Wall clock time and date at job start Sat Apr 11 2020 07:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.46900 * 2 1 4 4 C 1.42898 * 113.99663 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.47121 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47254 * 179.97438 * 5 4 3 7 7 O 1.21277 * 119.99882 * 0.02562 * 6 5 4 8 8 N 1.34770 * 119.99779 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99770 * 180.02562 * 8 6 5 10 10 C 1.53010 * 109.47083 * 174.96292 * 9 8 6 11 11 N 1.46493 * 112.84911 * 311.52266 * 10 9 8 12 12 C 1.34777 * 120.00129 * 294.02337 * 11 10 9 13 13 O 1.21281 * 120.00173 * 354.96852 * 12 11 10 14 14 C 1.50708 * 120.00141 * 174.97223 * 12 11 10 15 15 S 1.80996 * 109.47252 * 179.97438 * 14 12 11 16 16 C 1.76195 * 99.99884 * 179.97438 * 15 14 12 17 17 H 1.07992 * 120.00607 * 0.02562 * 16 15 14 18 18 C 1.38805 * 119.99868 * 180.02562 * 16 15 14 19 19 N 1.31631 * 119.99952 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00064 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47062 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47241 * 119.99767 * 20 18 16 23 23 H 1.48502 * 109.47005 * 239.99996 * 20 18 16 24 24 C 1.53775 * 113.68859 * 82.79138 * 10 9 8 25 25 C 1.53782 * 87.08260 * 139.99290 * 24 10 9 26 26 C 1.53778 * 113.61271 * 180.32315 * 10 9 8 27 27 H 1.09001 * 109.47165 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47238 * 300.00627 * 1 2 3 29 29 H 1.08994 * 109.47120 * 60.00678 * 1 2 3 30 30 H 1.08995 * 109.47238 * 239.99373 * 2 1 3 31 31 H 1.09006 * 109.46714 * 119.99393 * 2 1 3 32 32 H 1.08997 * 109.47597 * 59.99393 * 4 3 2 33 33 H 1.09007 * 109.47053 * 299.99326 * 4 3 2 34 34 H 1.08999 * 109.46682 * 60.00049 * 5 4 3 35 35 H 1.08997 * 109.47068 * 299.99778 * 5 4 3 36 36 H 0.96999 * 120.00349 * 0.02562 * 8 6 5 37 37 H 1.09002 * 109.46965 * 54.96849 * 9 8 6 38 38 H 1.08994 * 109.47187 * 294.96475 * 9 8 6 39 39 H 0.97000 * 120.00227 * 114.01862 * 11 10 9 40 40 H 1.09000 * 109.46675 * 59.99418 * 14 12 11 41 41 H 1.09000 * 109.46876 * 299.99651 * 14 12 11 42 42 H 0.96998 * 120.00434 * 179.97438 * 19 18 16 43 43 H 1.09000 * 113.61589 * 254.54306 * 24 10 9 44 44 H 1.09000 * 113.61764 * 25.44064 * 24 10 9 45 45 H 1.08996 * 113.61346 * 220.02295 * 25 24 10 46 46 H 1.08999 * 113.61492 * 89.11500 * 25 24 10 47 47 H 1.08995 * 113.61919 * 334.48913 * 26 10 9 48 48 H 1.09010 * 113.61004 * 105.38860 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8254 2.9384 -0.0012 6 6 5.3277 3.0574 -0.0012 7 8 6.0151 2.0583 -0.0012 8 7 5.9072 4.2741 -0.0022 9 6 7.3677 4.3898 -0.0027 10 6 7.7626 5.8625 -0.1305 11 7 7.0515 6.5505 -1.2108 12 6 7.2699 6.1976 -2.4931 13 8 8.1206 5.3752 -2.7593 14 6 6.4571 6.8251 -3.5962 15 16 6.9829 6.1507 -5.1915 16 6 5.9005 7.0311 -6.2675 17 1 5.1918 7.7374 -5.8611 18 6 5.9585 6.8167 -7.6377 19 7 6.8226 5.9562 -8.1332 20 14 4.8115 7.7505 -8.7785 21 1 3.9431 8.6513 -7.9786 22 1 5.6124 8.5556 -9.7354 23 1 3.9666 6.7867 -9.5284 24 6 7.7421 6.6257 1.2044 25 6 9.0271 7.3268 0.7331 26 6 9.2829 6.0932 -0.1488 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8333 0.9766 -0.8907 33 1 3.8340 0.9765 0.8893 34 1 3.4229 3.4221 0.8888 35 1 3.4223 3.4217 -0.8911 36 1 5.3574 5.0733 -0.0025 37 1 7.7762 3.8299 -0.8440 38 1 7.7644 3.9868 0.9290 39 1 6.4234 7.2600 -1.0033 40 1 6.6091 7.9045 -3.5905 41 1 5.4010 6.6060 -3.4391 42 1 6.8630 5.8061 -9.0906 43 1 6.8911 7.2986 1.3096 44 1 7.8877 5.9865 2.0752 45 1 9.7666 7.4599 1.5227 46 1 8.8437 8.2390 0.1654 47 1 9.8497 5.3084 0.3519 48 1 9.6757 6.3363 -1.1362 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062694327.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:13:16 Heat of formation + Delta-G solvation = -137.301015 kcal Electronic energy + Delta-G solvation = -27803.489800 eV Core-core repulsion = 23791.037447 eV Total energy + Delta-G solvation = -4012.452353 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.77879 -40.61511 -39.10906 -38.86407 -35.56999 -34.59506 -34.28531 -33.52984 -31.40555 -30.69372 -28.83974 -27.66262 -26.73287 -24.96221 -23.70086 -23.49087 -22.01815 -21.40821 -20.20191 -19.83113 -18.59313 -17.83340 -17.55480 -17.48093 -17.08813 -16.88809 -16.75581 -16.42045 -16.30310 -16.01775 -15.53319 -15.28176 -15.00996 -14.93708 -14.69246 -14.55657 -14.25178 -13.86762 -13.58589 -13.24344 -13.22860 -13.16239 -13.01259 -12.92977 -12.77351 -12.66591 -12.57218 -12.06356 -12.03998 -11.87476 -11.84833 -11.69959 -11.36151 -11.16587 -11.05837 -10.78810 -10.63508 -10.26038 -10.12854 -10.08016 -8.66782 -8.35360 -6.13018 1.26127 1.40696 1.46253 1.54631 1.57194 1.63712 1.93002 2.22452 2.27788 2.84447 2.99113 3.30181 3.40599 3.61419 3.70512 3.72707 3.90632 3.99231 4.01279 4.09497 4.15583 4.30862 4.35757 4.41671 4.45346 4.47619 4.49665 4.51813 4.70663 4.76125 4.79108 4.82750 4.87625 4.90292 5.02835 5.07326 5.13147 5.14205 5.24872 5.26812 5.39989 5.41469 5.67238 6.15445 6.19296 6.46399 6.53406 7.06248 7.17696 7.29418 8.73974 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.006373 B = 0.003205 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4392.167777 B = 8734.673956 C =12369.177908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.403 6.403 4 C 0.080 3.920 5 C -0.130 4.130 6 C 0.513 3.487 7 O -0.589 6.589 8 N -0.707 5.707 9 C 0.126 3.874 10 C 0.136 3.864 11 N -0.693 5.693 12 C 0.538 3.462 13 O -0.554 6.554 14 C -0.129 4.129 15 S -0.155 6.155 16 C -0.542 4.542 17 H 0.084 0.916 18 C 0.011 3.989 19 N -0.913 5.913 20 Si 0.999 3.001 21 H -0.254 1.254 22 H -0.275 1.275 23 H -0.276 1.276 24 C -0.111 4.111 25 C -0.129 4.129 26 C -0.148 4.148 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.038 0.962 33 H 0.056 0.944 34 H 0.133 0.867 35 H 0.110 0.890 36 H 0.415 0.585 37 H 0.034 0.966 38 H 0.087 0.913 39 H 0.420 0.580 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.270 0.730 43 H 0.102 0.898 44 H 0.113 0.887 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.095 0.905 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.739 0.619 25.733 27.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 O -0.323 6.323 4 C 0.002 3.998 5 C -0.169 4.169 6 C 0.300 3.700 7 O -0.470 6.470 8 N -0.359 5.359 9 C 0.001 3.999 10 C 0.049 3.951 11 N -0.348 5.348 12 C 0.324 3.676 13 O -0.431 6.431 14 C -0.280 4.280 15 S 0.072 5.928 16 C -0.690 4.690 17 H 0.102 0.898 18 C -0.193 4.193 19 N -0.549 5.549 20 Si 0.820 3.180 21 H -0.178 1.178 22 H -0.200 1.200 23 H -0.201 1.201 24 C -0.148 4.148 25 C -0.167 4.167 26 C -0.187 4.187 27 H 0.108 0.892 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.151 0.849 35 H 0.129 0.871 36 H 0.252 0.748 37 H 0.052 0.948 38 H 0.105 0.895 39 H 0.259 0.741 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.079 0.921 43 H 0.120 0.880 44 H 0.132 0.868 45 H 0.106 0.894 46 H 0.099 0.901 47 H 0.113 0.887 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.904 -1.358 25.166 26.131 hybrid contribution -1.285 1.308 -1.128 2.152 sum -8.189 -0.051 24.038 25.394 Atomic orbital electron populations 1.21758 0.92303 1.03476 1.02934 1.22684 0.96674 0.82754 1.00716 1.87780 1.20794 1.28159 1.95606 1.22028 0.80840 0.96119 1.00774 1.21429 0.90163 0.97867 1.07482 1.20901 0.91170 0.83025 0.74876 1.90705 1.66608 1.38009 1.51668 1.45661 1.07484 1.08315 1.74421 1.21561 0.80540 0.96336 1.01489 1.21681 0.93846 0.90187 0.89389 1.45383 1.46226 1.39891 1.03333 1.20012 0.82472 0.81222 0.83879 1.90716 1.34274 1.34542 1.83526 1.23373 1.03445 1.04575 0.96622 1.85670 1.52157 1.58087 0.96896 1.23222 1.23282 1.28356 0.94153 0.89820 1.26143 0.97664 0.96248 0.99268 1.70196 1.36188 1.34730 1.13812 0.84908 0.77633 0.77938 0.77489 1.17780 1.20022 1.20103 1.23232 0.99348 0.98685 0.93541 1.22801 0.98436 0.96333 0.99091 1.23265 0.94697 1.00179 1.00564 0.89204 0.91616 0.92395 0.93466 0.92359 0.94406 0.92545 0.84920 0.87137 0.74803 0.94772 0.89487 0.74125 0.87230 0.87232 0.92087 0.87965 0.86826 0.89383 0.90084 0.88654 0.93670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.28 71.98 0.74 -1.22 16 2 C 0.05 0.83 6.66 71.98 0.48 1.31 16 3 O -0.40 -8.77 10.34 -148.98 -1.54 -10.31 16 4 C 0.08 1.77 5.23 71.98 0.38 2.15 16 5 C -0.13 -2.41 6.07 29.85 0.18 -2.23 16 6 C 0.51 12.85 7.83 87.66 0.69 13.54 16 7 O -0.59 -20.40 15.98 -3.02 -0.05 -20.45 16 8 N -0.71 -14.37 5.38 -463.05 -2.49 -16.86 16 9 C 0.13 3.00 4.93 86.38 0.43 3.42 16 10 C 0.14 2.57 0.63 4.13 0.00 2.57 16 11 N -0.69 -14.48 4.53 -420.54 -1.91 -16.39 16 12 C 0.54 18.41 7.40 87.66 0.65 19.06 16 13 O -0.55 -24.77 13.86 -3.03 -0.04 -24.81 16 14 C -0.13 -4.84 6.16 71.24 0.44 -4.40 16 15 S -0.16 -8.55 20.57 -56.49 -1.16 -9.71 16 16 C -0.54 -30.66 9.50 67.96 0.65 -30.02 16 17 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 18 C 0.01 0.64 5.49 84.86 0.47 1.11 16 19 N -0.91 -56.39 13.22 21.65 0.29 -56.11 16 20 Si 1.00 43.48 29.55 68.60 2.03 45.51 16 21 H -0.25 -10.23 7.11 99.48 0.71 -9.53 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 23 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 24 C -0.11 -1.06 7.37 31.12 0.23 -0.83 16 25 C -0.13 -1.69 7.99 31.12 0.25 -1.44 16 26 C -0.15 -3.15 6.95 31.12 0.22 -2.93 16 27 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.04 0.99 8.10 -2.39 -0.02 0.97 16 33 H 0.06 1.23 8.10 -2.38 -0.02 1.22 16 34 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.42 5.62 8.11 -92.71 -0.75 4.87 16 37 H 0.03 1.19 7.34 -2.39 -0.02 1.17 16 38 H 0.09 1.83 7.94 -2.39 -0.02 1.81 16 39 H 0.42 5.37 8.67 -92.71 -0.80 4.56 16 40 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 41 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 42 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 43 H 0.10 0.50 8.09 -2.39 -0.02 0.48 16 44 H 0.11 0.81 7.96 -2.39 -0.02 0.79 16 45 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.09 1.87 8.10 -2.39 -0.02 1.85 16 48 H 0.04 1.33 7.19 -2.38 -0.02 1.31 16 Total: -1.00 -85.84 412.54 0.32 -85.52 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -0.59 Total: 23.52 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 5.79 Total: 0.08 kcal Atomic # 7 Polarization: -85.25 SS G_CDS: -4.11 Total: -89.36 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: -1.63 Total: -55.57 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -85.84 0.32 -85.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062694327.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.776 kcal (2) G-P(sol) polarization free energy of solvation -85.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds