Wall clock time and date at job start Sat Apr 11 2020 07:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42893 * 109.46688 * 2 1 4 4 C 1.42906 * 113.99670 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.47284 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99788 * 0.02562 * 5 4 3 7 7 N 1.34775 * 119.99836 * 180.02562 * 5 4 3 8 8 C 1.46931 * 120.60689 * 359.97438 * 7 5 4 9 9 C 1.53196 * 108.77131 * 233.57988 * 8 7 5 10 10 C 1.53039 * 109.33748 * 305.41286 * 9 8 7 11 11 C 1.53005 * 109.45951 * 181.36946 * 10 9 8 12 12 N 1.46493 * 109.46346 * 301.34414 * 10 9 8 13 13 C 1.34772 * 120.00461 * 179.97438 * 12 10 9 14 14 O 1.21282 * 119.99812 * 0.02562 * 13 12 10 15 15 C 1.50700 * 120.00296 * 179.97438 * 13 12 10 16 16 S 1.81001 * 109.47372 * 180.02562 * 15 13 12 17 17 C 1.76193 * 100.00106 * 180.02562 * 16 15 13 18 18 H 1.07992 * 120.00100 * 0.02562 * 17 16 15 19 19 C 1.38804 * 119.99778 * 180.02562 * 17 16 15 20 20 N 1.31629 * 120.00053 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99858 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47159 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46988 * 119.99885 * 21 19 17 24 24 H 1.48489 * 109.47163 * 240.00163 * 21 19 17 25 25 C 1.53045 * 109.53694 * 61.35198 * 10 9 8 26 26 C 1.46928 * 120.62574 * 180.02562 * 7 5 4 27 27 H 1.09005 * 109.47007 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46806 * 300.00084 * 1 2 3 29 29 H 1.09000 * 109.47248 * 60.00167 * 1 2 3 30 30 H 1.08997 * 109.46806 * 239.99916 * 2 1 3 31 31 H 1.08998 * 109.46961 * 120.00282 * 2 1 3 32 32 H 1.09005 * 109.47233 * 59.99769 * 4 3 2 33 33 H 1.09005 * 109.47013 * 299.99680 * 4 3 2 34 34 H 1.08996 * 109.56502 * 113.80682 * 8 7 5 35 35 H 1.09001 * 109.61713 * 353.38104 * 8 7 5 36 36 H 1.09002 * 109.49815 * 185.44599 * 9 8 7 37 37 H 1.09000 * 109.49595 * 65.37996 * 9 8 7 38 38 H 1.08993 * 109.46896 * 60.00258 * 11 10 9 39 39 H 1.09000 * 109.46705 * 180.02562 * 11 10 9 40 40 H 1.09000 * 109.47060 * 300.00226 * 11 10 9 41 41 H 0.97002 * 120.00131 * 0.02562 * 12 10 9 42 42 H 1.09003 * 109.47578 * 300.00445 * 15 13 12 43 43 H 1.09001 * 109.46956 * 60.00047 * 15 13 12 44 44 H 0.97005 * 119.99566 * 180.02562 * 20 19 17 45 45 H 1.08993 * 109.49877 * 58.58562 * 25 10 9 46 46 H 1.09003 * 109.49434 * 178.65059 * 25 10 9 47 47 H 1.08997 * 109.58597 * 6.59803 * 26 7 5 48 48 H 1.09001 * 109.69741 * 246.24622 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8195 2.9162 -0.0012 6 8 2.9610 3.7729 -0.0006 7 7 5.1210 3.2663 -0.0023 8 6 6.1719 2.2394 -0.0024 9 6 7.1271 2.5115 1.1639 10 6 7.6497 3.9466 1.0667 11 6 8.6305 4.2105 2.2110 12 7 8.3344 4.1310 -0.2152 13 6 8.8788 5.3249 -0.5228 14 8 8.8024 6.2465 0.2618 15 6 9.5836 5.5143 -1.8413 16 16 10.2017 7.2116 -1.9567 17 6 10.9567 7.1548 -3.5477 18 1 10.9341 6.2417 -4.1238 19 6 11.5806 8.2838 -4.0604 20 7 11.6085 9.3966 -3.3580 21 14 12.3805 8.2238 -5.7475 22 1 12.2114 6.8673 -6.3275 23 1 11.7376 9.2251 -6.6359 24 1 13.8276 8.5315 -5.6204 25 6 6.4776 4.9258 1.1639 26 6 5.5154 4.6816 -0.0023 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8333 0.9767 -0.8908 33 1 3.8340 0.9765 0.8892 34 1 6.7220 2.2802 -0.9425 35 1 5.7209 1.2543 0.1169 36 1 7.9647 1.8154 1.1182 37 1 6.5964 2.3807 2.1070 38 1 9.4660 3.5141 2.1413 39 1 9.0025 5.2328 2.1422 40 1 8.1214 4.0729 3.1650 41 1 8.3952 3.3940 -0.8430 42 1 10.4196 4.8182 -1.9099 43 1 8.8856 5.3253 -2.6569 44 1 12.0442 10.1857 -3.7166 45 1 5.9525 4.7724 2.1066 46 1 6.8529 5.9482 1.1187 47 1 4.6309 5.3074 0.1167 48 1 6.0113 4.9248 -0.9420 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072845581.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:10:43 Heat of formation + Delta-G solvation = -143.410911 kcal Electronic energy + Delta-G solvation = -28359.889930 eV Core-core repulsion = 24347.172633 eV Total energy + Delta-G solvation = -4012.717297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.88958 -40.65435 -38.91918 -38.23228 -35.73311 -34.58337 -33.38653 -32.68824 -32.08005 -30.29906 -29.67862 -28.11802 -27.65241 -24.57295 -24.22339 -23.65444 -22.48374 -21.08400 -19.90184 -19.79567 -18.49601 -17.86291 -17.62494 -17.48879 -16.88462 -16.86241 -16.64764 -16.42603 -16.05843 -15.71240 -15.28315 -15.03269 -14.85419 -14.82228 -14.62817 -14.36541 -13.96682 -13.89316 -13.70525 -13.58196 -13.21104 -13.15107 -13.06315 -12.93063 -12.78411 -12.69166 -12.57390 -12.31439 -12.21933 -12.15560 -11.93839 -11.69816 -11.63110 -11.15990 -10.85135 -10.64798 -10.53338 -10.24444 -10.11944 -9.68607 -8.64405 -8.34949 -6.11636 1.28282 1.40480 1.47911 1.50894 1.58453 1.66172 1.70799 2.26099 2.33808 2.86796 2.99409 3.33228 3.48180 3.58719 3.79395 3.86576 4.00014 4.02980 4.12842 4.17727 4.23011 4.29733 4.33706 4.35531 4.40970 4.47449 4.53010 4.54281 4.67777 4.75354 4.76077 4.82050 4.84927 4.92096 5.03552 5.04322 5.09104 5.14348 5.27861 5.40102 5.42098 5.46176 5.65442 6.10857 6.19827 6.37590 6.62538 7.06902 7.09783 7.35985 8.74287 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016877 B = 0.002183 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.671773 B =12823.620133 C =13682.667951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.050 3.950 3 O -0.407 6.407 4 C 0.050 3.950 5 C 0.505 3.495 6 O -0.583 6.583 7 N -0.602 5.602 8 C 0.095 3.905 9 C -0.127 4.127 10 C 0.179 3.821 11 C -0.161 4.161 12 N -0.706 5.706 13 C 0.537 3.463 14 O -0.551 6.551 15 C -0.131 4.131 16 S -0.149 6.149 17 C -0.545 4.545 18 H 0.082 0.918 19 C 0.012 3.988 20 N -0.911 5.911 21 Si 0.997 3.003 22 H -0.256 1.256 23 H -0.276 1.276 24 H -0.274 1.274 25 C -0.139 4.139 26 C 0.123 3.877 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.086 0.914 35 H 0.127 0.873 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.042 0.958 40 H 0.078 0.922 41 H 0.414 0.586 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.270 0.730 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.510 -28.592 8.551 32.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.025 4.025 3 O -0.327 6.327 4 C -0.029 4.029 5 C 0.294 3.706 6 O -0.462 6.462 7 N -0.336 5.336 8 C -0.026 4.026 9 C -0.165 4.165 10 C 0.094 3.906 11 C -0.219 4.219 12 N -0.361 5.361 13 C 0.323 3.677 14 O -0.429 6.429 15 C -0.283 4.283 16 S 0.078 5.922 17 C -0.693 4.693 18 H 0.100 0.900 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.819 3.181 22 H -0.179 1.179 23 H -0.202 1.202 24 H -0.199 1.199 25 C -0.178 4.178 26 C 0.000 4.000 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.104 0.896 35 H 0.145 0.855 36 H 0.136 0.864 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.097 0.903 41 H 0.251 0.749 42 H 0.126 0.874 43 H 0.121 0.879 44 H 0.079 0.921 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.180 -26.329 9.874 31.492 hybrid contribution 0.793 -0.360 -2.049 2.226 sum -13.386 -26.688 7.826 30.866 Atomic orbital electron populations 1.21796 0.93722 1.03433 1.02227 1.22772 0.95919 0.81874 1.01974 1.87999 1.19976 1.28931 1.95804 1.22389 0.83372 0.91726 1.05406 1.21113 0.81965 0.92067 0.75411 1.90712 1.50622 1.53794 1.51077 1.48133 1.05463 1.07346 1.72707 1.22212 0.88839 0.91732 0.99838 1.22245 1.00569 0.93346 1.00330 1.20366 0.90730 0.96372 0.83182 1.22162 0.99472 1.02354 0.97873 1.45912 1.57203 1.12476 1.20487 1.19902 0.77909 0.82929 0.86981 1.90657 1.58875 1.42316 1.51022 1.23398 1.03511 1.02766 0.98585 1.85562 1.71674 1.10130 1.24867 1.23243 1.41448 1.01140 1.03458 0.89993 1.26115 0.96208 0.94004 1.02903 1.70190 1.42757 1.02346 1.39516 0.84929 0.77687 0.78954 0.76538 1.17948 1.20153 1.19903 1.22231 0.95839 1.01128 0.98565 1.21283 0.97913 0.82228 0.98594 0.88502 0.92903 0.93069 0.91370 0.91119 0.87136 0.86688 0.89555 0.85524 0.86392 0.88414 0.91167 0.93922 0.90334 0.74852 0.87381 0.87868 0.92070 0.90261 0.91659 0.91792 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 71.98 0.74 -0.92 16 2 C 0.05 0.52 6.66 71.98 0.48 1.00 16 3 O -0.41 -7.88 9.88 -129.95 -1.28 -9.17 16 4 C 0.05 0.62 4.76 71.24 0.34 0.96 16 5 C 0.51 11.24 7.77 87.66 0.68 11.92 16 6 O -0.58 -20.15 15.91 16.00 0.25 -19.90 16 7 N -0.60 -10.70 2.97 -818.96 -2.43 -13.14 16 8 C 0.09 0.69 6.07 86.36 0.52 1.21 16 9 C -0.13 -0.97 4.96 30.67 0.15 -0.82 16 10 C 0.18 3.24 0.66 3.63 0.00 3.24 16 11 C -0.16 -3.28 8.40 71.98 0.60 -2.68 16 12 N -0.71 -14.72 4.10 -422.81 -1.73 -16.45 16 13 C 0.54 17.97 7.27 87.66 0.64 18.61 16 14 O -0.55 -23.39 12.08 -3.03 -0.04 -23.43 16 15 C -0.13 -4.94 6.16 71.24 0.44 -4.50 16 16 S -0.15 -8.15 20.57 -56.49 -1.16 -9.31 16 17 C -0.54 -30.85 9.50 67.96 0.65 -30.21 16 18 H 0.08 4.31 7.80 -2.91 -0.02 4.28 16 19 C 0.01 0.70 5.49 84.86 0.47 1.17 16 20 N -0.91 -56.03 13.22 21.65 0.29 -55.74 16 21 Si 1.00 43.53 29.55 68.60 2.03 45.55 16 22 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 23 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 C -0.14 -3.33 4.66 30.66 0.14 -3.18 16 26 C 0.12 3.07 6.17 86.35 0.53 3.60 16 27 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.11 0.67 7.94 -2.38 -0.02 0.65 16 33 H 0.12 0.58 7.69 -2.38 -0.02 0.57 16 34 H 0.09 0.48 6.94 -2.39 -0.02 0.46 16 35 H 0.13 -0.02 5.93 -2.39 -0.01 -0.04 16 36 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.04 1.27 6.17 -2.39 -0.01 1.26 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.41 5.62 7.27 -92.71 -0.67 4.95 16 42 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 43 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 44 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 45 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.06 2.12 6.20 -2.39 -0.01 2.10 16 47 H 0.06 1.96 7.00 -2.39 -0.02 1.95 16 48 H 0.06 1.60 7.74 -2.39 -0.02 1.58 16 Total: -1.00 -89.12 395.13 2.59 -86.52 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.29 Total: 15.66 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 6.39 Total: -0.60 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -3.88 Total: -85.33 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: -1.07 Total: -52.50 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -8.15 SS G_CDS: -1.16 Total: -9.31 kcal Total: -89.12 2.59 -86.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072845581.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.886 kcal (2) G-P(sol) polarization free energy of solvation -89.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds