Wall clock time and date at job start Sat Apr 11 2020 07:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 110.88908 * 2 1 4 4 C 1.54912 * 111.00325 * 123.88080 * 2 1 3 5 5 N 1.47426 * 104.83261 * 81.06512 * 4 2 1 6 6 C 1.36941 * 125.64875 * 203.86480 * 5 4 2 7 7 H 1.08005 * 119.99780 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99913 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99926 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99719 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47563 * 59.99703 * 10 8 6 12 12 H 1.48504 * 109.46777 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47166 * 299.99426 * 10 8 6 14 14 C 1.47024 * 108.70449 * 24.12870 * 5 4 2 15 15 C 1.54327 * 107.26774 * 358.94057 * 14 5 4 16 16 H 1.09005 * 110.86995 * 219.37109 * 15 14 5 17 17 N 1.46500 * 110.71866 * 96.17335 * 15 14 5 18 18 C 1.34773 * 120.00063 * 91.47566 * 17 15 14 19 19 O 1.21623 * 120.00409 * 359.97438 * 18 17 15 20 20 C 1.47210 * 119.99813 * 180.02562 * 18 17 15 21 21 C 1.37970 * 126.81791 * 359.68007 * 20 18 17 22 22 N 1.34135 * 107.93895 * 179.87026 * 21 20 18 23 23 H 0.97010 * 125.13305 * 180.15674 * 22 21 20 24 24 N 1.39770 * 109.73033 * 0.41056 * 22 21 20 25 25 C 1.31592 * 109.04470 * 359.74414 * 24 22 21 26 26 C 1.47659 * 126.53652 * 180.02562 * 25 24 22 27 27 C 1.36015 * 125.93778 * 324.99307 * 26 25 24 28 28 C 1.40908 * 106.73530 * 180.02562 * 27 26 25 29 29 C 1.34757 * 107.03905 * 0.02562 * 28 27 26 30 30 O 1.34299 * 108.68324 * 359.73264 * 29 28 27 31 31 H 1.08994 * 109.46864 * 297.56904 * 1 2 3 32 32 H 1.09000 * 109.46578 * 57.57453 * 1 2 3 33 33 H 1.08996 * 109.46833 * 177.57093 * 1 2 3 34 34 H 1.08992 * 109.47271 * 182.42178 * 3 2 1 35 35 H 1.09003 * 109.47056 * 302.43060 * 3 2 1 36 36 H 1.09006 * 109.46578 * 62.42421 * 3 2 1 37 37 H 1.09002 * 110.36496 * 322.22928 * 4 2 1 38 38 H 1.08995 * 110.46379 * 199.95295 * 4 2 1 39 39 H 0.97001 * 119.99407 * 180.02562 * 9 8 6 40 40 H 1.08995 * 109.88316 * 118.35549 * 14 5 4 41 41 H 1.09002 * 109.88101 * 239.52444 * 14 5 4 42 42 H 0.97005 * 119.99678 * 271.47377 * 17 15 14 43 43 H 1.08000 * 126.02645 * 0.03225 * 21 20 18 44 44 H 1.07998 * 126.63549 * 0.02562 * 27 26 25 45 45 H 1.08002 * 126.47843 * 180.02562 * 28 27 26 46 46 H 1.07998 * 125.65392 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0756 1.4294 0.0000 4 6 2.0853 -0.8062 1.2006 5 7 2.0139 -2.2156 0.7742 6 6 1.9504 -3.2997 1.6085 7 1 1.9505 -3.1578 2.6792 8 6 1.8872 -4.5809 1.0781 9 7 1.8877 -4.7538 -0.2267 10 14 1.7999 -6.0596 2.2162 11 1 0.5840 -5.9614 3.0631 12 1 1.7402 -7.3037 1.4076 13 1 3.0055 -6.0892 3.0827 14 6 2.0286 -2.2650 -0.6952 15 6 2.0862 -0.8084 -1.2019 16 1 1.4542 -0.6775 -2.0803 17 7 3.4668 -0.4162 -1.4960 18 6 3.9655 -0.5851 -2.7366 19 8 3.2697 -1.0636 -3.6119 20 6 5.3530 -0.1916 -3.0319 21 6 6.2593 0.3655 -2.1534 22 7 7.4064 0.5701 -2.8177 23 1 8.2127 0.9508 -2.4354 24 7 7.2629 0.1574 -4.1453 25 6 6.0446 -0.3078 -4.3211 26 6 5.4812 -0.8449 -5.5759 27 6 5.7630 -0.4029 -6.8310 28 6 5.0081 -1.1947 -7.7190 29 6 4.3098 -2.0711 -6.9705 30 8 4.6022 -1.8606 -5.6767 31 1 -0.3633 0.4756 0.9109 32 1 -0.3632 0.5511 -0.8675 33 1 -0.3633 -1.0267 -0.0436 34 1 3.1643 1.4028 -0.0434 35 1 1.6902 1.9654 -0.8674 36 1 1.7606 1.9384 0.9110 37 1 1.4671 -0.6454 2.0839 38 1 3.1180 -0.5234 1.4046 39 1 1.8431 -5.6491 -0.5972 40 1 2.9064 -2.8120 -1.0390 41 1 1.1219 -2.7484 -1.0589 42 1 4.0218 -0.0349 -0.7978 43 1 6.0779 0.5938 -1.1135 44 1 6.4353 0.3998 -7.0958 45 1 4.9921 -1.1144 -8.7959 46 1 3.6315 -2.8216 -7.3487 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977599556.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:10:10 Heat of formation + Delta-G solvation = 88.074287 kcal Electronic energy + Delta-G solvation = -30751.218836 eV Core-core repulsion = 26645.388289 eV Total energy + Delta-G solvation = -4105.830546 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.33323 -41.12194 -39.42208 -37.57478 -33.82880 -33.17290 -32.91996 -32.30410 -30.71572 -30.45868 -28.86653 -27.88882 -26.71961 -25.60155 -23.83166 -23.11230 -22.64329 -21.48939 -20.38301 -19.83512 -19.58863 -19.03465 -18.07607 -17.14219 -16.68141 -16.26195 -15.83181 -15.54891 -15.02883 -14.90253 -14.59018 -14.10827 -13.92470 -13.92353 -13.69726 -13.37609 -13.18859 -12.70899 -12.65572 -12.45842 -12.29783 -12.00032 -11.97792 -11.64951 -11.35884 -11.22457 -11.04392 -10.94872 -10.74207 -10.36197 -10.29436 -10.20977 -9.97089 -9.84709 -9.76278 -9.59962 -9.45063 -8.97456 -8.59086 -8.34101 -8.14822 -6.78717 -5.65033 -3.00135 1.18936 1.45270 2.18366 2.41423 2.83770 3.20659 3.42462 3.46693 3.48955 3.65526 3.80632 4.31136 4.51591 4.53261 4.91855 5.00000 5.08237 5.11897 5.26055 5.30497 5.33023 5.40105 5.56630 5.67032 5.75461 5.85253 5.91785 5.93792 6.01773 6.06335 6.19194 6.20651 6.24803 6.29191 6.44818 6.53301 6.62159 6.63413 6.70712 6.81173 6.84133 7.01341 7.12671 7.36912 7.60301 7.72057 7.88847 8.05437 8.30546 8.78026 9.26043 9.86795 10.52395 11.45241 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010818 B = 0.003482 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.554722 B = 8038.782475 C = 8885.176776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.090 4.090 3 C -0.129 4.129 4 C 0.145 3.855 5 N -0.602 5.602 6 C -0.232 4.232 7 H 0.076 0.924 8 C -0.005 4.005 9 N -0.917 5.917 10 Si 0.909 3.091 11 H -0.285 1.285 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.175 3.825 15 C 0.127 3.873 16 H 0.090 0.910 17 N -0.708 5.708 18 C 0.585 3.415 19 O -0.525 6.525 20 C -0.259 4.259 21 C 0.104 3.896 22 N -0.460 5.460 23 H 0.446 0.554 24 N -0.268 5.268 25 C 0.198 3.802 26 C 0.058 3.942 27 C -0.173 4.173 28 C -0.228 4.228 29 C -0.014 4.014 30 O -0.128 6.128 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.039 0.961 38 H 0.013 0.987 39 H 0.253 0.747 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.390 0.610 43 H 0.191 0.809 44 H 0.149 0.851 45 H 0.149 0.851 46 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.087 14.627 -7.334 18.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.092 4.092 3 C -0.187 4.187 4 C 0.018 3.982 5 N -0.329 5.329 6 C -0.360 4.360 7 H 0.094 0.906 8 C -0.202 4.202 9 N -0.564 5.564 10 Si 0.740 3.260 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.213 1.213 14 C 0.050 3.950 15 C 0.023 3.977 16 H 0.108 0.892 17 N -0.359 5.359 18 C 0.371 3.629 19 O -0.401 6.401 20 C -0.274 4.274 21 C -0.045 4.045 22 N -0.167 5.167 23 H 0.291 0.709 24 N -0.092 5.092 25 C 0.030 3.970 26 C 0.005 3.995 27 C -0.194 4.194 28 C -0.247 4.247 29 C -0.085 4.085 30 O -0.020 6.020 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.031 0.969 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.224 0.776 43 H 0.208 0.792 44 H 0.167 0.833 45 H 0.167 0.833 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 8.534 14.073 -8.262 18.415 hybrid contribution 0.054 -0.576 1.483 1.592 sum 8.588 13.497 -6.779 17.374 Atomic orbital electron populations 1.21586 0.93339 1.02840 1.00497 1.22017 0.96345 0.94086 0.96721 1.21663 1.00111 0.95668 1.01273 1.21608 0.96395 0.85877 0.94303 1.44431 1.86947 0.99619 1.01888 1.18960 1.44216 0.84027 0.88824 0.90621 1.24797 1.02189 0.97319 0.95894 1.69957 1.56383 1.20902 1.09134 0.86251 0.77803 0.82478 0.79488 1.21214 1.21641 1.21317 1.21526 1.01629 0.88663 0.83187 1.22440 0.80958 0.97305 0.97031 0.89215 1.45796 1.14819 1.64727 1.10529 1.16990 0.84716 0.78432 0.82749 1.90822 1.59530 1.43820 1.45933 1.21553 0.97268 1.15427 0.93149 1.23055 0.86164 0.96638 0.98660 1.45866 1.12953 1.50552 1.07309 0.70939 1.77383 1.16284 1.20350 0.95162 1.20119 0.90042 0.96457 0.90369 1.18481 0.96541 0.93627 0.90885 1.21724 1.03728 1.03240 0.90728 1.21691 1.02451 0.99888 1.00702 1.24262 1.01964 1.02067 0.80208 1.84340 1.47930 1.41949 1.27749 0.92915 0.93391 0.91270 0.93215 0.92853 0.92770 0.94225 0.96938 0.93633 0.93330 0.92900 0.77556 0.79222 0.83340 0.83284 0.77864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 8.61 37.16 0.32 -1.66 16 2 C -0.09 -1.46 0.83 -152.36 -0.13 -1.59 16 3 C -0.13 -1.61 8.35 37.16 0.31 -1.30 16 4 C 0.14 2.78 6.12 -2.53 -0.02 2.77 16 5 N -0.60 -14.85 3.38 -170.07 -0.58 -15.42 16 6 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 7 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 8 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 9 N -0.92 -27.42 10.31 55.49 0.57 -26.85 16 10 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.18 4.29 4.73 -3.06 -0.01 4.28 16 15 C 0.13 2.42 2.59 -66.10 -0.17 2.25 16 16 H 0.09 1.80 7.45 -51.93 -0.39 1.41 16 17 N -0.71 -11.69 4.40 -53.17 -0.23 -11.93 16 18 C 0.59 10.62 7.81 -12.62 -0.10 10.52 16 19 O -0.52 -11.47 14.23 -15.18 -0.22 -11.69 16 20 C -0.26 -3.91 6.32 -102.91 -0.65 -4.56 16 21 C 0.10 1.06 11.50 -16.64 -0.19 0.87 16 22 N -0.46 -4.30 7.20 30.81 0.22 -4.08 16 23 H 0.45 2.25 8.96 -182.84 -1.64 0.61 16 24 N -0.27 -3.59 12.67 34.50 0.44 -3.15 16 25 C 0.20 3.11 7.29 -80.68 -0.59 2.52 16 26 C 0.06 0.94 6.74 -36.53 -0.25 0.69 16 27 C -0.17 -2.35 10.85 -39.37 -0.43 -2.78 16 28 C -0.23 -2.76 10.89 -39.81 -0.43 -3.20 16 29 C -0.01 -0.19 12.08 29.50 0.36 0.16 16 30 O -0.13 -2.26 8.76 -15.83 -0.14 -2.40 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.30 7.81 -51.93 -0.41 0.89 16 34 H 0.05 0.55 6.27 -51.93 -0.33 0.22 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.04 0.76 8.05 -51.93 -0.42 0.34 16 38 H 0.01 0.24 8.04 -51.93 -0.42 -0.18 16 39 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.05 1.38 7.41 -51.93 -0.38 0.99 16 41 H 0.05 1.47 7.38 -51.93 -0.38 1.09 16 42 H 0.39 5.32 6.00 -40.82 -0.25 5.07 16 43 H 0.19 1.15 7.48 -52.49 -0.39 0.76 16 44 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 45 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 46 H 0.20 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 380.04 15.07 5.73 5.73 Total: -1.00 -36.55 380.04 -8.96 -45.51 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -7.50 Total: 4.88 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -2.23 Total: 2.21 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: 0.42 Total: -61.43 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.35 Total: -14.09 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.55 -8.96 -45.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977599556.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.580 kcal (2) G-P(sol) polarization free energy of solvation -36.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds