 16 H 0.088 0.912 17 N -0.701 5.701 18 C 0.587 3.413 19 O -0.533 6.533 20 C -0.263 4.263 21 C 0.110 3.890 22 N -0.459 5.459 23 H 0.446 0.554 24 N -0.268 5.268 25 C 0.197 3.803 26 C 0.060 3.940 27 C -0.172 4.172 28 C -0.225 4.225 29 C -0.020 4.020 30 O -0.132 6.132 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.041 0.959 38 H 0.048 0.952 39 H 0.251 0.749 40 H 0.042 0.958 41 H 0.027 0.973 42 H 0.396 0.604 43 H 0.193 0.807 44 H 0.150 0.850 45 H 0.150 0.850 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.150 8.231 14.748 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.105 4.105 3 C -0.184 4.184 4 C 0.065 3.935 5 N -0.329 5.329 6 C -0.350 4.350 7 H 0.094 0.906 8 C -0.203 4.203 9 N -0.570 5.570 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.219 1.219 13 H -0.207 1.207 14 C -0.001 4.001 15 C 0.038 3.962 16 H 0.105 0.895 17 N -0.352 5.352 18 C 0.373 3.627 19 O -0.411 6.411 20 C -0.278 4.278 21 C -0.040 4.040 22 N -0.166 5.166 23 H 0.292 0.708 24 N -0.092 5.092 25 C 0.029 3.971 26 C 0.007 3.993 27 C -0.193 4.193 28 C -0.244 4.244 29 C -0.090 4.090 30 O -0.024 6.024 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.045 0.955 42 H 0.232 0.768 43 H 0.210 0.790 44 H 0.167 0.833 45 H 0.167 0.833 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 5.594 8.157 15.497 18.384 hybrid contribution 0.403 -0.674 -1.677 1.852 sum 5.997 7.483 13.820 16.821 Atomic orbital electron populations 1.21669 0.93868 1.02126 1.00676 1.22192 0.95910 0.95194 0.97231 1.21651 1.00164 0.95541 1.01023 1.21267 0.98472 0.83410 0.90354 1.44441 1.74390 1.09154 1.04924 1.19066 1.33942 0.92966 0.89059 0.90620 1.24756 1.02088 0.96935 0.96529 1.69954 1.55736 1.20341 1.10952 0.86169 0.77867 0.81810 0.80391 1.21675 1.21895 1.20740 1.21941 0.97733 0.93753 0.86701 1.22123 0.81507 0.95896 0.96716 0.89455 1.45669 1.14887 1.60430 1.14212 1.17012 0.84533 0.78935 0.82208 1.90795 1.61258 1.41903 1.47100 1.21487 0.97337 1.14247 0.94714 1.23128 0.86020 0.96340 0.98502 1.45882 1.13273 1.47197 1.10203 0.70836 1.77376 1.17914 1.16989 0.96905 1.20100 0.90469 0.95962 0.90575 1.18467 0.82928 1.03102 0.94775 1.21755 1.00882 1.01318 0.95364 1.21702 0.93406 1.06632 1.02635 1.24207 1.00327 0.96487 0.87978 1.84279 1.27846 1.55953 1.34315 0.93549 0.92490 0.92169 0.93202 0.92482 0.93291 0.94044 0.93390 0.93895 0.93948 0.95522 0.76840 0.79026 0.83261 0.83254 0.77910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 8.41 37.16 0.31 -1.66 16 2 C -0.10 -1.78 0.81 -152.68 -0.12 -1.90 16 3 C -0.13 -1.78 8.07 37.16 0.30 -1.48 16 4 C 0.19 4.24 4.55 -3.07 -0.01 4.23 16 5 N -0.60 -14.82 3.39 -170.08 -0.58 -15.40 16 6 C -0.22 -6.09 10.26 -15.06 -0.15 -6.24 16 7 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 8 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 9 N -0.92 -26.00 10.36 55.49 0.58 -25.42 16 10 Si 0.91 21.89 29.56 -169.99 -5.02 16.87 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 14 C 0.13 2.70 6.62 -2.53 -0.02 2.68 16 15 C 0.14 2.55 2.56 -65.78 -0.17 2.38 16 16 H 0.09 1.55 7.63 -51.93 -0.40 1.16 16 17 N -0.70 -11.48 4.68 -52.87 -0.25 -11.73 16 18 C 0.59 10.20 7.81 -12.61 -0.10 10.10 16 19 O -0.53 -10.82 14.32 -15.25 -0.22 -11.04 16 20 C -0.26 -3.92 6.32 -102.91 -0.65 -4.57 16 21 C 0.11 1.17 11.50 -16.64 -0.19 0.98 16 22 N -0.46 -4.42 7.20 30.81 0.22 -4.20 16 23 H 0.45 2.45 8.96 -182.84 -1.64 0.82 16 24 N -0.27 -3.56 12.67 34.50 0.44 -3.12 16 25 C 0.20 3.01 7.29 -80.68 -0.59 2.42 16 26 C 0.06 0.93 6.74 -36.53 -0.25 0.69 16 27 C -0.17 -2.29 10.85 -39.37 -0.43 -2.71 16 28 C -0.22 -2.57 10.89 -39.81 -0.43 -3.00 16 29 C -0.02 -0.23 12.08 29.50 0.36 0.12 16 30 O -0.13 -2.10 8.74 -15.89 -0.14 -2.24 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 1.03 7.57 -51.93 -0.39 0.63 16 34 H 0.05 0.66 6.35 -51.93 -0.33 0.33 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.04 1.01 7.17 -51.93 -0.37 0.63 16 38 H 0.05 1.22 7.07 -51.93 -0.37 0.86 16 39 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.03 0.58 7.80 -51.93 -0.41 0.17 16 42 H 0.40 5.85 5.84 -40.82 -0.24 5.62 16 43 H 0.19 1.39 7.48 -52.48 -0.39 1.00 16 44 H 0.15 1.74 8.06 -52.49 -0.42 1.31 16 45 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 46 H 0.20 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -34.95 379.38 -8.96 -43.91 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -7.46 Total: 4.89 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -2.24 Total: 1.75 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: 0.41 Total: -59.87 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.36 Total: -13.27 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.95 -8.96 -43.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977599553.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.136 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds