Wall clock time and date at job start Sat Apr 11 2020 07:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 110.79832 * 2 1 4 4 C 1.55204 * 110.77825 * 236.58019 * 2 1 3 5 5 N 1.48113 * 103.26534 * 279.11178 * 4 2 1 6 6 C 1.34783 * 127.03347 * 140.65137 * 5 4 2 7 7 O 1.21279 * 119.99871 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00254 * 180.02562 * 6 5 4 9 9 H 1.09008 * 109.54439 * 39.80514 * 8 6 5 10 10 C 1.53032 * 109.54796 * 279.51889 * 8 6 5 11 11 C 1.52588 * 109.98779 * 176.49478 * 10 8 6 12 12 C 1.52585 * 110.64168 * 69.98194 * 11 10 8 13 13 C 1.53039 * 109.98882 * 290.01873 * 12 11 10 14 14 S 1.81662 * 108.99895 * 63.64743 * 13 12 11 15 15 O 1.42106 * 108.66452 * 191.37459 * 14 13 12 16 16 O 1.42095 * 108.66529 * 60.03170 * 14 13 12 17 17 C 1.47480 * 105.93563 * 320.68574 * 5 4 2 18 18 C 1.54008 * 107.08104 * 25.44791 * 17 5 4 19 19 H 1.08996 * 110.32677 * 117.69295 * 18 17 5 20 20 N 1.46504 * 110.32387 * 239.80403 * 18 17 5 21 21 C 1.36943 * 119.99781 * 272.16437 * 20 18 17 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99622 * 180.27904 * 21 20 18 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48501 * 109.46896 * 89.99850 * 25 23 21 27 27 H 1.48499 * 109.47039 * 210.00011 * 25 23 21 28 28 H 1.48501 * 109.47275 * 329.99811 * 25 23 21 29 29 H 1.08998 * 109.47480 * 296.71225 * 1 2 3 30 30 H 1.09005 * 109.46776 * 56.70798 * 1 2 3 31 31 H 1.09001 * 109.47332 * 176.70631 * 1 2 3 32 32 H 1.09002 * 109.47186 * 183.28868 * 3 2 1 33 33 H 1.08996 * 109.47263 * 303.28784 * 3 2 1 34 34 H 1.09001 * 109.46923 * 63.28904 * 3 2 1 35 35 H 1.08999 * 110.67487 * 160.65698 * 4 2 1 36 36 H 1.09002 * 110.63973 * 37.54748 * 4 2 1 37 37 H 1.09001 * 109.38754 * 296.65441 * 10 8 6 38 38 H 1.09007 * 109.38930 * 56.33863 * 10 8 6 39 39 H 1.09006 * 109.24247 * 309.68952 * 11 10 8 40 40 H 1.08996 * 109.21733 * 190.26454 * 11 10 8 41 41 H 1.09001 * 109.38779 * 169.85707 * 12 11 10 42 42 H 1.09002 * 109.38318 * 50.17443 * 12 11 10 43 43 H 1.08999 * 109.54875 * 303.79173 * 13 12 11 44 44 H 1.09003 * 109.54845 * 183.50684 * 13 12 11 45 45 H 1.09000 * 109.91442 * 266.08891 * 17 5 4 46 46 H 1.08995 * 109.91491 * 144.80830 * 17 5 4 47 47 H 0.97000 * 120.00410 * 92.16762 * 20 18 17 48 48 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0733 1.4303 0.0000 4 6 2.0806 -0.7992 -1.2112 5 7 1.9878 -2.2069 -0.7600 6 6 1.6226 -3.2736 -1.4985 7 8 1.3267 -3.1303 -2.6659 8 6 1.5822 -4.6444 -0.8738 9 1 1.1793 -4.5730 0.1366 10 6 2.9967 -5.2261 -0.8233 11 6 2.9802 -6.5770 -0.1140 12 6 2.2811 -7.6269 -0.9727 13 6 0.7809 -7.3323 -1.0411 14 16 0.5287 -5.7368 -1.8724 15 8 -0.8260 -5.3436 -1.7007 16 8 1.0704 -5.8167 -3.1837 17 6 2.3757 -2.2025 0.6628 18 6 2.0774 -0.7937 1.2087 19 1 1.3285 -0.8445 1.9990 20 7 3.3052 -0.1723 1.7116 21 6 3.6952 -0.3780 3.0081 22 1 3.0975 -0.9979 3.6599 23 6 4.8555 0.2154 3.4862 24 7 5.5835 0.9713 2.6920 25 14 5.3834 -0.0589 5.2569 26 1 6.2602 -1.2551 5.3323 27 1 6.1273 1.1315 5.7417 28 1 4.1826 -0.2711 6.1043 29 1 -0.3634 0.4619 0.9179 30 1 -0.3633 0.5641 -0.8591 31 1 -0.3634 -1.0260 -0.0590 32 1 3.1615 1.4057 -0.0590 33 1 1.6751 1.9702 -0.8590 34 1 1.7705 1.9339 0.9180 35 1 3.1168 -0.5275 -1.4126 36 1 1.4608 -0.6362 -2.0928 37 1 3.3713 -5.3552 -1.8387 38 1 3.6504 -4.5416 -0.2825 39 1 2.4515 -6.4785 0.8341 40 1 4.0052 -6.8942 0.0776 41 1 2.4365 -8.6134 -0.5361 42 1 2.6996 -7.6083 -1.9790 43 1 0.3718 -7.2863 -0.0318 44 1 0.2798 -8.1200 -1.6037 45 1 3.4395 -2.4201 0.7583 46 1 1.7921 -2.9435 1.2091 47 1 3.8418 0.3848 1.1263 48 1 6.3945 1.3857 3.0260 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995880400.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:10:36 Heat of formation + Delta-G solvation = -90.513084 kcal Electronic energy + Delta-G solvation = -30199.907419 eV Core-core repulsion = 26189.483944 eV Total energy + Delta-G solvation = -4010.423476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.29822 -38.35233 -37.44187 -36.75039 -36.05189 -34.18480 -33.35681 -32.13041 -30.88836 -28.57756 -27.86347 -26.83566 -26.07257 -24.28688 -23.84221 -21.77514 -21.35703 -19.74273 -18.91500 -18.61161 -17.50882 -17.18020 -16.96695 -16.30307 -15.90075 -15.63606 -15.39222 -14.87679 -14.74194 -14.40585 -14.15215 -13.94730 -13.92455 -13.70557 -13.23336 -13.10583 -12.75317 -12.53528 -12.28547 -12.15097 -12.09524 -12.07042 -11.87867 -11.81042 -11.73939 -11.69774 -11.43591 -11.29881 -11.02877 -10.99091 -10.84707 -10.61476 -10.52299 -10.42175 -10.29597 -9.95427 -9.87699 -9.70954 -9.09191 -8.49826 -7.16068 -5.92166 -3.22598 -0.24273 2.45224 2.53476 2.89165 3.32775 3.38917 3.40759 3.60478 3.72935 4.16636 4.19417 4.25745 4.45295 4.46010 4.55623 4.61716 4.85407 4.87430 5.02106 5.06025 5.16400 5.19428 5.38898 5.40719 5.42556 5.54441 5.57371 5.61556 5.68670 5.72236 5.82363 5.83658 5.92319 6.02326 6.08874 6.19681 6.25569 6.27994 6.36553 6.39662 6.55300 6.75353 6.89075 7.55779 7.62521 8.03916 8.26064 9.38074 9.92126 10.27097 11.29808 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013460 B = 0.003580 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.705110 B = 7819.550304 C = 9193.596484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 C -0.124 4.124 4 C 0.115 3.885 5 N -0.598 5.598 6 C 0.557 3.443 7 O -0.539 6.539 8 C -0.601 4.601 9 H 0.154 0.846 10 C -0.100 4.100 11 C -0.138 4.138 12 C -0.112 4.112 13 C -0.611 4.611 14 S 2.445 3.555 15 O -0.934 6.934 16 O -0.910 6.910 17 C 0.070 3.930 18 C 0.175 3.825 19 H 0.068 0.932 20 N -0.714 5.714 21 C -0.249 4.249 22 H 0.071 0.929 23 C -0.006 4.006 24 N -0.929 5.929 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.281 1.281 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.082 0.918 46 H 0.062 0.938 47 H 0.389 0.611 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.563 -14.190 -5.196 16.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.090 4.090 3 C -0.182 4.182 4 C -0.007 4.007 5 N -0.330 5.330 6 C 0.343 3.657 7 O -0.418 6.418 8 C -0.709 4.709 9 H 0.172 0.828 10 C -0.139 4.139 11 C -0.176 4.176 12 C -0.150 4.150 13 C -0.740 4.740 14 S 2.623 3.377 15 O -0.931 6.931 16 O -0.907 6.907 17 C -0.055 4.055 18 C 0.063 3.937 19 H 0.086 0.914 20 N -0.356 5.356 21 C -0.380 4.380 22 H 0.089 0.911 23 C -0.203 4.203 24 N -0.576 5.576 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.152 0.848 44 H 0.154 0.846 45 H 0.101 0.899 46 H 0.080 0.920 47 H 0.226 0.774 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.206 -13.977 -6.375 17.417 hybrid contribution 1.022 -0.248 1.842 2.121 sum -7.184 -14.225 -4.533 16.568 Atomic orbital electron populations 1.21730 0.93952 1.01500 1.01716 1.21994 0.95574 0.96231 0.95244 1.21581 1.01700 0.93554 1.01346 1.22698 1.01456 0.78970 0.97558 1.48642 1.64514 1.07133 1.12715 1.18669 0.77893 0.83616 0.85570 1.90847 1.50469 1.85055 1.15412 1.30650 1.14302 1.08661 1.17327 0.82821 1.21301 0.91489 0.97168 1.03937 1.21714 1.03217 0.93293 0.99360 1.21322 0.89875 1.01233 1.02561 1.30369 1.05869 1.22667 1.15107 1.07674 0.75546 0.77829 0.76695 1.93580 1.31467 1.81318 1.86761 1.93578 1.79950 1.85141 1.32003 1.23615 1.01000 1.02013 0.78907 1.21097 0.90532 0.88854 0.93254 0.91444 1.42631 1.23744 1.57809 1.11395 1.19228 1.05304 1.25521 0.87937 0.91095 1.24734 0.97797 0.99750 0.98013 1.69643 1.16846 1.36028 1.35061 0.86218 0.78335 0.77175 0.84571 1.21694 1.21727 1.20710 0.92199 0.92748 0.92944 0.91404 0.93638 0.91625 0.90481 0.90122 0.89151 0.88555 0.90324 0.89049 0.89336 0.89532 0.84794 0.84620 0.89946 0.91994 0.77419 0.93308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 8.50 37.16 0.32 -1.49 16 2 C -0.09 -1.36 0.94 -152.49 -0.14 -1.50 16 3 C -0.12 -1.94 7.84 37.16 0.29 -1.65 16 4 C 0.12 1.80 5.99 -1.99 -0.01 1.79 16 5 N -0.60 -9.33 3.19 -169.60 -0.54 -9.88 16 6 C 0.56 8.91 7.07 -10.98 -0.08 8.83 16 7 O -0.54 -10.48 15.63 -9.30 -0.15 -10.62 16 8 C -0.60 -6.98 2.27 -27.87 -0.06 -7.04 16 9 H 0.15 1.35 6.99 -51.92 -0.36 0.99 16 10 C -0.10 -0.96 5.00 -26.93 -0.13 -1.10 16 11 C -0.14 -0.90 5.63 -27.15 -0.15 -1.05 16 12 C -0.11 -0.68 5.73 -26.92 -0.15 -0.84 16 13 C -0.61 -4.14 6.35 37.18 0.24 -3.90 16 14 S 2.45 29.67 4.25 -107.50 -0.46 29.21 16 15 O -0.93 -14.45 18.10 -57.81 -1.05 -15.50 16 16 O -0.91 -14.22 17.11 -64.26 -1.10 -15.31 16 17 C 0.07 1.09 6.23 -2.98 -0.02 1.07 16 18 C 0.18 3.05 3.09 -66.56 -0.21 2.85 16 19 H 0.07 1.19 7.82 -51.93 -0.41 0.79 16 20 N -0.71 -15.63 4.48 -52.09 -0.23 -15.87 16 21 C -0.25 -6.18 9.96 -15.06 -0.15 -6.33 16 22 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 23 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 24 N -0.93 -25.96 13.06 55.49 0.72 -25.23 16 25 Si 0.91 20.81 29.55 -169.99 -5.02 15.79 16 26 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.73 8.07 -51.93 -0.42 0.32 16 32 H 0.07 1.19 6.25 -51.93 -0.32 0.86 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 1.23 8.02 -51.93 -0.42 0.82 16 36 H 0.08 1.26 7.76 -51.93 -0.40 0.85 16 37 H 0.09 0.90 8.01 -51.93 -0.42 0.49 16 38 H 0.10 0.98 7.72 -51.92 -0.40 0.58 16 39 H 0.08 0.42 8.09 -51.93 -0.42 0.00 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.55 8.01 -51.93 -0.42 0.14 16 43 H 0.13 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.14 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 1.41 7.82 -51.93 -0.41 1.00 16 46 H 0.06 0.82 6.97 -51.93 -0.36 0.46 16 47 H 0.39 9.11 5.58 -40.82 -0.23 8.88 16 48 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 385.19 15.07 5.80 5.80 Total: -1.00 -34.34 385.19 -10.29 -44.63 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -7.91 Total: 7.60 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -0.36 Total: -10.62 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.05 Total: -50.98 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -2.29 Total: -41.44 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 29.67 SS G_CDS: -0.46 Total: 29.21 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.34 -10.29 -44.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995880400.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.882 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds