Wall clock time and date at job start Sat Apr 11 2020 07:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 110.88908 * 2 1 4 4 C 1.54912 * 111.00325 * 123.88080 * 2 1 3 5 5 N 1.47426 * 104.83261 * 81.06512 * 4 2 1 6 6 C 1.36941 * 125.64875 * 203.86480 * 5 4 2 7 7 H 1.08005 * 119.99780 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99913 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99926 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99719 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47563 * 59.99703 * 10 8 6 12 12 H 1.48504 * 109.46777 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47166 * 299.99426 * 10 8 6 14 14 C 1.47024 * 108.70449 * 24.12870 * 5 4 2 15 15 C 1.54327 * 107.26774 * 358.94057 * 14 5 4 16 16 H 1.09005 * 110.86995 * 219.37109 * 15 14 5 17 17 N 1.46500 * 110.71866 * 96.17335 * 15 14 5 18 18 C 1.34773 * 120.00063 * 91.47566 * 17 15 14 19 19 O 1.21623 * 120.00409 * 359.97438 * 18 17 15 20 20 C 1.47210 * 119.99813 * 180.02562 * 18 17 15 21 21 C 1.37970 * 126.81791 * 359.68007 * 20 18 17 22 22 N 1.34135 * 107.93895 * 179.87026 * 21 20 18 23 23 H 0.97010 * 125.13305 * 180.15674 * 22 21 20 24 24 N 1.39770 * 109.73033 * 0.41056 * 22 21 20 25 25 C 1.31592 * 109.04470 * 359.74414 * 24 22 21 26 26 C 1.47659 * 126.53652 * 180.02562 * 25 24 22 27 27 C 1.36015 * 125.93778 * 324.99307 * 26 25 24 28 28 C 1.40908 * 106.73530 * 180.02562 * 27 26 25 29 29 C 1.34757 * 107.03905 * 0.02562 * 28 27 26 30 30 O 1.34299 * 108.68324 * 359.73264 * 29 28 27 31 31 H 1.08994 * 109.46864 * 297.56904 * 1 2 3 32 32 H 1.09000 * 109.46578 * 57.57453 * 1 2 3 33 33 H 1.08996 * 109.46833 * 177.57093 * 1 2 3 34 34 H 1.08992 * 109.47271 * 182.42178 * 3 2 1 35 35 H 1.09003 * 109.47056 * 302.43060 * 3 2 1 36 36 H 1.09006 * 109.46578 * 62.42421 * 3 2 1 37 37 H 1.09002 * 110.36496 * 322.22928 * 4 2 1 38 38 H 1.08995 * 110.46379 * 199.95295 * 4 2 1 39 39 H 0.97001 * 119.99407 * 180.02562 * 9 8 6 40 40 H 1.08995 * 109.88316 * 118.35549 * 14 5 4 41 41 H 1.09002 * 109.88101 * 239.52444 * 14 5 4 42 42 H 0.97005 * 119.99678 * 271.47377 * 17 15 14 43 43 H 1.08000 * 126.02645 * 0.03225 * 21 20 18 44 44 H 1.07998 * 126.63549 * 0.02562 * 27 26 25 45 45 H 1.08002 * 126.47843 * 180.02562 * 28 27 26 46 46 H 1.07998 * 125.65392 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0756 1.4294 0.0000 4 6 2.0853 -0.8062 1.2006 5 7 2.0139 -2.2156 0.7742 6 6 1.9504 -3.2997 1.6085 7 1 1.9505 -3.1578 2.6792 8 6 1.8872 -4.5809 1.0781 9 7 1.8877 -4.7538 -0.2267 10 14 1.7999 -6.0596 2.2162 11 1 0.5840 -5.9614 3.0631 12 1 1.7402 -7.3037 1.4076 13 1 3.0055 -6.0892 3.0827 14 6 2.0286 -2.2650 -0.6952 15 6 2.0862 -0.8084 -1.2019 16 1 1.4542 -0.6775 -2.0803 17 7 3.4668 -0.4162 -1.4960 18 6 3.9655 -0.5851 -2.7366 19 8 3.2697 -1.0636 -3.6119 20 6 5.3530 -0.1916 -3.0319 21 6 6.2593 0.3655 -2.1534 22 7 7.4064 0.5701 -2.8177 23 1 8.2127 0.9508 -2.4354 24 7 7.2629 0.1574 -4.1453 25 6 6.0446 -0.3078 -4.3211 26 6 5.4812 -0.8449 -5.5759 27 6 5.7630 -0.4029 -6.8310 28 6 5.0081 -1.1947 -7.7190 29 6 4.3098 -2.0711 -6.9705 30 8 4.6022 -1.8606 -5.6767 31 1 -0.3633 0.4756 0.9109 32 1 -0.3632 0.5511 -0.8675 33 1 -0.3633 -1.0267 -0.0436 34 1 3.1643 1.4028 -0.0434 35 1 1.6902 1.9654 -0.8674 36 1 1.7606 1.9384 0.9110 37 1 1.4671 -0.6454 2.0839 38 1 3.1180 -0.5234 1.4046 39 1 1.8431 -5.6491 -0.5972 40 1 2.9064 -2.8120 -1.0390 41 1 1.1219 -2.7484 -1.0589 42 1 4.0218 -0.0349 -0.7978 43 1 6.0779 0.5938 -1.1135 44 1 6.4353 0.3998 -7.0958 45 1 4.9921 -1.1144 -8.7959 46 1 3.6315 -2.8216 -7.3487 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977599556.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:10:09 Heat of formation + Delta-G solvation = 62.207386 kcal Electronic energy + Delta-G solvation = -30752.340509 eV Core-core repulsion = 26645.388289 eV Total energy + Delta-G solvation = -4106.952219 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.40992 -42.12610 -40.88734 -39.07658 -35.64036 -34.49170 -34.13922 -33.30666 -32.57023 -31.63103 -29.91350 -29.46939 -27.98449 -27.35386 -25.38859 -24.10387 -23.98500 -22.59783 -22.03965 -21.06981 -20.83259 -20.25894 -19.26624 -18.63235 -18.14822 -17.52100 -17.09944 -16.96317 -16.55437 -16.07061 -15.89966 -15.64856 -15.41979 -15.30792 -14.96987 -14.75569 -14.50938 -13.91720 -13.72793 -13.71512 -13.58155 -13.41074 -13.29716 -13.11057 -12.94679 -12.79347 -12.62447 -12.53217 -12.24573 -12.15110 -11.80725 -11.68062 -11.46624 -11.28358 -11.25719 -10.92521 -10.77178 -10.68294 -10.09040 -9.78456 -9.20497 -8.84785 -7.79911 -5.16527 0.11925 0.49490 1.20051 1.44803 1.47918 1.48303 1.54806 1.81041 2.16377 2.41166 2.51405 2.52767 3.37798 3.38950 3.53716 3.56933 3.78546 4.02827 4.05185 4.11526 4.13955 4.16493 4.30685 4.32983 4.45926 4.58263 4.71821 4.80567 4.90131 4.94352 4.95350 5.00734 5.01571 5.10709 5.17433 5.20410 5.22485 5.37851 5.41071 5.49870 5.59449 5.61512 5.78148 5.83788 6.04231 6.21449 6.25929 6.35156 6.74882 7.11733 7.44895 7.82376 8.46650 9.28930 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010818 B = 0.003482 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.554722 B = 8038.782475 C = 8885.176776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 C -0.123 4.123 4 C 0.139 3.861 5 N -0.620 5.620 6 C -0.236 4.236 7 H 0.088 0.912 8 C -0.069 4.069 9 N -0.954 5.954 10 Si 0.975 3.025 11 H -0.275 1.275 12 H -0.302 1.302 13 H -0.275 1.275 14 C 0.195 3.805 15 C 0.142 3.858 16 H 0.073 0.927 17 N -0.694 5.694 18 C 0.581 3.419 19 O -0.575 6.575 20 C -0.307 4.307 21 C 0.147 3.853 22 N -0.434 5.434 23 H 0.468 0.532 24 N -0.279 5.279 25 C 0.175 3.825 26 C 0.019 3.981 27 C -0.170 4.170 28 C -0.219 4.219 29 C -0.034 4.034 30 O -0.170 6.170 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.027 0.973 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.037 0.963 39 H 0.242 0.758 40 H -0.002 1.002 41 H 0.001 0.999 42 H 0.407 0.593 43 H 0.241 0.759 44 H 0.168 0.832 45 H 0.184 0.816 46 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.785 17.849 -5.525 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.076 4.076 3 C -0.180 4.180 4 C 0.014 3.986 5 N -0.346 5.346 6 C -0.365 4.365 7 H 0.106 0.894 8 C -0.262 4.262 9 N -0.604 5.604 10 Si 0.804 3.196 11 H -0.201 1.201 12 H -0.229 1.229 13 H -0.201 1.201 14 C 0.069 3.931 15 C 0.036 3.964 16 H 0.091 0.909 17 N -0.346 5.346 18 C 0.370 3.630 19 O -0.454 6.454 20 C -0.322 4.322 21 C -0.005 4.005 22 N -0.143 5.143 23 H 0.318 0.682 24 N -0.103 5.103 25 C 0.008 3.992 26 C -0.033 4.033 27 C -0.191 4.191 28 C -0.238 4.238 29 C -0.103 4.103 30 O -0.063 6.063 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.016 0.984 41 H 0.019 0.981 42 H 0.245 0.755 43 H 0.257 0.743 44 H 0.186 0.814 45 H 0.202 0.798 46 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 10.299 17.377 -6.402 21.190 hybrid contribution -0.426 -1.538 0.934 1.849 sum 9.873 15.839 -5.468 19.449 Atomic orbital electron populations 1.21590 0.93199 1.00769 1.02587 1.21989 0.96454 0.96029 0.93113 1.21646 1.01235 0.92171 1.02970 1.21906 0.97930 0.83103 0.95650 1.44671 1.86613 1.01644 1.01653 1.19452 1.42199 0.85037 0.89805 0.89387 1.25658 1.03052 1.00364 0.97134 1.70247 1.58513 1.20419 1.11185 0.85199 0.78380 0.78495 0.77561 1.20067 1.22864 1.20063 1.21050 0.96838 0.91571 0.83654 1.21988 0.82584 0.94427 0.97432 0.90881 1.45521 1.13932 1.64368 1.10779 1.17499 0.85795 0.77347 0.82388 1.90791 1.61143 1.46046 1.47461 1.21364 0.96690 1.19496 0.94622 1.23622 0.84563 0.92730 0.99574 1.45926 1.13666 1.48685 1.06045 0.68234 1.77321 1.15215 1.20625 0.97174 1.20320 0.90860 0.97252 0.90734 1.19012 0.97471 0.94369 0.92431 1.22076 1.03543 1.03332 0.90131 1.22097 1.01012 0.98527 1.02131 1.24990 1.02764 1.03242 0.79343 1.84303 1.49054 1.43106 1.29864 0.90499 0.91620 0.95415 0.91311 0.92001 0.90330 0.93419 0.94527 0.94895 0.98381 0.98114 0.75480 0.74298 0.81442 0.79832 0.75418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.78 8.61 71.98 0.62 -3.17 16 2 C -0.07 -2.28 0.83 -50.79 -0.04 -2.32 16 3 C -0.12 -2.49 8.35 71.98 0.60 -1.88 16 4 C 0.14 5.06 6.12 86.86 0.53 5.59 16 5 N -0.62 -31.11 3.38 -691.97 -2.34 -33.45 16 6 C -0.24 -13.12 10.28 84.03 0.86 -12.26 16 7 H 0.09 4.57 7.83 -2.91 -0.02 4.55 16 8 C -0.07 -4.05 5.49 84.86 0.47 -3.59 16 9 N -0.95 -60.79 10.31 21.65 0.22 -60.57 16 10 Si 0.98 46.83 29.55 68.60 2.03 48.85 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 13 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 14 C 0.20 10.19 4.73 86.73 0.41 10.60 16 15 C 0.14 5.51 2.59 46.18 0.12 5.63 16 16 H 0.07 3.10 7.45 -2.38 -0.02 3.09 16 17 N -0.69 -22.62 4.40 -440.38 -1.94 -24.56 16 18 C 0.58 21.71 7.81 86.60 0.68 22.38 16 19 O -0.57 -27.00 14.23 15.44 0.22 -26.78 16 20 C -0.31 -9.14 6.32 -18.76 -0.12 -9.25 16 21 C 0.15 2.50 11.50 84.28 0.97 3.47 16 22 N -0.43 -6.72 7.20 -56.43 -0.41 -7.13 16 23 H 0.47 2.76 8.96 -213.52 -1.91 0.84 16 24 N -0.28 -7.12 12.67 -44.77 -0.57 -7.69 16 25 C 0.18 5.58 7.29 43.90 0.32 5.90 16 26 C 0.02 0.65 6.74 24.24 0.16 0.82 16 27 C -0.17 -4.65 10.85 22.41 0.24 -4.40 16 28 C -0.22 -5.23 10.89 22.12 0.24 -4.99 16 29 C -0.03 -0.96 12.08 67.02 0.81 -0.15 16 30 O -0.17 -6.46 8.76 13.10 0.11 -6.35 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.03 1.06 7.81 -2.39 -0.02 1.04 16 34 H 0.07 1.14 6.27 -2.39 -0.02 1.13 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.05 1.69 8.05 -2.39 -0.02 1.67 16 38 H 0.04 1.20 8.04 -2.39 -0.02 1.18 16 39 H 0.24 15.25 8.31 -92.71 -0.77 14.48 16 40 H 0.00 -0.12 7.41 -2.39 -0.02 -0.14 16 41 H 0.00 0.04 7.38 -2.39 -0.02 0.03 16 42 H 0.41 9.95 6.00 -92.70 -0.56 9.40 16 43 H 0.24 1.48 7.48 -2.91 -0.02 1.46 16 44 H 0.17 3.73 8.06 -2.91 -0.02 3.71 16 45 H 0.18 2.92 8.06 -2.91 -0.02 2.89 16 46 H 0.23 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -89.87 380.04 2.77 -87.11 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -1.44 Total: 18.17 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 6.87 Total: 12.38 kcal Atomic # 7 Polarization: -128.36 SS G_CDS: -5.03 Total: -133.39 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: 0.33 Total: -33.12 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.85 kcal Total: -89.87 2.77 -87.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977599556.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.314 kcal (2) G-P(sol) polarization free energy of solvation -89.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds