Wall clock time and date at job start Sat Apr 11 2020 07:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42904 * 109.47176 * 2 1 4 4 C 1.42898 * 114.00166 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47221 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99892 * 359.97438 * 5 4 3 7 7 N 1.34772 * 120.00296 * 179.97438 * 5 4 3 8 8 C 1.46493 * 120.00461 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.46027 * 299.97347 * 8 7 5 10 10 C 1.53039 * 109.46346 * 179.97438 * 8 7 5 11 11 C 1.53196 * 109.33748 * 301.34414 * 10 8 7 12 12 N 1.46931 * 108.77131 * 305.41286 * 11 10 8 13 13 C 1.34775 * 120.60689 * 233.57988 * 12 11 10 14 14 O 1.21283 * 120.00376 * 179.97438 * 13 12 11 15 15 C 1.50706 * 119.99836 * 359.97438 * 13 12 11 16 16 S 1.80998 * 109.47083 * 180.02562 * 15 13 12 17 17 C 1.76201 * 99.99898 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00017 * 359.97438 * 17 16 15 19 19 C 1.38799 * 120.00314 * 180.02562 * 17 16 15 20 20 N 1.31630 * 119.99758 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00275 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46970 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47053 * 119.99392 * 21 19 17 24 24 H 1.48501 * 109.47001 * 239.99477 * 21 19 17 25 25 C 1.46928 * 118.76737 * 53.55408 * 12 11 10 26 26 C 1.53045 * 109.44863 * 59.93736 * 8 7 5 27 27 H 1.08998 * 109.46879 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46851 * 300.00254 * 1 2 3 29 29 H 1.09000 * 109.47075 * 60.00255 * 1 2 3 30 30 H 1.09005 * 109.47111 * 240.00258 * 2 1 3 31 31 H 1.08997 * 109.47343 * 120.00185 * 2 1 3 32 32 H 1.09003 * 109.47329 * 59.99366 * 4 3 2 33 33 H 1.09001 * 109.46996 * 299.99892 * 4 3 2 34 34 H 0.97002 * 119.99408 * 359.97438 * 7 5 4 35 35 H 1.08993 * 109.46896 * 300.02595 * 9 8 7 36 36 H 1.09000 * 109.46705 * 60.02602 * 9 8 7 37 37 H 1.09000 * 109.47060 * 180.02562 * 9 8 7 38 38 H 1.09002 * 109.49756 * 61.31138 * 10 8 7 39 39 H 1.09000 * 109.49883 * 181.37881 * 10 8 7 40 40 H 1.08996 * 109.58760 * 65.17188 * 11 10 8 41 41 H 1.09001 * 109.58519 * 185.59185 * 11 10 8 42 42 H 1.09005 * 109.47141 * 300.00250 * 15 13 12 43 43 H 1.09005 * 109.46868 * 60.00194 * 15 13 12 44 44 H 0.97001 * 120.00501 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.58597 * 186.62384 * 25 12 11 46 46 H 1.09001 * 109.69741 * 66.27202 * 25 12 11 47 47 H 1.08993 * 109.49877 * 178.60252 * 26 8 7 48 48 H 1.09003 * 109.49434 * 298.66749 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8195 2.9162 0.0001 6 8 2.9610 3.7729 0.0005 7 7 5.1209 3.2664 0.0002 8 6 5.4987 4.6818 0.0003 9 6 4.9339 5.3602 -1.2494 10 6 7.0243 4.8024 0.0011 11 6 7.5886 4.0928 1.2360 12 7 6.9387 4.6409 2.4344 13 6 7.6755 5.1203 3.4561 14 8 7.1276 5.5706 4.4399 15 6 9.1802 5.0969 3.3759 16 16 9.8761 5.8031 4.8902 17 6 11.5956 5.6552 4.5346 18 1 11.9183 5.2251 3.5980 19 6 12.5353 6.0905 5.4587 20 7 12.1420 6.6142 6.6005 21 14 14.3582 5.9330 5.0821 22 1 14.5354 5.3156 3.7432 23 1 14.9841 7.2796 5.0934 24 1 15.0041 5.0782 6.1104 25 6 5.4709 4.6569 2.4980 26 6 4.9315 5.3605 1.2493 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.8334 0.9767 -0.8908 33 1 3.8340 0.9765 0.8892 34 1 5.8075 2.5811 0.0003 35 1 5.3368 4.8762 -2.1390 36 1 3.8473 5.2744 -1.2496 37 1 5.2153 6.4133 -1.2497 38 1 7.4263 4.3393 -0.9000 39 1 7.3061 5.8550 0.0259 40 1 7.3864 3.0240 1.1676 41 1 8.6641 4.2603 1.2941 42 1 9.5222 4.0679 3.2648 43 1 9.5075 5.6833 2.5173 44 1 12.7987 6.9188 7.2462 45 1 5.1497 5.1964 3.3890 46 1 5.0935 3.6350 2.5336 47 1 5.2329 6.4078 1.2629 48 1 3.8435 5.2952 1.2365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072886709.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:10:46 Heat of formation + Delta-G solvation = -143.003904 kcal Electronic energy + Delta-G solvation = -28354.788135 eV Core-core repulsion = 24342.088487 eV Total energy + Delta-G solvation = -4012.699648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.89731 -40.59073 -39.08657 -38.09591 -35.70470 -34.57079 -33.39081 -32.62141 -32.17826 -30.78810 -28.96738 -28.33241 -27.64056 -24.54952 -24.30255 -23.67744 -22.37482 -21.16616 -20.11333 -19.50031 -18.43128 -18.07562 -17.65919 -17.37692 -16.97058 -16.85931 -16.77859 -16.15183 -15.94527 -15.81314 -15.45640 -15.12284 -14.90067 -14.61939 -14.56820 -14.40958 -13.99407 -13.87752 -13.65852 -13.56357 -13.25504 -13.14864 -13.05512 -12.91301 -12.78024 -12.74897 -12.58365 -12.33168 -12.21331 -12.16681 -11.93357 -11.72130 -11.60654 -11.14874 -10.89754 -10.64066 -10.51571 -10.22794 -10.14011 -9.65553 -8.66246 -8.33324 -6.11701 1.26673 1.42766 1.47341 1.57338 1.58477 1.63855 1.84574 2.09283 2.28475 3.01168 3.04487 3.25844 3.53404 3.60868 3.81077 3.85002 3.87503 4.02912 4.16917 4.19053 4.23178 4.27497 4.33630 4.36416 4.37541 4.44265 4.51336 4.51712 4.69678 4.75308 4.77483 4.80376 4.83577 4.91020 5.01873 5.03286 5.07549 5.13881 5.26881 5.34086 5.43589 5.53378 5.59299 6.13524 6.21346 6.29190 6.63718 7.08060 7.14444 7.31394 8.76130 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.021152 B = 0.002063 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.422231 B =13567.344739 C =13825.267684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.402 6.402 4 C 0.042 3.958 5 C 0.511 3.489 6 O -0.560 6.560 7 N -0.706 5.706 8 C 0.185 3.815 9 C -0.157 4.157 10 C -0.129 4.129 11 C 0.096 3.904 12 N -0.603 5.603 13 C 0.531 3.469 14 O -0.571 6.571 15 C -0.121 4.121 16 S -0.159 6.159 17 C -0.541 4.541 18 H 0.086 0.914 19 C 0.011 3.989 20 N -0.913 5.913 21 Si 0.999 3.001 22 H -0.253 1.253 23 H -0.276 1.276 24 H -0.276 1.276 25 C 0.123 3.877 26 C -0.138 4.138 27 H 0.094 0.906 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.416 0.584 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.270 0.730 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.066 0.934 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.680 -15.926 -22.662 31.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.322 6.322 4 C -0.037 4.037 5 C 0.298 3.702 6 O -0.437 6.437 7 N -0.362 5.362 8 C 0.100 3.900 9 C -0.215 4.215 10 C -0.167 4.167 11 C -0.026 4.026 12 N -0.337 5.337 13 C 0.319 3.681 14 O -0.450 6.450 15 C -0.272 4.272 16 S 0.068 5.932 17 C -0.689 4.689 18 H 0.104 0.896 19 C -0.193 4.193 20 N -0.550 5.550 21 Si 0.821 3.179 22 H -0.176 1.176 23 H -0.202 1.202 24 H -0.201 1.201 25 C 0.001 3.999 26 C -0.177 4.177 27 H 0.112 0.888 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.128 0.872 33 H 0.118 0.882 34 H 0.254 0.746 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.139 0.861 39 H 0.100 0.900 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.085 0.915 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.197 -14.441 -21.076 30.251 hybrid contribution 1.737 -0.566 -0.546 1.907 sum -14.460 -15.007 -21.622 30.030 Atomic orbital electron populations 1.21778 0.93578 1.03356 1.02321 1.22739 0.95998 0.82162 1.01636 1.87984 1.19951 1.28476 1.95768 1.22366 0.83341 0.93043 1.04984 1.20738 0.82705 0.91316 0.75467 1.90678 1.50835 1.52821 1.49404 1.45900 1.06808 1.08207 1.75236 1.20197 0.94875 0.80616 0.94351 1.22130 1.01883 1.00905 0.96554 1.22242 0.92051 1.03350 0.99100 1.22128 0.98785 0.99051 0.82607 1.48086 1.06311 1.61469 1.17876 1.20238 0.88949 0.76505 0.82398 1.90685 1.73717 1.47217 1.33344 1.23361 0.93976 1.06069 1.03748 1.85706 1.04566 1.80975 1.21936 1.23230 0.90957 1.47600 1.07144 0.89573 1.26151 1.05220 0.93863 0.94077 1.70202 1.36469 1.39675 1.08609 0.84894 0.75822 0.78157 0.79004 1.17635 1.20155 1.20104 1.21388 0.78977 1.00978 0.98599 1.22251 1.01849 0.99668 0.93948 0.88752 0.93048 0.92633 0.91346 0.91946 0.87250 0.88178 0.74553 0.90725 0.92765 0.91405 0.86102 0.90014 0.88378 0.88213 0.86983 0.87108 0.92087 0.92162 0.90801 0.91543 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.28 71.98 0.74 -0.94 16 2 C 0.05 0.55 6.66 71.98 0.48 1.03 16 3 O -0.40 -7.40 9.88 -129.94 -1.28 -8.68 16 4 C 0.04 0.48 6.42 71.24 0.46 0.94 16 5 C 0.51 8.80 7.33 87.66 0.64 9.44 16 6 O -0.56 -15.22 12.72 16.00 0.20 -15.02 16 7 N -0.71 -8.09 4.10 -422.81 -1.73 -9.83 16 8 C 0.19 2.78 0.66 3.63 0.00 2.79 16 9 C -0.16 -2.45 8.40 71.98 0.60 -1.85 16 10 C -0.13 -1.46 4.96 30.67 0.15 -1.31 16 11 C 0.10 1.42 6.07 86.36 0.52 1.94 16 12 N -0.60 -15.51 2.97 -818.98 -2.43 -17.94 16 13 C 0.53 19.81 7.72 87.66 0.68 20.49 16 14 O -0.57 -27.35 15.27 -3.04 -0.05 -27.40 16 15 C -0.12 -4.62 4.50 71.24 0.32 -4.30 16 16 S -0.16 -8.77 20.57 -56.49 -1.16 -9.93 16 17 C -0.54 -30.26 9.50 67.95 0.65 -29.61 16 18 H 0.09 4.40 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.64 5.49 84.86 0.47 1.11 16 20 N -0.91 -55.87 13.22 21.65 0.29 -55.58 16 21 Si 1.00 42.76 29.55 68.60 2.03 44.79 16 22 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 23 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 24 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 25 C 0.12 3.15 6.17 86.34 0.53 3.68 16 26 C -0.14 -3.08 4.66 30.66 0.14 -2.93 16 27 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.10 0.70 8.14 -2.39 -0.02 0.69 16 34 H 0.42 1.87 7.27 -92.71 -0.67 1.20 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.05 1.17 6.17 -2.39 -0.01 1.16 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.10 0.85 6.94 -2.39 -0.02 0.84 16 41 H 0.10 1.47 5.93 -2.39 -0.01 1.46 16 42 H 0.11 3.76 7.94 -2.39 -0.02 3.74 16 43 H 0.11 3.76 7.69 -2.39 -0.02 3.74 16 44 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 45 H 0.06 1.96 7.00 -2.39 -0.02 1.94 16 46 H 0.07 1.68 7.74 -2.39 -0.02 1.66 16 47 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.08 2.09 6.20 -2.39 -0.01 2.07 16 Total: -1.00 -86.58 395.13 2.53 -84.05 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.29 Total: 15.09 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 6.39 Total: 0.45 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -3.88 Total: -83.35 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -1.13 Total: -51.10 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.93 kcal Total: -86.58 2.53 -84.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072886709.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.955 kcal (2) G-P(sol) polarization free energy of solvation -86.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds