Wall clock time and date at job start Sat Apr 11 2020 07:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42893 * 109.46688 * 2 1 4 4 C 1.42906 * 113.99670 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.47284 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99788 * 0.02562 * 5 4 3 7 7 N 1.34775 * 119.99836 * 180.02562 * 5 4 3 8 8 C 1.46931 * 120.60689 * 359.97438 * 7 5 4 9 9 C 1.53196 * 108.77131 * 233.57988 * 8 7 5 10 10 C 1.53039 * 109.33748 * 305.41286 * 9 8 7 11 11 C 1.53005 * 109.45951 * 181.36946 * 10 9 8 12 12 N 1.46493 * 109.46346 * 301.34414 * 10 9 8 13 13 C 1.34772 * 120.00461 * 179.97438 * 12 10 9 14 14 O 1.21282 * 119.99812 * 0.02562 * 13 12 10 15 15 C 1.50700 * 120.00296 * 179.97438 * 13 12 10 16 16 S 1.81001 * 109.47372 * 180.02562 * 15 13 12 17 17 C 1.76193 * 100.00106 * 180.02562 * 16 15 13 18 18 H 1.07992 * 120.00100 * 0.02562 * 17 16 15 19 19 C 1.38804 * 119.99778 * 180.02562 * 17 16 15 20 20 N 1.31629 * 120.00053 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99858 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47159 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46988 * 119.99885 * 21 19 17 24 24 H 1.48489 * 109.47163 * 240.00163 * 21 19 17 25 25 C 1.53045 * 109.53694 * 61.35198 * 10 9 8 26 26 C 1.46928 * 120.62574 * 180.02562 * 7 5 4 27 27 H 1.09005 * 109.47007 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46806 * 300.00084 * 1 2 3 29 29 H 1.09000 * 109.47248 * 60.00167 * 1 2 3 30 30 H 1.08997 * 109.46806 * 239.99916 * 2 1 3 31 31 H 1.08998 * 109.46961 * 120.00282 * 2 1 3 32 32 H 1.09005 * 109.47233 * 59.99769 * 4 3 2 33 33 H 1.09005 * 109.47013 * 299.99680 * 4 3 2 34 34 H 1.08996 * 109.56502 * 113.80682 * 8 7 5 35 35 H 1.09001 * 109.61713 * 353.38104 * 8 7 5 36 36 H 1.09002 * 109.49815 * 185.44599 * 9 8 7 37 37 H 1.09000 * 109.49595 * 65.37996 * 9 8 7 38 38 H 1.08993 * 109.46896 * 60.00258 * 11 10 9 39 39 H 1.09000 * 109.46705 * 180.02562 * 11 10 9 40 40 H 1.09000 * 109.47060 * 300.00226 * 11 10 9 41 41 H 0.97002 * 120.00131 * 0.02562 * 12 10 9 42 42 H 1.09003 * 109.47578 * 300.00445 * 15 13 12 43 43 H 1.09001 * 109.46956 * 60.00047 * 15 13 12 44 44 H 0.97005 * 119.99566 * 180.02562 * 20 19 17 45 45 H 1.08993 * 109.49877 * 58.58562 * 25 10 9 46 46 H 1.09003 * 109.49434 * 178.65059 * 25 10 9 47 47 H 1.08997 * 109.58597 * 6.59803 * 26 7 5 48 48 H 1.09001 * 109.69741 * 246.24622 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8195 2.9162 -0.0012 6 8 2.9610 3.7729 -0.0006 7 7 5.1210 3.2663 -0.0023 8 6 6.1719 2.2394 -0.0024 9 6 7.1271 2.5115 1.1639 10 6 7.6497 3.9466 1.0667 11 6 8.6305 4.2105 2.2110 12 7 8.3344 4.1310 -0.2152 13 6 8.8788 5.3249 -0.5228 14 8 8.8024 6.2465 0.2618 15 6 9.5836 5.5143 -1.8413 16 16 10.2017 7.2116 -1.9567 17 6 10.9567 7.1548 -3.5477 18 1 10.9341 6.2417 -4.1238 19 6 11.5806 8.2838 -4.0604 20 7 11.6085 9.3966 -3.3580 21 14 12.3805 8.2238 -5.7475 22 1 12.2114 6.8673 -6.3275 23 1 11.7376 9.2251 -6.6359 24 1 13.8276 8.5315 -5.6204 25 6 6.4776 4.9258 1.1639 26 6 5.5154 4.6816 -0.0023 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8333 0.9767 -0.8908 33 1 3.8340 0.9765 0.8892 34 1 6.7220 2.2802 -0.9425 35 1 5.7209 1.2543 0.1169 36 1 7.9647 1.8154 1.1182 37 1 6.5964 2.3807 2.1070 38 1 9.4660 3.5141 2.1413 39 1 9.0025 5.2328 2.1422 40 1 8.1214 4.0729 3.1650 41 1 8.3952 3.3940 -0.8430 42 1 10.4196 4.8182 -1.9099 43 1 8.8856 5.3253 -2.6569 44 1 12.0442 10.1857 -3.7166 45 1 5.9525 4.7724 2.1066 46 1 6.8529 5.9482 1.1187 47 1 4.6309 5.3074 0.1167 48 1 6.0113 4.9248 -0.9420 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072845581.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:10:43 Heat of formation + Delta-G solvation = -117.212197 kcal Electronic energy + Delta-G solvation = -28358.753869 eV Core-core repulsion = 24347.172633 eV Total energy + Delta-G solvation = -4011.581236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.96418 -39.63441 -38.14094 -37.26390 -34.73676 -32.44818 -32.32971 -31.95275 -31.43122 -29.25382 -28.53307 -27.39754 -25.50100 -23.89227 -23.37108 -23.15202 -21.39627 -20.11336 -18.89827 -17.98058 -17.68469 -16.97091 -16.88870 -16.46851 -15.99100 -15.74678 -15.18212 -15.11484 -14.82268 -14.46756 -14.33161 -14.12019 -13.98566 -13.80010 -13.33177 -13.20039 -13.10555 -12.93195 -12.77671 -12.65914 -12.29465 -12.08684 -12.02000 -11.84772 -11.71741 -11.66219 -11.43765 -11.09380 -11.06619 -10.99678 -10.77088 -10.73615 -10.13599 -9.93606 -9.82119 -9.23085 -9.10125 -9.05040 -8.77424 -8.25342 -6.51590 -6.23781 -3.94038 2.34106 2.38661 2.98909 3.05220 3.20118 3.26590 3.30677 3.41847 3.66673 4.15551 4.18444 4.22523 4.48718 4.56304 4.58595 4.64371 4.75289 4.79661 4.84827 4.88401 4.91034 5.00710 5.11710 5.14702 5.23263 5.24955 5.39189 5.47439 5.48709 5.55726 5.63194 5.70048 5.72250 5.74024 5.83747 5.87272 5.93575 6.06247 6.10852 6.33121 6.33980 6.63905 6.68548 7.09619 7.57992 7.68661 7.92425 8.33375 8.59323 9.21957 10.83623 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016877 B = 0.002183 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.671773 B =12823.620133 C =13682.667951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.365 6.365 4 C 0.046 3.954 5 C 0.515 3.485 6 O -0.518 6.518 7 N -0.609 5.609 8 C 0.104 3.896 9 C -0.137 4.137 10 C 0.181 3.819 11 C -0.164 4.164 12 N -0.732 5.732 13 C 0.536 3.464 14 O -0.511 6.511 15 C -0.155 4.155 16 S -0.058 6.058 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.145 4.145 26 C 0.117 3.883 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.395 0.605 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.268 0.732 45 H 0.071 0.929 46 H 0.104 0.896 47 H 0.093 0.907 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.029 -23.596 9.200 28.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.283 6.283 4 C -0.034 4.034 5 C 0.301 3.699 6 O -0.393 6.393 7 N -0.345 5.345 8 C -0.019 4.019 9 C -0.176 4.176 10 C 0.094 3.906 11 C -0.222 4.222 12 N -0.387 5.387 13 C 0.322 3.678 14 O -0.385 6.385 15 C -0.306 4.306 16 S 0.169 5.831 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.184 4.184 26 C -0.005 4.005 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.229 0.771 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.122 0.878 47 H 0.111 0.889 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.718 -21.238 10.523 27.900 hybrid contribution 1.027 -1.848 -2.337 3.151 sum -13.691 -23.086 8.187 28.061 Atomic orbital electron populations 1.21736 0.93303 1.02285 1.03562 1.22556 0.96101 0.83276 1.00170 1.88038 1.18445 1.26440 1.95396 1.22234 0.84017 0.94806 1.02309 1.20210 0.82259 0.90564 0.76826 1.90740 1.48759 1.51731 1.48022 1.48077 1.04777 1.07825 1.73835 1.21782 0.89637 0.91187 0.99305 1.22237 0.99447 0.96400 0.99485 1.20179 0.91925 0.93965 0.84512 1.22217 0.98718 1.04664 0.96573 1.46189 1.59078 1.13918 1.19562 1.20232 0.77651 0.81752 0.88151 1.90640 1.57198 1.40499 1.50158 1.23551 1.02511 1.08064 0.96443 1.85381 1.70666 1.02841 1.24242 1.22903 1.41589 1.00607 1.03297 0.90938 1.24991 0.95665 0.94555 0.98377 1.70024 1.41537 1.01427 1.37239 0.86125 0.78884 0.78264 0.82276 1.19646 1.20559 1.20567 1.22360 0.95124 1.02538 0.98367 1.21595 0.99277 0.80400 0.99195 0.90920 0.91648 0.91619 0.93147 0.93187 0.90324 0.90349 0.90785 0.89701 0.89682 0.89805 0.92596 0.89643 0.92224 0.77072 0.89389 0.89441 0.92224 0.91071 0.87758 0.88862 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.06 0.37 6.66 37.16 0.25 0.61 16 3 O -0.36 -3.87 9.88 -55.14 -0.54 -4.41 16 4 C 0.05 0.37 4.76 36.01 0.17 0.54 16 5 C 0.51 6.06 7.77 -10.98 -0.09 5.98 16 6 O -0.52 -8.63 15.91 -14.35 -0.23 -8.86 16 7 N -0.61 -6.03 2.97 -172.79 -0.51 -6.54 16 8 C 0.10 0.64 6.07 -3.71 -0.02 0.61 16 9 C -0.14 -0.87 4.96 -26.61 -0.13 -1.00 16 10 C 0.18 1.82 0.66 -131.78 -0.09 1.73 16 11 C -0.16 -1.80 8.40 37.16 0.31 -1.48 16 12 N -0.73 -8.39 4.10 -47.57 -0.20 -8.58 16 13 C 0.54 8.97 7.27 -10.99 -0.08 8.89 16 14 O -0.51 -10.31 12.08 5.56 0.07 -10.25 16 15 C -0.15 -2.95 6.16 36.01 0.22 -2.73 16 16 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 17 C -0.54 -15.02 9.50 30.94 0.29 -14.73 16 18 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 19 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 20 N -0.87 -25.92 13.22 55.49 0.73 -25.18 16 21 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 C -0.14 -1.71 4.66 -26.63 -0.12 -1.84 16 26 C 0.12 1.42 6.17 -3.73 -0.02 1.40 16 27 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.45 7.94 -51.93 -0.41 0.03 16 33 H 0.08 0.42 7.69 -51.93 -0.40 0.02 16 34 H 0.07 0.41 6.94 -51.93 -0.36 0.05 16 35 H 0.08 0.29 5.93 -51.93 -0.31 -0.01 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 1.25 6.17 -51.93 -0.32 0.93 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.39 3.45 7.27 -40.82 -0.30 3.15 16 42 H 0.09 1.55 8.14 -51.91 -0.42 1.13 16 43 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.10 1.56 6.20 -51.93 -0.32 1.23 16 47 H 0.09 1.30 7.00 -51.93 -0.36 0.94 16 48 H 0.07 0.95 7.74 -51.93 -0.40 0.55 16 LS Contribution 395.13 15.07 5.95 5.95 Total: -1.00 -36.80 395.13 -8.78 -45.58 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.80 Total: 0.37 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 0.98 Total: -0.57 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.02 Total: -40.30 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.71 Total: -23.51 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.80 -8.78 -45.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072845581.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.629 kcal (2) G-P(sol) polarization free energy of solvation -36.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds