Wall clock time and date at job start Sat Apr 11 2020 07:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42898 * 109.47537 * 2 1 4 4 C 1.42902 * 114.00516 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.46985 * 179.97438 * 4 3 2 6 6 O 1.21285 * 120.00580 * 359.97438 * 5 4 3 7 7 N 1.34780 * 120.00027 * 179.97438 * 5 4 3 8 8 C 1.46928 * 120.62810 * 5.55819 * 7 5 4 9 9 C 1.53190 * 108.77834 * 233.62996 * 8 7 5 10 10 C 1.53033 * 109.31464 * 305.36851 * 9 8 7 11 11 C 1.53043 * 109.53914 * 61.35911 * 10 9 8 12 12 C 1.46923 * 120.63354 * 185.58558 * 7 5 4 13 13 H 1.09001 * 109.69994 * 246.22768 * 12 7 5 14 14 C 1.53003 * 109.58662 * 6.57657 * 12 7 5 15 15 N 1.46501 * 109.46793 * 178.12512 * 14 12 7 16 16 C 1.34776 * 119.99780 * 185.03849 * 15 14 12 17 17 O 1.21290 * 119.99867 * 359.97438 * 16 15 14 18 18 C 1.50693 * 120.00167 * 180.02562 * 16 15 14 19 19 S 1.80999 * 109.47312 * 179.97438 * 18 16 15 20 20 C 1.76201 * 100.00207 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99870 * 0.02562 * 20 19 18 22 22 C 1.38804 * 120.00044 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99867 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99773 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47253 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47165 * 120.00265 * 24 22 20 27 27 H 1.48506 * 109.47260 * 239.99942 * 24 22 20 28 28 H 1.09003 * 109.47067 * 60.00564 * 1 2 3 29 29 H 1.09004 * 109.47592 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47432 * 300.00113 * 1 2 3 31 31 H 1.09006 * 109.47756 * 239.99635 * 2 1 3 32 32 H 1.09003 * 109.47067 * 119.99436 * 2 1 3 33 33 H 1.08994 * 109.46814 * 59.99511 * 4 3 2 34 34 H 1.08997 * 109.46585 * 299.99862 * 4 3 2 35 35 H 1.09000 * 109.58740 * 353.41973 * 8 7 5 36 36 H 1.08999 * 109.58915 * 113.84205 * 8 7 5 37 37 H 1.09001 * 109.49982 * 185.41043 * 9 8 7 38 38 H 1.09009 * 109.49606 * 65.31404 * 9 8 7 39 39 H 1.09005 * 109.46159 * 301.34318 * 10 9 8 40 40 H 1.08999 * 109.46309 * 181.38198 * 10 9 8 41 41 H 1.09000 * 109.49590 * 58.59076 * 11 10 9 42 42 H 1.09003 * 109.49697 * 178.65222 * 11 10 9 43 43 H 1.08995 * 109.46903 * 298.12767 * 14 12 7 44 44 H 1.09001 * 109.46860 * 58.12711 * 14 12 7 45 45 H 0.96998 * 120.00013 * 5.03658 * 15 14 12 46 46 H 1.08997 * 109.47597 * 299.99646 * 18 16 15 47 47 H 1.09006 * 109.47314 * 59.99751 * 18 16 15 48 48 H 0.96999 * 119.99359 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8194 2.9161 -0.0001 6 8 2.9610 3.7729 -0.0015 7 7 5.1209 3.2663 0.0008 8 6 6.1708 2.2456 -0.1200 9 6 7.1528 2.4080 1.0444 10 6 7.6746 3.8464 1.0696 11 6 6.5061 4.8111 1.2849 12 6 5.5168 4.6759 0.1232 13 1 5.9911 5.0059 -0.8010 14 6 4.2804 5.5337 0.3998 15 7 4.6837 6.9323 0.5657 16 6 3.7714 7.8593 0.9191 17 8 2.6165 7.5357 1.0992 18 6 4.1861 9.2980 1.0893 19 16 2.7470 10.2888 1.5620 20 6 3.4981 11.8776 1.6903 21 1 4.5536 11.9933 1.4932 22 6 2.7332 12.9803 2.0448 23 7 1.4468 12.8390 2.2855 24 14 3.5294 14.6646 2.1800 25 1 4.9756 14.5556 1.8610 26 1 2.8808 15.5970 1.2233 27 1 3.3645 15.1805 3.5628 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8901 33 1 3.8340 0.9764 -0.8891 34 1 3.8332 0.9767 0.8908 35 1 5.7215 1.2531 -0.0834 36 1 6.6993 2.3749 -1.0644 37 1 7.9883 1.7201 0.9145 38 1 6.6435 2.1894 1.9831 39 1 8.1621 4.0726 0.1212 40 1 8.3923 3.9583 1.8823 41 1 6.0030 4.5698 2.2212 42 1 6.8815 5.8336 1.3266 43 1 3.5871 5.4523 -0.4373 44 1 3.7930 5.1856 1.3105 45 1 5.6073 7.1911 0.4214 46 1 4.9467 9.3675 1.8669 47 1 4.5920 9.6728 0.1496 48 1 0.9123 13.6097 2.5328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001061983309.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:43 Heat of formation + Delta-G solvation = -107.577570 kcal Electronic energy + Delta-G solvation = -28000.383893 eV Core-core repulsion = 23989.220446 eV Total energy + Delta-G solvation = -4011.163447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.01246 -38.92674 -38.34267 -37.38507 -34.83146 -33.33258 -32.36556 -32.05974 -31.50045 -29.24043 -28.30714 -26.19338 -25.38635 -24.87034 -23.18109 -22.31783 -21.43399 -20.31152 -19.31232 -17.92039 -17.48981 -17.08501 -16.86461 -16.32011 -15.91126 -15.59064 -15.31982 -15.06111 -14.80443 -14.74995 -14.54762 -14.25392 -14.09377 -13.85992 -13.67918 -13.11841 -13.05555 -12.99484 -12.72597 -12.65233 -12.48335 -12.33685 -11.78448 -11.75019 -11.58030 -11.43440 -11.35940 -11.18120 -11.02705 -11.02027 -10.94543 -10.70039 -10.08022 -9.74055 -9.56899 -9.13460 -9.02742 -9.00978 -8.54440 -8.12990 -6.41463 -6.15154 -3.84746 2.21923 2.32194 3.14572 3.25453 3.30941 3.31404 3.35106 3.47604 3.92873 4.11373 4.22031 4.26607 4.36941 4.41304 4.56374 4.60128 4.64087 4.77776 4.79570 4.81308 4.85932 4.97818 5.02265 5.05668 5.19589 5.25285 5.30001 5.31967 5.40174 5.43256 5.58161 5.60729 5.62298 5.75149 5.83727 5.86558 5.98029 5.98119 6.10572 6.23195 6.44003 6.66243 6.80061 7.02011 7.65932 7.88362 7.92881 8.41807 8.83028 9.29867 10.92322 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013952 B = 0.002212 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.340902 B =12654.793890 C =14467.928125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.362 6.362 4 C 0.047 3.953 5 C 0.509 3.491 6 O -0.491 6.491 7 N -0.610 5.610 8 C 0.108 3.892 9 C -0.137 4.137 10 C -0.120 4.120 11 C -0.135 4.135 12 C 0.139 3.861 13 H 0.080 0.920 14 C 0.126 3.874 15 N -0.744 5.744 16 C 0.530 3.470 17 O -0.511 6.511 18 C -0.152 4.152 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.072 3.928 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.074 0.926 45 H 0.391 0.609 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.419 -30.519 -5.773 34.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.280 6.280 4 C -0.033 4.033 5 C 0.296 3.704 6 O -0.363 6.363 7 N -0.347 5.347 8 C -0.015 4.015 9 C -0.175 4.175 10 C -0.157 4.157 11 C -0.173 4.173 12 C 0.036 3.964 13 H 0.097 0.903 14 C 0.003 3.997 15 N -0.401 5.401 16 C 0.315 3.685 17 O -0.384 6.384 18 C -0.303 4.303 19 S 0.166 5.834 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.137 4.137 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.093 0.907 45 H 0.224 0.776 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.655 -30.384 -5.428 32.992 hybrid contribution 2.708 1.193 -0.147 2.963 sum 14.363 -29.191 -5.574 33.007 Atomic orbital electron populations 1.21739 0.93198 1.02247 1.03802 1.22551 0.96219 0.83203 0.99997 1.88074 1.18173 1.26445 1.95350 1.22221 0.84312 0.94608 1.02152 1.20349 0.82258 0.90804 0.77036 1.90877 1.49168 1.49866 1.46394 1.48029 1.05170 1.07222 1.74305 1.21794 0.89328 0.91185 0.99201 1.21946 0.98956 0.97789 0.98859 1.21518 0.97579 0.94187 1.02461 1.22046 0.96076 1.00444 0.98718 1.21487 0.95876 0.80236 0.98768 0.90254 1.22041 0.93958 0.79192 1.04488 1.46237 1.12153 1.08392 1.73334 1.20215 0.85471 0.86800 0.75970 1.90735 1.18368 1.81288 1.48028 1.23527 1.06946 0.95001 1.04782 1.85459 1.07254 1.01352 1.89332 1.22919 0.97633 0.93474 1.54182 0.90937 1.25003 0.94808 0.99176 0.94734 1.70040 1.05420 1.30947 1.43862 0.86119 0.79185 0.82288 0.77890 1.19660 1.20608 1.20615 0.91542 0.90962 0.91475 0.93271 0.93240 0.90509 0.90390 0.89805 0.90789 0.90469 0.91240 0.91553 0.91276 0.90964 0.90189 0.88604 0.90739 0.77600 0.89420 0.89375 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.15 0.38 -0.73 16 2 C 0.06 0.42 6.66 37.15 0.25 0.66 16 3 O -0.36 -4.12 9.88 -55.14 -0.54 -4.67 16 4 C 0.05 0.38 4.77 36.00 0.17 0.56 16 5 C 0.51 5.87 7.61 -10.99 -0.08 5.79 16 6 O -0.49 -8.32 12.05 -14.36 -0.17 -8.49 16 7 N -0.61 -5.26 2.97 -165.22 -0.49 -5.75 16 8 C 0.11 0.49 6.35 -3.71 -0.02 0.46 16 9 C -0.14 -0.57 6.08 -26.62 -0.16 -0.73 16 10 C -0.12 -0.63 5.88 -26.69 -0.16 -0.79 16 11 C -0.13 -1.05 5.09 -26.61 -0.14 -1.19 16 12 C 0.14 1.35 3.07 -67.60 -0.21 1.14 16 13 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 14 C 0.13 1.87 3.56 -4.04 -0.01 1.85 16 15 N -0.74 -11.21 5.22 -60.29 -0.31 -11.52 16 16 C 0.53 10.94 7.85 -10.99 -0.09 10.85 16 17 O -0.51 -13.05 15.86 5.55 0.09 -12.96 16 18 C -0.15 -3.25 6.16 36.00 0.22 -3.03 16 19 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 20 C -0.53 -15.67 9.50 30.94 0.29 -15.37 16 21 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.89 13.22 55.49 0.73 -26.16 16 24 Si 0.92 21.92 29.55 -169.99 -5.02 16.89 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.40 7.72 -51.93 -0.40 0.00 16 34 H 0.08 0.44 7.92 -51.93 -0.41 0.03 16 35 H 0.08 0.22 5.93 -51.93 -0.31 -0.09 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.07 0.35 8.14 -51.92 -0.42 -0.08 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.59 7.09 -51.93 -0.37 0.23 16 43 H 0.10 1.72 6.24 -51.93 -0.32 1.39 16 44 H 0.07 1.32 7.23 -51.93 -0.38 0.95 16 45 H 0.39 4.41 7.47 -40.82 -0.30 4.11 16 46 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 47 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 48 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 398.69 15.07 6.01 6.01 Total: -1.00 -39.90 398.69 -9.53 -49.43 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.95 Total: -0.33 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 0.35 Total: 1.49 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -0.07 Total: -43.44 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.63 Total: -26.12 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -39.90 -9.53 -49.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001061983309.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.150 kcal (2) G-P(sol) polarization free energy of solvation -39.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds