Wall clock time and date at job start Sat Apr 11 2020 07:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 110.78076 * 2 1 4 4 C 1.54319 * 110.72031 * 236.75951 * 2 1 3 5 5 N 1.47025 * 107.27020 * 263.83401 * 4 2 1 6 6 C 1.36934 * 125.65131 * 181.09814 * 5 4 2 7 7 H 1.08000 * 120.00554 * 173.80997 * 6 5 4 8 8 C 1.38812 * 119.99568 * 353.80746 * 6 5 4 9 9 N 1.31616 * 120.00290 * 6.80960 * 8 6 5 10 10 Si 1.86806 * 119.99787 * 186.81006 * 8 6 5 11 11 H 1.48502 * 109.47123 * 94.98799 * 10 8 6 12 12 H 1.48506 * 109.46950 * 214.98496 * 10 8 6 13 13 H 1.48499 * 109.46966 * 334.98681 * 10 8 6 14 14 C 1.47428 * 108.70256 * 1.05649 * 5 4 2 15 15 C 1.54903 * 104.83390 * 335.87378 * 14 5 4 16 16 H 1.08995 * 111.00894 * 155.11986 * 15 14 5 17 17 N 1.46503 * 111.00522 * 278.93645 * 15 14 5 18 18 C 1.34781 * 119.99636 * 273.54145 * 17 15 14 19 19 O 1.21623 * 119.99903 * 0.02562 * 18 17 15 20 20 C 1.47217 * 119.99518 * 179.97438 * 18 17 15 21 21 C 1.37959 * 126.81858 * 0.02562 * 20 18 17 22 22 N 1.34141 * 107.94019 * 179.97438 * 21 20 18 23 23 H 0.97002 * 125.13511 * 180.02562 * 22 21 20 24 24 N 1.39773 * 109.72434 * 359.74821 * 22 21 20 25 25 C 1.31588 * 109.04632 * 0.43313 * 24 22 21 26 26 C 1.47665 * 126.53574 * 179.85034 * 25 24 22 27 27 C 1.36017 * 125.93767 * 324.70843 * 26 25 24 28 28 C 1.40894 * 106.73481 * 180.02562 * 27 26 25 29 29 C 1.34753 * 107.04498 * 359.97438 * 28 27 26 30 30 O 1.34307 * 108.67771 * 0.02562 * 29 28 27 31 31 H 1.09005 * 109.47060 * 296.76613 * 1 2 3 32 32 H 1.09003 * 109.46971 * 56.75805 * 1 2 3 33 33 H 1.08996 * 109.47457 * 176.76000 * 1 2 3 34 34 H 1.09002 * 109.47137 * 183.23631 * 3 2 1 35 35 H 1.09000 * 109.47318 * 303.23820 * 3 2 1 36 36 H 1.08998 * 109.47481 * 63.23677 * 3 2 1 37 37 H 1.08997 * 109.88587 * 144.41696 * 4 2 1 38 38 H 1.08998 * 109.88591 * 23.24734 * 4 2 1 39 39 H 0.97006 * 119.99892 * 179.97438 * 9 8 6 40 40 H 1.09004 * 110.36771 * 217.03700 * 14 5 4 41 41 H 1.08997 * 110.36394 * 94.71293 * 14 5 4 42 42 H 0.97003 * 120.00179 * 93.54817 * 17 15 14 43 43 H 1.08003 * 126.03127 * 359.97438 * 21 20 18 44 44 H 1.08001 * 126.63097 * 0.02562 * 27 26 25 45 45 H 1.08004 * 126.48029 * 179.97438 * 28 27 26 46 46 H 1.07995 * 125.66320 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4304 0.0000 4 6 2.0760 -0.7912 -1.2072 5 7 2.3714 -2.1532 -0.7389 6 6 2.8944 -3.1634 -1.5012 7 1 3.1690 -4.1008 -1.0406 8 6 3.0713 -2.9826 -2.8661 9 7 2.8640 -1.8001 -3.4056 10 14 3.6038 -4.4175 -3.9370 11 1 2.4060 -5.0591 -4.5363 12 1 4.4943 -3.9245 -5.0183 13 1 4.3341 -5.4097 -3.1080 14 6 2.0124 -2.2509 0.6877 15 6 2.0788 -0.7955 1.2139 16 1 1.4400 -0.6663 2.0875 17 7 3.4594 -0.4082 1.5145 18 6 3.9886 -0.6839 2.7231 19 8 3.3202 -1.2545 3.5638 20 6 5.3761 -0.2953 3.0250 21 6 6.2553 0.3525 2.1820 22 7 7.4120 0.5193 2.8404 23 1 8.2032 0.9486 2.4789 24 7 7.3030 -0.0134 4.1280 25 6 6.0982 -0.5196 4.2827 26 6 5.5715 -1.1812 5.4931 27 6 6.2813 -1.9681 6.3458 28 6 5.3880 -2.3842 7.3527 29 6 4.1900 -1.8365 7.0688 30 8 4.3044 -1.1106 5.9447 31 1 -0.3633 0.4628 0.9176 32 1 -0.3633 0.5634 -0.8595 33 1 -0.3634 -1.0260 -0.0581 34 1 3.1610 1.4061 -0.0580 35 1 1.6751 1.9700 -0.8595 36 1 1.7691 1.9344 0.9175 37 1 2.9868 -0.3208 -1.5775 38 1 1.3263 -0.8256 -1.9977 39 1 2.9881 -1.6737 -4.3594 40 1 2.7292 -2.8787 1.2171 41 1 1.0037 -2.6487 0.7986 42 1 3.9926 0.0466 0.8439 43 1 6.0487 0.6695 1.1704 44 1 7.3275 -2.2244 6.2662 45 1 5.6196 -3.0217 8.1932 46 1 3.2874 -1.9613 7.6485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977599553.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:10:06 Heat of formation + Delta-G solvation = 62.088896 kcal Electronic energy + Delta-G solvation = -30736.420699 eV Core-core repulsion = 26629.463341 eV Total energy + Delta-G solvation = -4106.957357 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.39062 -42.13077 -40.88733 -39.06760 -35.59779 -34.39483 -34.11464 -33.30390 -32.93838 -31.52583 -29.87852 -29.23998 -27.93799 -27.52416 -25.41166 -24.11003 -23.99771 -22.60203 -22.04509 -20.98767 -20.77642 -20.19673 -19.27067 -18.79415 -18.13681 -17.48015 -17.11356 -16.93093 -16.49205 -16.15303 -15.88969 -15.65820 -15.44116 -15.12827 -15.00820 -14.60833 -14.44905 -14.10321 -13.72338 -13.71473 -13.61209 -13.56275 -13.30646 -13.21976 -12.99067 -12.87417 -12.61079 -12.45831 -12.25923 -11.99866 -11.82229 -11.68164 -11.55035 -11.28957 -11.11182 -10.88633 -10.76269 -10.67208 -10.11375 -9.82569 -9.19919 -8.80087 -7.83622 -5.15436 0.12602 0.47328 1.22359 1.45435 1.45587 1.47663 1.55432 1.80406 2.19202 2.34175 2.50173 2.53251 3.34383 3.39437 3.53432 3.62634 3.73297 4.02541 4.05878 4.11835 4.15862 4.17854 4.30170 4.31189 4.48787 4.50017 4.73222 4.79195 4.85886 4.91464 4.94952 4.96388 5.03175 5.05662 5.09388 5.18962 5.27350 5.38010 5.42553 5.52193 5.59113 5.67378 5.78930 5.84086 6.02827 6.23168 6.23703 6.34259 6.72722 7.15692 7.40159 7.80562 8.46309 9.26198 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011712 B = 0.003304 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.104617 B = 8471.992921 C = 8916.335498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.090 4.090 3 C -0.122 4.122 4 C 0.202 3.798 5 N -0.617 5.617 6 C -0.241 4.241 7 H 0.067 0.933 8 C -0.051 4.051 9 N -0.939 5.939 10 Si 0.967 3.033 11 H -0.290 1.290 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.125 3.875 15 C 0.157 3.843 16 H 0.094 0.906 17 N -0.695 5.695 18 C 0.586 3.414 19 O -0.570 6.570 20 C -0.305 4.305 21 C 0.142 3.858 22 N -0.436 5.436 23 H 0.466 0.534 24 N -0.280 5.280 25 C 0.179 3.821 26 C 0.022 3.978 27 C -0.175 4.175 28 C -0.225 4.225 29 C -0.026 4.026 30 O -0.161 6.161 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.020 0.980 38 H 0.011 0.989 39 H 0.248 0.752 40 H 0.020 0.980 41 H 0.025 0.975 42 H 0.405 0.595 43 H 0.231 0.769 44 H 0.160 0.840 45 H 0.181 0.819 46 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.990 9.382 15.250 18.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.091 4.091 3 C -0.179 4.179 4 C 0.078 3.922 5 N -0.344 5.344 6 C -0.370 4.370 7 H 0.085 0.915 8 C -0.245 4.245 9 N -0.588 5.588 10 Si 0.796 3.204 11 H -0.218 1.218 12 H -0.216 1.216 13 H -0.202 1.202 14 C -0.002 4.002 15 C 0.051 3.949 16 H 0.112 0.888 17 N -0.346 5.346 18 C 0.374 3.626 19 O -0.450 6.450 20 C -0.320 4.320 21 C -0.009 4.009 22 N -0.145 5.145 23 H 0.316 0.684 24 N -0.104 5.104 25 C 0.011 3.989 26 C -0.030 4.030 27 C -0.196 4.196 28 C -0.244 4.244 29 C -0.096 4.096 30 O -0.055 6.055 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.039 0.961 38 H 0.029 0.971 39 H 0.057 0.943 40 H 0.038 0.962 41 H 0.043 0.957 42 H 0.242 0.758 43 H 0.247 0.753 44 H 0.178 0.822 45 H 0.198 0.802 46 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 6.483 9.333 16.011 19.634 hybrid contribution 0.181 -1.079 -1.803 2.109 sum 6.663 8.254 14.208 17.731 Atomic orbital electron populations 1.21656 0.92610 1.01316 1.02527 1.22091 0.96884 0.96289 0.93872 1.21633 1.00692 0.93109 1.02491 1.21047 0.96527 0.82958 0.91700 1.44643 1.74101 1.09622 1.06003 1.19285 1.34246 0.93611 0.89865 0.91495 1.25422 1.02572 0.99122 0.97416 1.70129 1.56309 1.21590 1.10783 0.85236 0.77300 0.79199 0.78634 1.21765 1.21642 1.20173 1.22002 0.96722 0.96181 0.85249 1.21896 0.82721 0.93359 0.96945 0.88808 1.45560 1.14373 1.60331 1.14328 1.17364 0.85367 0.78075 0.81746 1.90763 1.62441 1.43585 1.48164 1.21377 0.96988 1.17611 0.96063 1.23570 0.84946 0.93435 0.98993 1.45935 1.13818 1.45680 1.09038 0.68390 1.77319 1.17244 1.17301 0.98541 1.20309 0.91111 0.96539 0.90915 1.18862 0.83308 1.04850 0.95971 1.22076 1.01593 1.00594 0.95386 1.22090 0.92719 1.06593 1.02950 1.25044 1.01978 0.95442 0.87089 1.84250 1.28380 1.57103 1.35737 0.90673 0.91735 0.94253 0.92369 0.91797 0.91069 0.96135 0.97062 0.94290 0.96155 0.95736 0.75819 0.75296 0.82201 0.80177 0.74555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.71 8.41 71.98 0.61 -3.10 16 2 C -0.09 -2.98 0.81 -50.99 -0.04 -3.03 16 3 C -0.12 -3.11 8.07 71.98 0.58 -2.53 16 4 C 0.20 9.16 4.55 86.73 0.39 9.55 16 5 N -0.62 -31.08 3.39 -692.00 -2.35 -33.43 16 6 C -0.24 -13.51 10.26 84.03 0.86 -12.65 16 7 H 0.07 3.77 7.84 -2.91 -0.02 3.74 16 8 C -0.05 -2.85 5.48 84.86 0.47 -2.39 16 9 N -0.94 -53.67 10.36 21.65 0.22 -53.45 16 10 Si 0.97 45.36 29.56 68.60 2.03 47.38 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 C 0.13 5.50 6.62 86.85 0.57 6.07 16 15 C 0.16 5.53 2.56 46.38 0.12 5.65 16 16 H 0.09 3.25 7.63 -2.39 -0.02 3.24 16 17 N -0.70 -22.21 4.68 -439.42 -2.06 -24.27 16 18 C 0.59 20.37 7.81 86.60 0.68 21.05 16 19 O -0.57 -23.64 14.32 15.50 0.22 -23.41 16 20 C -0.31 -8.92 6.32 -18.76 -0.12 -9.04 16 21 C 0.14 2.69 11.50 84.27 0.97 3.66 16 22 N -0.44 -7.37 7.20 -56.44 -0.41 -7.78 16 23 H 0.47 3.69 8.96 -213.53 -1.91 1.77 16 24 N -0.28 -7.15 12.67 -44.77 -0.57 -7.71 16 25 C 0.18 5.46 7.29 43.90 0.32 5.79 16 26 C 0.02 0.70 6.74 24.25 0.16 0.87 16 27 C -0.18 -4.64 10.85 22.40 0.24 -4.40 16 28 C -0.22 -4.90 10.89 22.12 0.24 -4.65 16 29 C -0.03 -0.61 12.08 67.02 0.81 0.20 16 30 O -0.16 -5.24 8.74 13.20 0.12 -5.12 16 31 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.04 1.33 7.57 -2.39 -0.02 1.31 16 34 H 0.06 1.39 6.35 -2.39 -0.02 1.37 16 35 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.02 1.00 7.17 -2.39 -0.02 0.99 16 38 H 0.01 0.59 7.07 -2.39 -0.02 0.57 16 39 H 0.25 13.79 8.31 -92.70 -0.77 13.02 16 40 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.02 1.09 7.80 -2.39 -0.02 1.08 16 42 H 0.40 11.31 5.84 -92.71 -0.54 10.77 16 43 H 0.23 2.45 7.48 -2.91 -0.02 2.42 16 44 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 45 H 0.18 2.62 8.06 -2.91 -0.02 2.59 16 46 H 0.24 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -79.39 379.38 2.65 -76.74 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -1.42 Total: 20.02 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 6.86 Total: 11.04 kcal Atomic # 7 Polarization: -121.49 SS G_CDS: -5.16 Total: -126.65 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: 0.34 Total: -28.54 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -79.39 2.65 -76.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977599553.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.829 kcal (2) G-P(sol) polarization free energy of solvation -79.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds