Wall clock time and date at job start Sat Apr 11 2020 07:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.47341 * 2 1 4 4 C 1.42899 * 114.00217 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47296 * 29.99221 * 4 3 2 6 6 C 1.53001 * 109.46909 * 269.99459 * 4 3 2 7 7 C 1.50698 * 109.47249 * 149.99873 * 4 3 2 8 8 O 1.21287 * 120.00287 * 4.99409 * 7 4 3 9 9 N 1.34780 * 120.00143 * 184.99880 * 7 4 3 10 10 C 1.46497 * 120.00384 * 174.97129 * 9 7 4 11 11 C 1.52997 * 112.84660 * 294.01424 * 10 9 7 12 12 N 1.46499 * 109.47646 * 311.51379 * 11 10 9 13 13 C 1.34777 * 120.00560 * 174.95943 * 12 11 10 14 14 O 1.21283 * 119.99835 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99837 * 179.97438 * 13 12 11 16 16 S 1.80999 * 109.46826 * 180.02562 * 15 13 12 17 17 C 1.76205 * 100.00146 * 180.02562 * 16 15 13 18 18 H 1.07993 * 119.99619 * 0.02562 * 17 16 15 19 19 C 1.38800 * 119.99959 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00114 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99870 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47243 * 89.99974 * 21 19 17 23 23 H 1.48497 * 109.47590 * 210.00188 * 21 19 17 24 24 H 1.48501 * 109.47106 * 330.00515 * 21 19 17 25 25 C 1.53773 * 113.61564 * 162.70438 * 10 9 7 26 26 C 1.53776 * 87.08449 * 270.88505 * 25 10 9 27 27 C 1.53779 * 113.61374 * 65.20590 * 10 9 7 28 28 H 1.08997 * 109.47268 * 300.00628 * 1 2 3 29 29 H 1.09005 * 109.46966 * 60.00158 * 1 2 3 30 30 H 1.09001 * 109.47378 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46805 * 119.99421 * 2 1 3 32 32 H 1.09001 * 109.47639 * 239.99698 * 2 1 3 33 33 H 1.08994 * 109.47255 * 179.97438 * 6 4 3 34 34 H 1.09004 * 109.47445 * 300.00450 * 6 4 3 35 35 H 1.09002 * 109.47056 * 59.99881 * 6 4 3 36 36 H 0.97004 * 119.99714 * 354.97072 * 9 7 4 37 37 H 1.09003 * 109.47820 * 71.51958 * 11 10 9 38 38 H 1.09003 * 109.47325 * 191.51710 * 11 10 9 39 39 H 0.97000 * 119.99372 * 354.96337 * 12 11 10 40 40 H 1.08996 * 109.47438 * 300.00542 * 15 13 12 41 41 H 1.08997 * 109.47068 * 60.00801 * 15 13 12 42 42 H 0.96997 * 120.00151 * 179.97438 * 20 19 17 43 43 H 1.08997 * 113.61396 * 25.43605 * 25 10 9 44 44 H 1.09008 * 113.61325 * 156.33566 * 25 10 9 45 45 H 1.08999 * 113.61212 * 220.02159 * 26 25 10 46 46 H 1.08998 * 113.61477 * 89.11419 * 26 25 10 47 47 H 1.09002 * 113.61820 * 203.66726 * 27 10 9 48 48 H 1.08999 * 113.61464 * 334.57331 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8632 0.6016 -0.5146 6 6 3.9398 1.5003 1.4417 7 6 3.8342 2.7265 -0.7110 8 8 2.9856 3.5049 -1.0916 9 7 5.1380 2.9940 -0.9235 10 6 5.5264 4.1677 -1.7094 11 6 5.1013 4.0679 -3.1757 12 7 5.4961 2.7626 -3.7110 13 6 5.1340 2.4089 -4.9601 14 8 4.4816 3.1714 -5.6412 15 6 5.5406 1.0664 -5.5108 16 16 4.9088 0.8898 -7.1977 17 6 5.5122 -0.7202 -7.5834 18 1 6.0847 -1.2717 -6.8525 19 6 5.2507 -1.2799 -8.8264 20 7 4.5524 -0.6079 -9.7171 21 14 5.8909 -2.9864 -9.2356 22 1 4.8808 -4.0015 -8.8423 23 1 6.1468 -3.0823 -10.6952 24 1 7.1540 -3.2321 -8.4944 25 6 6.9960 4.5780 -1.5186 26 6 6.5178 5.4536 -0.3484 27 6 5.1494 5.5040 -1.0483 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5137 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 5.0264 1.5859 1.4414 34 1 3.5075 2.3587 1.9559 35 1 3.6481 0.5844 1.9556 36 1 5.8192 2.4093 -0.5559 37 1 4.0193 4.1784 -3.2488 38 1 5.5866 4.8576 -3.7493 39 1 6.0181 2.1529 -3.1663 40 1 6.6280 0.9920 -5.5207 41 1 5.1281 0.2763 -4.8834 42 1 4.3700 -0.9989 -10.5858 43 1 7.6428 3.7557 -1.2128 44 1 7.4019 5.1490 -2.3538 45 1 7.0167 6.4213 -0.2948 46 1 6.4999 4.9319 0.6084 47 1 5.0503 6.3281 -1.7548 48 1 4.3053 5.4291 -0.3627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062578913.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:52 Heat of formation + Delta-G solvation = -131.417303 kcal Electronic energy + Delta-G solvation = -28461.768367 eV Core-core repulsion = 24449.571151 eV Total energy + Delta-G solvation = -4012.197216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.89833 -40.49036 -39.69810 -38.35075 -35.54501 -34.62854 -34.58494 -33.00415 -31.50051 -30.92395 -28.48597 -27.60893 -26.75612 -25.72491 -23.87400 -23.42589 -21.99979 -21.48300 -20.32196 -19.85583 -18.40138 -18.14435 -17.83332 -17.46893 -16.88445 -16.87754 -16.64406 -16.37960 -16.16937 -15.79208 -15.71004 -15.36209 -14.88669 -14.65847 -14.46176 -14.29854 -14.12063 -14.03457 -13.48018 -13.38095 -13.26417 -13.20768 -13.17088 -12.90450 -12.88917 -12.75819 -12.59393 -12.32023 -12.09233 -11.90313 -11.81307 -11.72240 -11.35487 -11.14471 -11.01959 -10.94100 -10.46960 -10.27865 -10.14085 -10.11710 -8.68306 -8.34499 -6.13558 1.25529 1.42971 1.46408 1.54112 1.56643 1.58509 1.74726 2.24547 2.27875 2.86914 2.99730 3.29984 3.36572 3.56836 3.63103 3.75137 3.88934 3.92531 3.99620 4.01696 4.16059 4.26151 4.28356 4.39321 4.44863 4.46135 4.47046 4.59988 4.72003 4.78913 4.80789 4.84982 4.86430 4.97734 5.05663 5.09054 5.12419 5.19453 5.22211 5.22736 5.38287 5.41401 5.62610 6.09521 6.19628 6.46203 6.53773 7.06341 7.21694 7.23805 8.74875 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009473 B = 0.002911 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.187050 B = 9617.669046 C =11574.336546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.395 6.395 4 C 0.065 3.935 5 H 0.108 0.892 6 C -0.160 4.160 7 C 0.512 3.488 8 O -0.561 6.561 9 N -0.691 5.691 10 C 0.139 3.861 11 C 0.125 3.875 12 N -0.702 5.702 13 C 0.529 3.471 14 O -0.569 6.569 15 C -0.125 4.125 16 S -0.157 6.157 17 C -0.545 4.545 18 H 0.085 0.915 19 C 0.012 3.988 20 N -0.913 5.913 21 Si 1.001 2.999 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.255 1.255 25 C -0.120 4.120 26 C -0.123 4.123 27 C -0.142 4.142 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.101 0.899 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.422 0.578 37 H 0.036 0.964 38 H 0.075 0.925 39 H 0.414 0.586 40 H 0.115 0.885 41 H 0.108 0.892 42 H 0.271 0.729 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.084 0.916 46 H 0.093 0.907 47 H 0.087 0.913 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.390 2.837 29.856 30.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.314 6.314 4 C 0.004 3.996 5 H 0.126 0.874 6 C -0.218 4.218 7 C 0.299 3.701 8 O -0.438 6.438 9 N -0.347 5.347 10 C 0.052 3.948 11 C 0.000 4.000 12 N -0.356 5.356 13 C 0.315 3.685 14 O -0.448 6.448 15 C -0.276 4.276 16 S 0.070 5.930 17 C -0.692 4.692 18 H 0.103 0.897 19 C -0.193 4.193 20 N -0.549 5.549 21 Si 0.822 3.178 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.179 1.179 25 C -0.157 4.157 26 C -0.161 4.161 27 C -0.181 4.181 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.261 0.739 37 H 0.055 0.945 38 H 0.093 0.907 39 H 0.251 0.749 40 H 0.134 0.866 41 H 0.126 0.874 42 H 0.080 0.920 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.103 0.897 46 H 0.111 0.889 47 H 0.106 0.894 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.498 4.822 28.312 29.241 hybrid contribution 0.842 -2.129 0.176 2.296 sum 6.341 2.693 28.488 29.309 Atomic orbital electron populations 1.21770 0.93499 1.03385 1.02290 1.22777 0.96156 0.82395 1.01317 1.88025 1.19859 1.28316 1.95189 1.22122 0.83345 0.95623 0.98480 0.87431 1.22214 1.03045 1.03899 0.92640 1.20982 0.82715 0.87778 0.78644 1.90736 1.51767 1.50036 1.51270 1.45395 1.06706 1.28172 1.54463 1.21621 0.98760 0.87030 0.87397 1.21613 0.99433 0.85124 0.93810 1.45498 1.56568 1.19495 1.14047 1.20209 0.78643 0.87710 0.81965 1.90702 1.40180 1.54196 1.59693 1.23330 1.05854 0.97213 1.01193 1.85710 1.72782 1.23701 1.10776 1.23199 1.40281 1.02030 1.03723 0.89653 1.26170 0.94854 1.03385 0.94880 1.70195 1.38284 1.39730 1.06722 0.84922 0.79028 0.76256 0.77571 1.19351 1.20425 1.17853 1.23263 0.91734 1.00893 0.99819 1.22801 0.94199 1.01293 0.97776 1.23221 0.99141 0.95759 0.99988 0.91776 0.93834 0.88779 0.90484 0.93209 0.88020 0.92662 0.89743 0.73916 0.94538 0.90654 0.74879 0.86647 0.87425 0.92025 0.87788 0.87970 0.89716 0.88862 0.89402 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 10.28 71.98 0.74 -1.91 16 2 C 0.05 0.87 6.47 71.98 0.47 1.33 16 3 O -0.39 -9.55 9.53 -129.99 -1.24 -10.79 16 4 C 0.07 1.10 3.13 29.85 0.09 1.19 16 5 H 0.11 1.31 7.79 -2.39 -0.02 1.29 16 6 C -0.16 -1.48 9.47 71.98 0.68 -0.80 16 7 C 0.51 11.40 6.74 87.66 0.59 11.99 16 8 O -0.56 -19.24 14.51 15.94 0.23 -19.00 16 9 N -0.69 -9.45 4.50 -420.56 -1.89 -11.35 16 10 C 0.14 2.29 0.63 4.13 0.00 2.29 16 11 C 0.13 3.29 4.92 86.38 0.43 3.71 16 12 N -0.70 -18.61 5.38 -463.06 -2.49 -21.10 16 13 C 0.53 20.54 7.85 87.66 0.69 21.22 16 14 O -0.57 -28.40 15.86 -3.04 -0.05 -28.45 16 15 C -0.12 -4.98 6.16 71.24 0.44 -4.54 16 16 S -0.16 -8.86 20.57 -56.49 -1.16 -10.03 16 17 C -0.54 -31.06 9.50 67.95 0.65 -30.41 16 18 H 0.09 4.46 7.80 -2.91 -0.02 4.43 16 19 C 0.01 0.67 5.49 84.86 0.47 1.13 16 20 N -0.91 -56.60 13.22 21.65 0.29 -56.31 16 21 Si 1.00 43.29 29.55 68.60 2.03 45.32 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.25 -10.19 7.11 99.48 0.71 -9.49 16 25 C -0.12 -1.06 7.37 31.12 0.23 -0.83 16 26 C -0.12 -1.13 7.99 31.12 0.25 -0.88 16 27 C -0.14 -2.45 6.95 31.12 0.22 -2.23 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 0.89 7.87 -2.39 -0.02 0.87 16 32 H 0.05 0.88 8.08 -2.39 -0.02 0.86 16 33 H 0.10 0.28 7.77 -2.39 -0.02 0.27 16 34 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.08 0.57 7.87 -2.39 -0.02 0.55 16 36 H 0.42 2.07 8.28 -92.71 -0.77 1.31 16 37 H 0.04 1.31 7.34 -2.39 -0.02 1.29 16 38 H 0.08 1.96 7.94 -2.39 -0.02 1.94 16 39 H 0.41 7.45 8.11 -92.71 -0.75 6.70 16 40 H 0.12 4.00 8.14 -2.40 -0.02 3.98 16 41 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 42 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 43 H 0.10 0.39 8.09 -2.39 -0.02 0.37 16 44 H 0.10 0.96 7.96 -2.38 -0.02 0.94 16 45 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.09 1.57 8.10 -2.39 -0.02 1.55 16 48 H 0.06 1.25 7.19 -2.39 -0.02 1.23 16 Total: -1.00 -91.24 411.04 1.09 -90.15 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -0.55 Total: 20.28 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 5.93 Total: 1.28 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -4.10 Total: -88.76 kcal Atomic # 8 Polarization: -57.18 SS G_CDS: -1.06 Total: -58.24 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.16 Total: -10.03 kcal Total: -91.24 1.09 -90.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062578913.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.272 kcal (2) G-P(sol) polarization free energy of solvation -91.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds