Wall clock time and date at job start Sat Apr 11 2020 07:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.47341 * 2 1 4 4 C 1.42899 * 114.00217 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47296 * 29.99221 * 4 3 2 6 6 C 1.53001 * 109.46909 * 269.99459 * 4 3 2 7 7 C 1.50698 * 109.47249 * 149.99873 * 4 3 2 8 8 O 1.21287 * 120.00287 * 4.99409 * 7 4 3 9 9 N 1.34780 * 120.00143 * 184.99880 * 7 4 3 10 10 C 1.46497 * 120.00384 * 174.97129 * 9 7 4 11 11 C 1.52997 * 112.84660 * 294.01424 * 10 9 7 12 12 N 1.46499 * 109.47646 * 311.51379 * 11 10 9 13 13 C 1.34777 * 120.00560 * 174.95943 * 12 11 10 14 14 O 1.21283 * 119.99835 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99837 * 179.97438 * 13 12 11 16 16 S 1.80999 * 109.46826 * 180.02562 * 15 13 12 17 17 C 1.76205 * 100.00146 * 180.02562 * 16 15 13 18 18 H 1.07993 * 119.99619 * 0.02562 * 17 16 15 19 19 C 1.38800 * 119.99959 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00114 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99870 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47243 * 89.99974 * 21 19 17 23 23 H 1.48497 * 109.47590 * 210.00188 * 21 19 17 24 24 H 1.48501 * 109.47106 * 330.00515 * 21 19 17 25 25 C 1.53773 * 113.61564 * 162.70438 * 10 9 7 26 26 C 1.53776 * 87.08449 * 270.88505 * 25 10 9 27 27 C 1.53779 * 113.61374 * 65.20590 * 10 9 7 28 28 H 1.08997 * 109.47268 * 300.00628 * 1 2 3 29 29 H 1.09005 * 109.46966 * 60.00158 * 1 2 3 30 30 H 1.09001 * 109.47378 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46805 * 119.99421 * 2 1 3 32 32 H 1.09001 * 109.47639 * 239.99698 * 2 1 3 33 33 H 1.08994 * 109.47255 * 179.97438 * 6 4 3 34 34 H 1.09004 * 109.47445 * 300.00450 * 6 4 3 35 35 H 1.09002 * 109.47056 * 59.99881 * 6 4 3 36 36 H 0.97004 * 119.99714 * 354.97072 * 9 7 4 37 37 H 1.09003 * 109.47820 * 71.51958 * 11 10 9 38 38 H 1.09003 * 109.47325 * 191.51710 * 11 10 9 39 39 H 0.97000 * 119.99372 * 354.96337 * 12 11 10 40 40 H 1.08996 * 109.47438 * 300.00542 * 15 13 12 41 41 H 1.08997 * 109.47068 * 60.00801 * 15 13 12 42 42 H 0.96997 * 120.00151 * 179.97438 * 20 19 17 43 43 H 1.08997 * 113.61396 * 25.43605 * 25 10 9 44 44 H 1.09008 * 113.61325 * 156.33566 * 25 10 9 45 45 H 1.08999 * 113.61212 * 220.02159 * 26 25 10 46 46 H 1.08998 * 113.61477 * 89.11419 * 26 25 10 47 47 H 1.09002 * 113.61820 * 203.66726 * 27 10 9 48 48 H 1.08999 * 113.61464 * 334.57331 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8632 0.6016 -0.5146 6 6 3.9398 1.5003 1.4417 7 6 3.8342 2.7265 -0.7110 8 8 2.9856 3.5049 -1.0916 9 7 5.1380 2.9940 -0.9235 10 6 5.5264 4.1677 -1.7094 11 6 5.1013 4.0679 -3.1757 12 7 5.4961 2.7626 -3.7110 13 6 5.1340 2.4089 -4.9601 14 8 4.4816 3.1714 -5.6412 15 6 5.5406 1.0664 -5.5108 16 16 4.9088 0.8898 -7.1977 17 6 5.5122 -0.7202 -7.5834 18 1 6.0847 -1.2717 -6.8525 19 6 5.2507 -1.2799 -8.8264 20 7 4.5524 -0.6079 -9.7171 21 14 5.8909 -2.9864 -9.2356 22 1 4.8808 -4.0015 -8.8423 23 1 6.1468 -3.0823 -10.6952 24 1 7.1540 -3.2321 -8.4944 25 6 6.9960 4.5780 -1.5186 26 6 6.5178 5.4536 -0.3484 27 6 5.1494 5.5040 -1.0483 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5137 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 5.0264 1.5859 1.4414 34 1 3.5075 2.3587 1.9559 35 1 3.6481 0.5844 1.9556 36 1 5.8192 2.4093 -0.5559 37 1 4.0193 4.1784 -3.2488 38 1 5.5866 4.8576 -3.7493 39 1 6.0181 2.1529 -3.1663 40 1 6.6280 0.9920 -5.5207 41 1 5.1281 0.2763 -4.8834 42 1 4.3700 -0.9989 -10.5858 43 1 7.6428 3.7557 -1.2128 44 1 7.4019 5.1490 -2.3538 45 1 7.0167 6.4213 -0.2948 46 1 6.4999 4.9319 0.6084 47 1 5.0503 6.3281 -1.7548 48 1 4.3053 5.4291 -0.3627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062578913.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:53 Heat of formation + Delta-G solvation = -102.647634 kcal Electronic energy + Delta-G solvation = -28460.520820 eV Core-core repulsion = 24449.571151 eV Total energy + Delta-G solvation = -4010.949669 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.05630 -39.26829 -38.64284 -37.50059 -34.23086 -33.75172 -32.42647 -32.32624 -30.37119 -29.85621 -27.32033 -26.12760 -25.47787 -24.99765 -23.11445 -22.67006 -21.01818 -20.22990 -19.50132 -17.93257 -17.63319 -17.24748 -16.52474 -16.27349 -16.04009 -15.54703 -15.34677 -15.13074 -14.83551 -14.80360 -14.58331 -13.93274 -13.77276 -13.62119 -13.42869 -13.25122 -12.94285 -12.82779 -12.66314 -12.59577 -12.52176 -12.29206 -12.08894 -11.71756 -11.63214 -11.40482 -11.24708 -11.16130 -11.06549 -11.02302 -10.76280 -10.67144 -10.15800 -9.81890 -9.63409 -9.43443 -9.23032 -9.06687 -8.80051 -8.21706 -6.48795 -6.21028 -3.91473 2.39305 2.47070 3.06094 3.15969 3.21840 3.27794 3.31977 3.53750 3.72361 4.05024 4.20636 4.23316 4.36113 4.45162 4.49134 4.57092 4.63076 4.81573 4.94774 5.02348 5.04129 5.11202 5.13858 5.20372 5.27782 5.31181 5.40815 5.47788 5.50596 5.53909 5.61275 5.63624 5.69468 5.70559 5.77279 5.87662 5.90338 5.92998 5.99850 6.12783 6.31053 6.66682 6.78404 7.20039 7.59370 7.75162 8.01113 8.35275 8.67298 9.23908 10.86393 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009473 B = 0.002911 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.187050 B = 9617.669046 C =11574.336546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.357 6.357 4 C 0.070 3.930 5 H 0.087 0.913 6 C -0.169 4.169 7 C 0.519 3.481 8 O -0.502 6.502 9 N -0.712 5.712 10 C 0.142 3.858 11 C 0.123 3.877 12 N -0.733 5.733 13 C 0.530 3.470 14 O -0.515 6.515 15 C -0.152 4.152 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.135 4.135 26 C -0.140 4.140 27 C -0.133 4.133 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.400 0.600 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.393 0.607 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.268 0.732 43 H 0.074 0.926 44 H 0.100 0.900 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.093 0.907 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.023 5.102 27.051 27.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.275 6.275 4 C 0.009 3.991 5 H 0.105 0.895 6 C -0.227 4.227 7 C 0.304 3.696 8 O -0.374 6.374 9 N -0.367 5.367 10 C 0.055 3.945 11 C -0.002 4.002 12 N -0.387 5.387 13 C 0.316 3.684 14 O -0.389 6.389 15 C -0.302 4.302 16 S 0.168 5.832 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.172 4.172 26 C -0.177 4.177 27 C -0.171 4.171 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.235 0.765 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.226 0.774 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.118 0.882 45 H 0.091 0.909 46 H 0.098 0.902 47 H 0.112 0.888 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.053 7.116 25.422 26.479 hybrid contribution 1.930 -2.928 0.962 3.636 sum 3.984 4.189 26.384 27.010 Atomic orbital electron populations 1.21728 0.93274 1.02366 1.03454 1.22621 0.96151 0.83246 1.00197 1.88060 1.17938 1.26623 1.94890 1.21864 0.84326 0.96458 0.96487 0.89503 1.22233 1.01352 1.03870 0.95235 1.20355 0.82336 0.87528 0.79388 1.90751 1.49935 1.47978 1.48720 1.45566 1.07130 1.28374 1.55600 1.21578 0.96235 0.86523 0.90165 1.21566 1.01998 0.85888 0.90745 1.45824 1.58102 1.18896 1.15900 1.20293 0.79006 0.88425 0.80721 1.90711 1.37528 1.52851 1.57834 1.23510 1.04660 0.95966 1.06099 1.85449 1.71065 1.22448 1.04252 1.22863 1.40250 1.02264 1.03050 0.91007 1.24990 0.94897 0.98517 0.95181 1.70016 1.36700 1.37362 1.06132 0.86173 0.79088 0.82533 0.77725 1.20292 1.20739 1.19722 1.23280 0.93984 1.00186 0.99796 1.22848 0.96901 1.00416 0.97541 1.23173 0.97990 0.95946 1.00025 0.91886 0.91416 0.90903 0.93294 0.92866 0.91095 0.91088 0.91164 0.76484 0.90148 0.90824 0.77378 0.89346 0.89546 0.92174 0.90723 0.88157 0.90928 0.90205 0.88832 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.93 16 2 C 0.05 0.50 6.47 37.16 0.24 0.74 16 3 O -0.36 -4.31 9.53 -55.09 -0.52 -4.83 16 4 C 0.07 0.65 3.13 -27.88 -0.09 0.56 16 5 H 0.09 0.65 7.79 -51.93 -0.40 0.24 16 6 C -0.17 -1.02 9.47 37.16 0.35 -0.67 16 7 C 0.52 5.89 6.74 -10.98 -0.07 5.82 16 8 O -0.50 -8.13 14.51 -14.31 -0.21 -8.33 16 9 N -0.71 -5.65 4.50 -46.86 -0.21 -5.86 16 10 C 0.14 1.27 0.63 -131.01 -0.08 1.19 16 11 C 0.12 1.61 4.92 -4.04 -0.02 1.59 16 12 N -0.73 -10.17 5.38 -60.29 -0.32 -10.50 16 13 C 0.53 10.29 7.85 -10.99 -0.09 10.21 16 14 O -0.52 -12.33 15.86 5.55 0.09 -12.24 16 15 C -0.15 -3.11 6.16 36.00 0.22 -2.88 16 16 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 17 C -0.54 -15.34 9.50 30.94 0.29 -15.04 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.33 13.22 55.49 0.73 -25.59 16 21 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 C -0.13 -0.85 7.37 -25.93 -0.19 -1.04 16 26 C -0.14 -0.86 7.99 -25.92 -0.21 -1.07 16 27 C -0.13 -1.17 6.95 -25.92 -0.18 -1.35 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.34 7.87 -51.93 -0.41 -0.07 16 32 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 33 H 0.07 0.26 7.77 -51.93 -0.40 -0.15 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.36 7.87 -51.93 -0.41 -0.05 16 36 H 0.40 1.84 8.28 -40.82 -0.34 1.51 16 37 H 0.08 1.35 7.34 -51.93 -0.38 0.97 16 38 H 0.07 0.95 7.94 -51.93 -0.41 0.53 16 39 H 0.39 4.17 8.11 -40.82 -0.33 3.84 16 40 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 41 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 42 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16 43 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 44 H 0.10 0.65 7.96 -51.92 -0.41 0.24 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 48 H 0.08 0.86 7.19 -51.93 -0.37 0.48 16 LS Contribution 411.04 15.07 6.19 6.19 Total: -1.00 -38.48 411.04 -9.08 -47.56 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -8.06 Total: 1.94 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 0.46 Total: -0.87 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 0.20 Total: -41.95 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.64 Total: -25.41 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -38.48 -9.08 -47.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062578913.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.083 kcal (2) G-P(sol) polarization free energy of solvation -38.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds