Wall clock time and date at job start Sat Apr 11 2020 07:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36935 * 120.00256 * 2 1 4 4 H 1.07995 * 119.99712 * 154.93271 * 3 2 1 5 5 C 1.38808 * 119.99753 * 334.93869 * 3 2 1 6 6 N 1.31622 * 120.00485 * 4.82377 * 5 3 2 7 7 Si 1.86804 * 119.99727 * 184.82677 * 5 3 2 8 8 H 1.48498 * 109.47536 * 59.99697 * 7 5 3 9 9 H 1.48505 * 109.47040 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47161 * 299.99395 * 7 5 3 11 11 C 1.46496 * 119.99716 * 179.97438 * 2 1 3 12 12 C 1.53042 * 109.46225 * 60.02821 * 11 2 1 13 13 C 1.53194 * 109.31231 * 178.59811 * 12 11 2 14 14 N 1.46925 * 108.76424 * 54.66241 * 13 12 11 15 15 C 1.34776 * 120.63251 * 126.40316 * 14 13 12 16 16 O 1.21281 * 119.99723 * 175.14162 * 15 14 13 17 17 C 1.50697 * 119.99817 * 355.14595 * 15 14 13 18 18 C 1.52997 * 110.28561 * 65.01199 * 17 15 14 19 19 C 1.54164 * 110.32096 * 302.89063 * 17 15 14 20 20 C 1.54013 * 108.63475 * 213.27257 * 19 17 15 21 21 C 1.55055 * 106.69727 * 47.04969 * 20 19 17 22 22 S 1.82923 * 110.31621 * 187.12272 * 17 15 14 23 23 O 1.42094 * 109.35361 * 234.42380 * 22 17 15 24 24 O 1.42101 * 109.35268 * 7.49424 * 22 17 15 25 25 C 1.46930 * 118.73487 * 306.37942 * 14 13 12 26 26 C 1.53038 * 109.46313 * 299.97578 * 11 2 1 27 27 H 1.09001 * 109.46592 * 84.90419 * 1 2 3 28 28 H 1.08999 * 109.47143 * 324.91142 * 1 2 3 29 29 H 1.08997 * 109.47438 * 204.90507 * 1 2 3 30 30 H 0.97000 * 120.00127 * 180.02562 * 6 5 3 31 31 H 1.08999 * 109.46310 * 180.02562 * 11 2 1 32 32 H 1.09001 * 109.49881 * 298.56890 * 12 11 2 33 33 H 1.09005 * 109.49198 * 58.66453 * 12 11 2 34 34 H 1.09002 * 109.60054 * 294.86622 * 13 12 11 35 35 H 1.09004 * 109.69906 * 174.50487 * 13 12 11 36 36 H 1.08997 * 109.47287 * 65.89911 * 18 17 15 37 37 H 1.08999 * 109.47083 * 185.89711 * 18 17 15 38 38 H 1.09000 * 109.47034 * 305.89896 * 18 17 15 39 39 H 1.09002 * 109.64666 * 333.05061 * 19 17 15 40 40 H 1.09000 * 109.64453 * 93.33737 * 19 17 15 41 41 H 1.09000 * 109.94889 * 287.75888 * 20 19 17 42 42 H 1.09000 * 110.06939 * 166.41101 * 20 19 17 43 43 H 1.08999 * 110.78868 * 199.34369 * 21 20 19 44 44 H 1.09002 * 110.78631 * 75.88156 * 21 20 19 45 45 H 1.09002 * 109.58408 * 293.82123 * 25 14 13 46 46 H 1.09001 * 109.69981 * 173.47154 * 25 14 13 47 47 H 1.09001 * 109.49817 * 301.33925 * 26 11 2 48 48 H 1.09009 * 109.49734 * 61.39820 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1534 1.2298 0.3963 5 6 1.5538 2.3314 -0.5092 6 7 0.2986 2.3002 -0.9044 7 14 2.5331 3.9173 -0.6337 8 1 3.7105 3.7043 -1.5131 9 1 1.6748 4.9853 -1.2065 10 1 2.9924 4.3229 0.7189 11 6 2.1975 -1.2687 0.0006 12 6 1.8281 -2.0713 -1.2491 13 6 2.6220 -3.3814 -1.2628 14 7 2.3848 -4.0911 0.0016 15 6 1.9586 -5.3696 0.0020 16 8 1.8508 -5.9726 1.0488 17 6 1.6160 -6.0501 -1.2982 18 6 2.8668 -6.1934 -2.1675 19 6 0.5304 -5.2539 -2.0494 20 6 -0.3620 -6.2448 -2.8199 21 6 -0.7219 -7.3828 -1.8302 22 16 0.8724 -7.6907 -0.9799 23 8 1.6005 -8.6834 -1.6894 24 8 0.6441 -7.8417 0.4145 25 6 2.6216 -3.3805 1.2657 26 6 1.8280 -2.0702 1.2508 27 1 -0.3632 0.0913 -1.0236 28 1 -0.3633 0.8409 0.5907 29 1 -0.3634 -0.9321 0.4327 30 1 -0.1177 3.1007 -1.2606 31 1 3.2691 -1.0695 0.0009 32 1 0.7608 -2.2924 -1.2372 33 1 2.0698 -1.4903 -2.1391 34 1 3.6851 -3.1637 -1.3659 35 1 2.2934 -4.0014 -2.0970 36 1 3.5681 -6.8747 -1.6856 37 1 2.5875 -6.5902 -3.1435 38 1 3.3361 -5.2176 -2.2927 39 1 -0.0747 -4.6955 -1.3351 40 1 1.0008 -4.5619 -2.7479 41 1 0.1826 -6.6501 -3.6727 42 1 -1.2690 -5.7449 -3.1599 43 1 -1.0523 -8.2721 -2.3668 44 1 -1.4812 -7.0530 -1.1211 45 1 3.6846 -3.1627 1.3688 46 1 2.2923 -3.9978 2.1015 47 1 2.0696 -1.4885 2.1404 48 1 0.7606 -2.2909 1.2393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985694799.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:10:23 Heat of formation + Delta-G solvation = -57.794436 kcal Electronic energy + Delta-G solvation = -30533.630455 eV Core-core repulsion = 26524.625767 eV Total energy + Delta-G solvation = -4009.004689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.68003 -37.73095 -37.41195 -36.73804 -36.01237 -35.11985 -32.94005 -31.98525 -30.59566 -29.69488 -27.29362 -26.07269 -25.75204 -24.24848 -23.06562 -22.28203 -21.68135 -20.46912 -18.99119 -18.47215 -17.36281 -16.94130 -16.77403 -16.27184 -15.90558 -15.35490 -15.22633 -15.12646 -14.67366 -14.22579 -14.07945 -13.96612 -13.60546 -13.51629 -13.43234 -13.27117 -12.96557 -12.59973 -12.42196 -12.26537 -12.09720 -12.06907 -12.03138 -11.83414 -11.63973 -11.51977 -11.37137 -10.99720 -10.94025 -10.82439 -10.77458 -10.42765 -10.34054 -10.32212 -10.17937 -9.92960 -9.75131 -9.58733 -8.58754 -8.52196 -6.79180 -5.78231 -3.24851 -0.22426 2.30329 2.44303 2.85626 3.34039 3.39768 3.39950 3.40320 3.72853 3.98901 4.11891 4.24384 4.32594 4.42544 4.46426 4.61877 4.91688 5.06318 5.10643 5.14663 5.21401 5.22177 5.33027 5.35871 5.41148 5.41793 5.45218 5.52882 5.61966 5.67014 5.74698 5.84249 5.97486 6.10645 6.19474 6.30329 6.42622 6.52578 6.77194 6.91284 6.91799 7.36368 7.45982 7.70553 7.80806 8.04229 8.37521 9.21183 9.82580 10.32323 11.25846 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023326 B = 0.002949 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.109892 B = 9493.006898 C = 9808.998613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.168 3.832 2 N -0.599 5.599 3 C -0.256 4.256 4 H 0.067 0.933 5 C 0.006 3.994 6 N -0.909 5.909 7 Si 0.903 3.097 8 H -0.283 1.283 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.180 3.820 12 C -0.146 4.146 13 C 0.087 3.913 14 N -0.591 5.591 15 C 0.539 3.461 16 O -0.510 6.510 17 C -0.560 4.560 18 C -0.132 4.132 19 C -0.113 4.113 20 C -0.117 4.117 21 C -0.595 4.595 22 S 2.409 3.591 23 O -0.931 6.931 24 O -0.893 6.893 25 C 0.114 3.886 26 C -0.147 4.147 27 H 0.021 0.979 28 H 0.053 0.947 29 H -0.009 1.009 30 H 0.252 0.748 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.074 0.926 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.207 -17.469 -6.011 18.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.321 5.321 3 C -0.386 4.386 4 H 0.085 0.915 5 C -0.192 4.192 6 N -0.555 5.555 7 Si 0.733 3.267 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.071 3.929 12 C -0.187 4.187 13 C -0.035 4.035 14 N -0.324 5.324 15 C 0.323 3.677 16 O -0.385 6.385 17 C -0.650 4.650 18 C -0.190 4.190 19 C -0.151 4.151 20 C -0.155 4.155 21 C -0.725 4.725 22 S 2.587 3.413 23 O -0.928 6.928 24 O -0.890 6.890 25 C -0.008 4.008 26 C -0.188 4.188 27 H 0.039 0.961 28 H 0.071 0.929 29 H 0.009 0.991 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.126 0.874 41 H 0.107 0.893 42 H 0.120 0.880 43 H 0.156 0.844 44 H 0.158 0.842 45 H 0.085 0.915 46 H 0.107 0.893 47 H 0.093 0.907 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.387 -18.371 -5.017 19.048 hybrid contribution 0.075 1.849 -0.692 1.976 sum 0.463 -16.523 -5.710 17.487 Atomic orbital electron populations 1.20820 0.82527 0.95344 0.98958 1.43929 1.01887 1.00071 1.86218 1.19178 0.98950 0.86411 1.34022 0.91497 1.25131 0.96459 0.98677 0.98893 1.70083 1.10739 1.27997 1.46636 0.86361 0.79325 0.83096 0.77914 1.20993 1.21636 1.21042 1.20270 0.96003 0.86032 0.90555 1.22536 0.99901 0.94360 1.01872 1.22416 1.00710 0.94705 0.85688 1.47969 1.65076 1.11106 1.08292 1.19138 0.78186 0.82430 0.87981 1.90953 1.52470 1.63358 1.31757 1.30458 1.08005 1.22860 1.03699 1.21799 0.93369 1.04978 0.98852 1.22369 0.94160 0.98400 1.00171 1.22225 1.01644 0.94244 0.97434 1.30739 1.21097 1.08262 1.12379 1.09010 0.79049 0.76819 0.76430 1.93595 1.70465 1.53306 1.75472 1.93701 1.83846 1.83851 1.27573 1.21728 1.00023 0.93581 0.85463 1.22499 1.00257 0.94681 1.01325 0.96058 0.92874 0.99094 0.93712 0.91952 0.92021 0.90581 0.91251 0.88679 0.90720 0.89805 0.89189 0.88917 0.87377 0.89272 0.87967 0.84416 0.84248 0.91498 0.89324 0.90741 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 3.95 8.00 59.85 0.48 4.43 16 2 N -0.60 -13.99 2.82 -173.44 -0.49 -14.48 16 3 C -0.26 -6.69 9.59 -15.06 -0.14 -6.83 16 4 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 5 C 0.01 0.17 5.39 -17.43 -0.09 0.08 16 6 N -0.91 -25.41 10.09 55.49 0.56 -24.85 16 7 Si 0.90 21.07 29.56 -169.99 -5.02 16.05 16 8 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 C 0.18 3.28 2.55 -67.89 -0.17 3.11 16 12 C -0.15 -2.20 5.34 -26.61 -0.14 -2.35 16 13 C 0.09 1.00 4.50 -3.71 -0.02 0.98 16 14 N -0.59 -7.79 2.97 -172.77 -0.51 -8.30 16 15 C 0.54 7.44 6.39 -10.99 -0.07 7.37 16 16 O -0.51 -9.02 13.49 -18.42 -0.25 -9.27 16 17 C -0.56 -5.66 0.74 -91.17 -0.07 -5.72 16 18 C -0.13 -1.08 7.57 37.16 0.28 -0.80 16 19 C -0.11 -0.87 4.36 -25.59 -0.11 -0.98 16 20 C -0.12 -0.66 6.48 -25.12 -0.16 -0.82 16 21 C -0.60 -4.00 7.31 38.24 0.28 -3.73 16 22 S 2.41 26.72 5.75 -107.50 -0.62 26.10 16 23 O -0.93 -11.94 17.26 -57.73 -1.00 -12.94 16 24 O -0.89 -14.12 15.35 -67.13 -1.03 -15.15 16 25 C 0.11 1.62 6.41 -3.71 -0.02 1.59 16 26 C -0.15 -2.40 5.32 -26.62 -0.14 -2.54 16 27 H 0.02 0.53 7.49 -51.93 -0.39 0.15 16 28 H 0.05 1.39 6.95 -51.93 -0.36 1.03 16 29 H -0.01 -0.20 6.46 -51.93 -0.34 -0.53 16 30 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.06 1.16 7.88 -51.93 -0.41 0.75 16 32 H 0.06 0.96 7.72 -51.93 -0.40 0.56 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.83 2.35 -51.93 -0.12 0.71 16 36 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.65 5.15 -51.93 -0.27 0.38 16 39 H 0.09 0.81 7.85 -51.93 -0.41 0.40 16 40 H 0.11 0.69 5.93 -51.93 -0.31 0.38 16 41 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.14 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.09 1.32 7.04 -51.93 -0.37 0.95 16 47 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 48 H 0.06 1.08 6.72 -51.92 -0.35 0.73 16 LS Contribution 367.61 15.07 5.54 5.54 Total: -1.00 -35.10 367.61 -10.41 -45.52 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -7.49 Total: -2.02 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -0.11 Total: -6.20 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.44 Total: -47.63 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -2.28 Total: -37.35 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 26.72 SS G_CDS: -0.62 Total: 26.10 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.10 -10.41 -45.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985694799.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.277 kcal (2) G-P(sol) polarization free energy of solvation -35.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds