Wall clock time and date at job start Sat Apr 11 2020 07:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42898 * 109.47537 * 2 1 4 4 C 1.42902 * 114.00516 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.46985 * 179.97438 * 4 3 2 6 6 O 1.21285 * 120.00580 * 359.97438 * 5 4 3 7 7 N 1.34780 * 120.00027 * 179.97438 * 5 4 3 8 8 C 1.46928 * 120.62810 * 5.55819 * 7 5 4 9 9 C 1.53190 * 108.77834 * 233.62996 * 8 7 5 10 10 C 1.53033 * 109.31464 * 305.36851 * 9 8 7 11 11 C 1.53043 * 109.53914 * 61.35911 * 10 9 8 12 12 C 1.46923 * 120.63354 * 185.58558 * 7 5 4 13 13 H 1.09001 * 109.69994 * 246.22768 * 12 7 5 14 14 C 1.53003 * 109.58662 * 6.57657 * 12 7 5 15 15 N 1.46501 * 109.46793 * 178.12512 * 14 12 7 16 16 C 1.34776 * 119.99780 * 185.03849 * 15 14 12 17 17 O 1.21290 * 119.99867 * 359.97438 * 16 15 14 18 18 C 1.50693 * 120.00167 * 180.02562 * 16 15 14 19 19 S 1.80999 * 109.47312 * 179.97438 * 18 16 15 20 20 C 1.76201 * 100.00207 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99870 * 0.02562 * 20 19 18 22 22 C 1.38804 * 120.00044 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99867 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99773 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47253 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47165 * 120.00265 * 24 22 20 27 27 H 1.48506 * 109.47260 * 239.99942 * 24 22 20 28 28 H 1.09003 * 109.47067 * 60.00564 * 1 2 3 29 29 H 1.09004 * 109.47592 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47432 * 300.00113 * 1 2 3 31 31 H 1.09006 * 109.47756 * 239.99635 * 2 1 3 32 32 H 1.09003 * 109.47067 * 119.99436 * 2 1 3 33 33 H 1.08994 * 109.46814 * 59.99511 * 4 3 2 34 34 H 1.08997 * 109.46585 * 299.99862 * 4 3 2 35 35 H 1.09000 * 109.58740 * 353.41973 * 8 7 5 36 36 H 1.08999 * 109.58915 * 113.84205 * 8 7 5 37 37 H 1.09001 * 109.49982 * 185.41043 * 9 8 7 38 38 H 1.09009 * 109.49606 * 65.31404 * 9 8 7 39 39 H 1.09005 * 109.46159 * 301.34318 * 10 9 8 40 40 H 1.08999 * 109.46309 * 181.38198 * 10 9 8 41 41 H 1.09000 * 109.49590 * 58.59076 * 11 10 9 42 42 H 1.09003 * 109.49697 * 178.65222 * 11 10 9 43 43 H 1.08995 * 109.46903 * 298.12767 * 14 12 7 44 44 H 1.09001 * 109.46860 * 58.12711 * 14 12 7 45 45 H 0.96998 * 120.00013 * 5.03658 * 15 14 12 46 46 H 1.08997 * 109.47597 * 299.99646 * 18 16 15 47 47 H 1.09006 * 109.47314 * 59.99751 * 18 16 15 48 48 H 0.96999 * 119.99359 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8194 2.9161 -0.0001 6 8 2.9610 3.7729 -0.0015 7 7 5.1209 3.2663 0.0008 8 6 6.1708 2.2456 -0.1200 9 6 7.1528 2.4080 1.0444 10 6 7.6746 3.8464 1.0696 11 6 6.5061 4.8111 1.2849 12 6 5.5168 4.6759 0.1232 13 1 5.9911 5.0059 -0.8010 14 6 4.2804 5.5337 0.3998 15 7 4.6837 6.9323 0.5657 16 6 3.7714 7.8593 0.9191 17 8 2.6165 7.5357 1.0992 18 6 4.1861 9.2980 1.0893 19 16 2.7470 10.2888 1.5620 20 6 3.4981 11.8776 1.6903 21 1 4.5536 11.9933 1.4932 22 6 2.7332 12.9803 2.0448 23 7 1.4468 12.8390 2.2855 24 14 3.5294 14.6646 2.1800 25 1 4.9756 14.5556 1.8610 26 1 2.8808 15.5970 1.2233 27 1 3.3645 15.1805 3.5628 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8901 33 1 3.8340 0.9764 -0.8891 34 1 3.8332 0.9767 0.8908 35 1 5.7215 1.2531 -0.0834 36 1 6.6993 2.3749 -1.0644 37 1 7.9883 1.7201 0.9145 38 1 6.6435 2.1894 1.9831 39 1 8.1621 4.0726 0.1212 40 1 8.3923 3.9583 1.8823 41 1 6.0030 4.5698 2.2212 42 1 6.8815 5.8336 1.3266 43 1 3.5871 5.4523 -0.4373 44 1 3.7930 5.1856 1.3105 45 1 5.6073 7.1911 0.4214 46 1 4.9467 9.3675 1.8669 47 1 4.5920 9.6728 0.1496 48 1 0.9123 13.6097 2.5328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001061983309.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:42 Heat of formation + Delta-G solvation = -137.371303 kcal Electronic energy + Delta-G solvation = -28001.675846 eV Core-core repulsion = 23989.220446 eV Total energy + Delta-G solvation = -4012.455400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.84593 -40.45415 -39.10727 -38.16083 -36.12270 -34.59021 -34.00726 -32.97339 -32.24047 -30.72262 -29.00313 -27.75602 -27.04025 -25.51533 -23.75466 -23.13467 -22.09428 -21.74781 -20.18963 -19.77068 -18.48600 -17.89798 -17.72123 -17.54052 -16.93088 -16.88836 -16.78800 -16.47565 -16.04562 -15.79645 -15.34189 -15.29422 -14.97173 -14.81167 -14.69299 -14.37727 -14.35334 -13.98348 -13.77959 -13.70738 -13.32983 -13.23845 -13.16647 -12.93317 -12.87423 -12.59853 -12.34575 -12.22924 -12.13210 -11.98657 -11.72696 -11.64614 -11.51684 -11.16344 -11.03490 -10.67902 -10.45582 -10.27043 -10.04642 -9.64392 -8.68816 -8.34754 -6.13962 1.24129 1.41656 1.42331 1.48575 1.55659 1.61971 1.64391 2.26444 2.31277 2.88105 2.99121 3.32540 3.40553 3.65481 3.77355 3.86727 3.98742 4.05604 4.10378 4.13890 4.14884 4.25785 4.26354 4.28588 4.32176 4.47534 4.47746 4.48824 4.65173 4.70220 4.79433 4.85885 4.94718 5.00544 5.01380 5.06018 5.16783 5.24449 5.25056 5.37500 5.41526 5.47174 5.53457 6.09115 6.19932 6.34092 6.50528 7.05792 7.11163 7.27965 8.75059 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013952 B = 0.002212 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.340902 B =12654.793890 C =14467.928125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.052 3.948 3 O -0.409 6.409 4 C 0.049 3.951 5 C 0.496 3.504 6 O -0.562 6.562 7 N -0.603 5.603 8 C 0.100 3.900 9 C -0.135 4.135 10 C -0.116 4.116 11 C -0.132 4.132 12 C 0.145 3.855 13 H 0.102 0.898 14 C 0.138 3.862 15 N -0.713 5.713 16 C 0.529 3.471 17 O -0.569 6.569 18 C -0.124 4.124 19 S -0.160 6.160 20 C -0.543 4.543 21 H 0.085 0.915 22 C 0.009 3.991 23 N -0.913 5.913 24 Si 1.004 2.996 25 H -0.254 1.254 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.050 0.950 29 H 0.099 0.901 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.050 0.950 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.037 0.963 45 H 0.414 0.586 46 H 0.114 0.886 47 H 0.112 0.888 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.988 -32.065 -6.624 37.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.024 4.024 3 O -0.329 6.329 4 C -0.030 4.030 5 C 0.285 3.715 6 O -0.440 6.440 7 N -0.339 5.339 8 C -0.020 4.020 9 C -0.173 4.173 10 C -0.154 4.154 11 C -0.170 4.170 12 C 0.042 3.958 13 H 0.120 0.880 14 C 0.015 3.985 15 N -0.370 5.370 16 C 0.315 3.685 17 O -0.448 6.448 18 C -0.275 4.275 19 S 0.067 5.933 20 C -0.691 4.691 21 H 0.104 0.896 22 C -0.195 4.195 23 N -0.550 5.550 24 Si 0.825 3.175 25 H -0.178 1.178 26 H -0.199 1.199 27 H -0.199 1.199 28 H 0.070 0.930 29 H 0.117 0.883 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.131 0.869 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.056 0.944 45 H 0.252 0.748 46 H 0.132 0.868 47 H 0.131 0.869 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.345 -31.996 -6.297 36.477 hybrid contribution 1.337 1.524 0.091 2.029 sum 17.682 -30.472 -6.206 35.773 Atomic orbital electron populations 1.21803 0.93943 1.03453 1.02102 1.22757 0.95776 0.81887 1.01957 1.88030 1.20151 1.28950 1.95773 1.22398 0.83262 0.92233 1.05076 1.21169 0.82482 0.92004 0.75829 1.90865 1.51256 1.51924 1.49924 1.48179 1.05395 1.07579 1.72739 1.22205 0.88414 0.90998 1.00416 1.21959 0.99555 0.97621 0.98124 1.21525 0.96276 0.93993 1.03565 1.22033 0.96464 1.01873 0.96623 1.21426 0.93449 0.80364 1.00603 0.88020 1.21811 0.96062 0.79236 1.01402 1.45922 1.12402 1.07921 1.70777 1.20188 0.85266 0.87298 0.75752 1.90723 1.20986 1.82058 1.50994 1.23344 1.03699 0.93953 1.06510 1.85741 1.13288 1.04097 1.90195 1.23236 0.98165 0.93304 1.54355 0.89642 1.26218 0.95326 1.04133 0.93857 1.70217 1.07387 1.32509 1.44880 0.84837 0.78772 0.75785 0.78095 1.17770 1.19948 1.19892 0.93049 0.88262 0.93379 0.90953 0.91376 0.86867 0.87530 0.87285 0.88691 0.87679 0.92303 0.89973 0.90579 0.93155 0.89625 0.91902 0.94409 0.74845 0.86831 0.86934 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 10.28 71.98 0.74 -1.56 16 2 C 0.05 0.70 6.66 71.98 0.48 1.18 16 3 O -0.41 -9.43 9.88 -129.94 -1.28 -10.71 16 4 C 0.05 0.73 4.77 71.23 0.34 1.07 16 5 C 0.50 11.62 7.61 87.65 0.67 12.29 16 6 O -0.56 -20.79 12.05 15.99 0.19 -20.59 16 7 N -0.60 -9.55 2.97 -795.03 -2.36 -11.91 16 8 C 0.10 0.51 6.35 86.36 0.55 1.06 16 9 C -0.13 -0.59 6.08 30.67 0.19 -0.40 16 10 C -0.12 -0.80 5.88 30.62 0.18 -0.62 16 11 C -0.13 -1.82 5.09 30.67 0.16 -1.67 16 12 C 0.15 2.65 3.07 44.97 0.14 2.78 16 13 H 0.10 1.45 8.14 -2.39 -0.02 1.44 16 14 C 0.14 4.31 3.56 86.38 0.31 4.61 16 15 N -0.71 -21.61 5.22 -463.06 -2.42 -24.03 16 16 C 0.53 22.52 7.85 87.65 0.69 23.21 16 17 O -0.57 -31.10 15.86 -3.06 -0.05 -31.14 16 18 C -0.12 -5.29 6.16 71.23 0.44 -4.85 16 19 S -0.16 -9.47 20.57 -56.49 -1.16 -10.63 16 20 C -0.54 -32.06 9.50 67.96 0.65 -31.41 16 21 H 0.09 4.65 7.80 -2.91 -0.02 4.62 16 22 C 0.01 0.53 5.49 84.86 0.47 0.99 16 23 N -0.91 -58.12 13.22 21.65 0.29 -57.84 16 24 Si 1.00 44.76 29.55 68.60 2.03 46.79 16 25 H -0.25 -10.49 7.11 99.48 0.71 -9.78 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.11 0.81 7.72 -2.39 -0.02 0.79 16 34 H 0.11 0.93 7.92 -2.39 -0.02 0.91 16 35 H 0.11 0.04 5.93 -2.39 -0.01 0.03 16 36 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 39 H 0.08 0.36 8.14 -2.38 -0.02 0.34 16 40 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.09 1.06 7.09 -2.39 -0.02 1.05 16 43 H 0.06 2.45 6.24 -2.39 -0.01 2.44 16 44 H 0.04 1.47 7.23 -2.39 -0.02 1.45 16 45 H 0.41 8.60 7.47 -92.71 -0.69 7.91 16 46 H 0.11 4.27 8.14 -2.40 -0.02 4.25 16 47 H 0.11 4.27 8.14 -2.39 -0.02 4.25 16 48 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -96.60 398.69 1.47 -95.13 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.26 Total: 18.24 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 5.98 Total: 6.69 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -4.50 Total: -93.77 kcal Atomic # 8 Polarization: -61.31 SS G_CDS: -1.14 Total: -62.45 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: -9.47 SS G_CDS: -1.16 Total: -10.63 kcal Total: -96.60 1.47 -95.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001061983309.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.240 kcal (2) G-P(sol) polarization free energy of solvation -96.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds