Wall clock time and date at job start Sat Apr 11 2020 07:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36935 * 120.00256 * 2 1 4 4 H 1.07995 * 119.99712 * 154.93271 * 3 2 1 5 5 C 1.38808 * 119.99753 * 334.93869 * 3 2 1 6 6 N 1.31622 * 120.00485 * 4.82377 * 5 3 2 7 7 Si 1.86804 * 119.99727 * 184.82677 * 5 3 2 8 8 H 1.48498 * 109.47536 * 59.99697 * 7 5 3 9 9 H 1.48505 * 109.47040 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47161 * 299.99395 * 7 5 3 11 11 C 1.46496 * 119.99716 * 179.97438 * 2 1 3 12 12 C 1.53042 * 109.46225 * 60.02821 * 11 2 1 13 13 C 1.53194 * 109.31231 * 178.59811 * 12 11 2 14 14 N 1.46925 * 108.76424 * 54.66241 * 13 12 11 15 15 C 1.34776 * 120.63251 * 126.40316 * 14 13 12 16 16 O 1.21281 * 119.99723 * 175.14162 * 15 14 13 17 17 C 1.50697 * 119.99817 * 355.14595 * 15 14 13 18 18 C 1.52997 * 110.28561 * 65.01199 * 17 15 14 19 19 C 1.54164 * 110.32096 * 302.89063 * 17 15 14 20 20 C 1.54013 * 108.63475 * 213.27257 * 19 17 15 21 21 C 1.55055 * 106.69727 * 47.04969 * 20 19 17 22 22 S 1.82923 * 110.31621 * 187.12272 * 17 15 14 23 23 O 1.42094 * 109.35361 * 234.42380 * 22 17 15 24 24 O 1.42101 * 109.35268 * 7.49424 * 22 17 15 25 25 C 1.46930 * 118.73487 * 306.37942 * 14 13 12 26 26 C 1.53038 * 109.46313 * 299.97578 * 11 2 1 27 27 H 1.09001 * 109.46592 * 84.90419 * 1 2 3 28 28 H 1.08999 * 109.47143 * 324.91142 * 1 2 3 29 29 H 1.08997 * 109.47438 * 204.90507 * 1 2 3 30 30 H 0.97000 * 120.00127 * 180.02562 * 6 5 3 31 31 H 1.08999 * 109.46310 * 180.02562 * 11 2 1 32 32 H 1.09001 * 109.49881 * 298.56890 * 12 11 2 33 33 H 1.09005 * 109.49198 * 58.66453 * 12 11 2 34 34 H 1.09002 * 109.60054 * 294.86622 * 13 12 11 35 35 H 1.09004 * 109.69906 * 174.50487 * 13 12 11 36 36 H 1.08997 * 109.47287 * 65.89911 * 18 17 15 37 37 H 1.08999 * 109.47083 * 185.89711 * 18 17 15 38 38 H 1.09000 * 109.47034 * 305.89896 * 18 17 15 39 39 H 1.09002 * 109.64666 * 333.05061 * 19 17 15 40 40 H 1.09000 * 109.64453 * 93.33737 * 19 17 15 41 41 H 1.09000 * 109.94889 * 287.75888 * 20 19 17 42 42 H 1.09000 * 110.06939 * 166.41101 * 20 19 17 43 43 H 1.08999 * 110.78868 * 199.34369 * 21 20 19 44 44 H 1.09002 * 110.78631 * 75.88156 * 21 20 19 45 45 H 1.09002 * 109.58408 * 293.82123 * 25 14 13 46 46 H 1.09001 * 109.69981 * 173.47154 * 25 14 13 47 47 H 1.09001 * 109.49817 * 301.33925 * 26 11 2 48 48 H 1.09009 * 109.49734 * 61.39820 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1534 1.2298 0.3963 5 6 1.5538 2.3314 -0.5092 6 7 0.2986 2.3002 -0.9044 7 14 2.5331 3.9173 -0.6337 8 1 3.7105 3.7043 -1.5131 9 1 1.6748 4.9853 -1.2065 10 1 2.9924 4.3229 0.7189 11 6 2.1975 -1.2687 0.0006 12 6 1.8281 -2.0713 -1.2491 13 6 2.6220 -3.3814 -1.2628 14 7 2.3848 -4.0911 0.0016 15 6 1.9586 -5.3696 0.0020 16 8 1.8508 -5.9726 1.0488 17 6 1.6160 -6.0501 -1.2982 18 6 2.8668 -6.1934 -2.1675 19 6 0.5304 -5.2539 -2.0494 20 6 -0.3620 -6.2448 -2.8199 21 6 -0.7219 -7.3828 -1.8302 22 16 0.8724 -7.6907 -0.9799 23 8 1.6005 -8.6834 -1.6894 24 8 0.6441 -7.8417 0.4145 25 6 2.6216 -3.3805 1.2657 26 6 1.8280 -2.0702 1.2508 27 1 -0.3632 0.0913 -1.0236 28 1 -0.3633 0.8409 0.5907 29 1 -0.3634 -0.9321 0.4327 30 1 -0.1177 3.1007 -1.2606 31 1 3.2691 -1.0695 0.0009 32 1 0.7608 -2.2924 -1.2372 33 1 2.0698 -1.4903 -2.1391 34 1 3.6851 -3.1637 -1.3659 35 1 2.2934 -4.0014 -2.0970 36 1 3.5681 -6.8747 -1.6856 37 1 2.5875 -6.5902 -3.1435 38 1 3.3361 -5.2176 -2.2927 39 1 -0.0747 -4.6955 -1.3351 40 1 1.0008 -4.5619 -2.7479 41 1 0.1826 -6.6501 -3.6727 42 1 -1.2690 -5.7449 -3.1599 43 1 -1.0523 -8.2721 -2.3668 44 1 -1.4812 -7.0530 -1.1211 45 1 3.6846 -3.1627 1.3688 46 1 2.2923 -3.9978 2.1015 47 1 2.0696 -1.4885 2.1404 48 1 0.7606 -2.2909 1.2393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985694799.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:10:23 Heat of formation + Delta-G solvation = -82.051304 kcal Electronic energy + Delta-G solvation = -30534.682312 eV Core-core repulsion = 26524.625767 eV Total energy + Delta-G solvation = -4010.056545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.73606 -39.08178 -38.27740 -37.56788 -36.94265 -36.67359 -34.08775 -33.26882 -31.73451 -31.30720 -28.02363 -27.88497 -26.91232 -25.34380 -24.24968 -23.65861 -22.41875 -21.69391 -20.17800 -19.48247 -18.78450 -18.22657 -17.73878 -17.24301 -16.91879 -16.80232 -16.33203 -16.17692 -15.71268 -15.48184 -15.10631 -15.03404 -14.89171 -14.75241 -14.49535 -14.31054 -13.90461 -13.82027 -13.56890 -13.28615 -13.24264 -13.12325 -13.00738 -12.84551 -12.80018 -12.63303 -12.60939 -12.46890 -12.24231 -12.21815 -12.06202 -11.88224 -11.82129 -11.68508 -11.45119 -11.20694 -11.13626 -10.68675 -10.55388 -9.70672 -8.70412 -7.80014 -5.27205 -1.00381 1.39610 1.49350 1.49829 1.56249 1.56429 1.83669 2.52062 2.65124 2.88140 3.29880 3.33705 3.37110 3.62701 3.65720 3.68990 3.80958 3.93250 4.09136 4.14220 4.17735 4.29955 4.39007 4.48482 4.56757 4.57520 4.65606 4.68233 4.72333 4.79036 4.83718 4.94272 4.99221 5.01789 5.03526 5.08430 5.12249 5.20301 5.31246 5.42809 5.53302 5.60459 5.70275 5.81829 6.29037 6.38853 6.97699 7.21274 7.93289 8.37396 9.22659 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023326 B = 0.002949 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.109892 B = 9493.006898 C = 9808.998613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.188 3.812 2 N -0.615 5.615 3 C -0.262 4.262 4 H 0.070 0.930 5 C -0.047 4.047 6 N -0.938 5.938 7 Si 0.964 3.036 8 H -0.275 1.275 9 H -0.297 1.297 10 H -0.282 1.282 11 C 0.173 3.827 12 C -0.135 4.135 13 C 0.094 3.906 14 N -0.591 5.591 15 C 0.534 3.466 16 O -0.555 6.555 17 C -0.550 4.550 18 C -0.138 4.138 19 C -0.116 4.116 20 C -0.114 4.114 21 C -0.565 4.565 22 S 2.386 3.614 23 O -0.958 6.958 24 O -0.957 6.957 25 C 0.120 3.880 26 C -0.134 4.134 27 H 0.001 0.999 28 H 0.018 0.982 29 H 0.015 0.985 30 H 0.246 0.754 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.130 0.870 36 H 0.061 0.939 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.129 0.871 41 H 0.116 0.884 42 H 0.126 0.874 43 H 0.166 0.834 44 H 0.148 0.852 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.063 0.937 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.543 -18.073 -8.627 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.337 5.337 3 C -0.393 4.393 4 H 0.088 0.912 5 C -0.242 4.242 6 N -0.585 5.585 7 Si 0.793 3.207 8 H -0.201 1.201 9 H -0.223 1.223 10 H -0.208 1.208 11 C 0.067 3.933 12 C -0.175 4.175 13 C -0.028 4.028 14 N -0.323 5.323 15 C 0.320 3.680 16 O -0.433 6.433 17 C -0.641 4.641 18 C -0.195 4.195 19 C -0.155 4.155 20 C -0.152 4.152 21 C -0.698 4.698 22 S 2.571 3.429 23 O -0.955 6.955 24 O -0.954 6.954 25 C -0.003 4.003 26 C -0.174 4.174 27 H 0.019 0.981 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.147 0.853 36 H 0.080 0.920 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.100 0.900 40 H 0.147 0.853 41 H 0.134 0.866 42 H 0.144 0.856 43 H 0.184 0.816 44 H 0.166 0.834 45 H 0.101 0.899 46 H 0.097 0.903 47 H 0.081 0.919 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.789 -19.023 -7.618 20.507 hybrid contribution -0.054 2.024 0.157 2.031 sum 0.736 -16.999 -7.461 18.579 Atomic orbital electron populations 1.20451 0.83098 0.94955 0.97161 1.44139 1.01852 1.01245 1.86491 1.19513 0.98995 0.87664 1.33078 0.91230 1.25805 0.97299 1.01631 0.99447 1.70255 1.11977 1.28248 1.47982 0.85396 0.78029 0.79481 0.77823 1.20071 1.22325 1.20777 1.20501 0.95389 0.84667 0.92780 1.22318 1.00231 0.95494 0.99436 1.22538 1.01230 0.93127 0.85887 1.48026 1.64758 1.11118 1.08426 1.19747 0.77092 0.82292 0.88886 1.90944 1.54075 1.64375 1.33910 1.30333 1.09790 1.21823 1.02196 1.21961 0.92241 1.05665 0.99675 1.22516 0.93700 0.98981 1.00272 1.22388 1.02467 0.93127 0.97242 1.30575 1.16766 1.10262 1.12237 1.09353 0.80898 0.77088 0.75586 1.93551 1.72197 1.54618 1.75180 1.93629 1.85147 1.84969 1.31614 1.21577 1.00439 0.92183 0.86097 1.22301 0.99766 0.95368 0.99966 0.98066 0.96347 0.96717 0.94440 0.92101 0.92412 0.91306 0.89537 0.85302 0.91964 0.86824 0.87863 0.90044 0.85286 0.86575 0.85590 0.81613 0.83366 0.89911 0.90346 0.91859 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 8.98 8.00 127.77 1.02 10.01 16 2 N -0.61 -28.69 2.82 -702.64 -1.98 -30.67 16 3 C -0.26 -13.69 9.59 84.03 0.81 -12.89 16 4 H 0.07 3.52 7.81 -2.91 -0.02 3.50 16 5 C -0.05 -2.53 5.39 84.86 0.46 -2.07 16 6 N -0.94 -53.29 10.09 21.65 0.22 -53.07 16 7 Si 0.96 43.40 29.56 68.60 2.03 45.43 16 8 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 9 H -0.30 -13.57 7.11 99.48 0.71 -12.87 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 C 0.17 6.16 2.55 45.02 0.11 6.27 16 12 C -0.13 -3.78 5.34 30.67 0.16 -3.62 16 13 C 0.09 1.86 4.50 86.36 0.39 2.24 16 14 N -0.59 -14.64 2.97 -818.90 -2.43 -17.07 16 15 C 0.53 14.33 6.39 87.66 0.56 14.89 16 16 O -0.55 -20.18 13.49 19.89 0.27 -19.92 16 17 C -0.55 -9.94 0.74 -11.15 -0.01 -9.95 16 18 C -0.14 -1.83 7.57 71.98 0.54 -1.28 16 19 C -0.12 -1.35 4.36 31.33 0.14 -1.21 16 20 C -0.11 -0.71 6.48 31.64 0.20 -0.50 16 21 C -0.56 -5.63 7.31 72.69 0.53 -5.10 16 22 S 2.39 51.01 5.75 -56.49 -0.32 50.69 16 23 O -0.96 -23.85 17.26 -127.47 -2.20 -26.05 16 24 O -0.96 -31.59 15.35 -118.48 -1.82 -33.41 16 25 C 0.12 3.32 6.41 86.36 0.55 3.87 16 26 C -0.13 -4.32 5.32 30.67 0.16 -4.15 16 27 H 0.00 0.05 7.49 -2.39 -0.02 0.04 16 28 H 0.02 0.97 6.95 -2.39 -0.02 0.96 16 29 H 0.01 0.61 6.46 -2.39 -0.02 0.60 16 30 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 31 H 0.06 2.18 7.88 -2.39 -0.02 2.16 16 32 H 0.06 1.68 7.72 -2.39 -0.02 1.66 16 33 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.13 1.70 2.35 -2.39 -0.01 1.70 16 36 H 0.06 1.01 8.12 -2.39 -0.02 0.99 16 37 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.10 1.06 5.15 -2.39 -0.01 1.05 16 39 H 0.08 1.18 7.85 -2.39 -0.02 1.17 16 40 H 0.13 0.97 5.93 -2.39 -0.01 0.96 16 41 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.17 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.15 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.08 2.37 7.04 -2.39 -0.02 2.35 16 47 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.05 1.74 6.72 -2.38 -0.02 1.72 16 Total: -1.00 -80.62 367.61 0.36 -80.26 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 0.96 Total: 7.28 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 5.64 Total: -3.47 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -4.19 Total: -100.81 kcal Atomic # 8 Polarization: -75.63 SS G_CDS: -3.75 Total: -79.38 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 51.01 SS G_CDS: -0.32 Total: 50.69 kcal Total: -80.62 0.36 -80.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985694799.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.788 kcal (2) G-P(sol) polarization free energy of solvation -80.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds