Wall clock time and date at job start Sat Apr 11 2020 07:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42901 * 109.47495 * 2 1 4 4 C 1.42894 * 114.00340 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.46966 * 180.02562 * 4 3 2 6 6 O 1.21278 * 120.00305 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99803 * 179.97438 * 5 4 3 8 8 C 1.46496 * 120.00132 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.46405 * 325.03247 * 8 7 5 10 10 C 1.53047 * 109.45804 * 85.00364 * 8 7 5 11 11 C 1.53188 * 109.31165 * 181.38902 * 10 8 7 12 12 N 1.46928 * 108.77721 * 305.35919 * 11 10 8 13 13 C 1.34773 * 120.63683 * 233.59295 * 12 11 10 14 14 O 1.21280 * 120.00485 * 185.75909 * 13 12 11 15 15 C 1.50704 * 119.99503 * 5.74805 * 13 12 11 16 16 S 1.81002 * 109.46703 * 180.02562 * 15 13 12 17 17 C 1.76200 * 99.99938 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00181 * 0.02562 * 17 16 15 19 19 C 1.38804 * 120.00093 * 180.02562 * 17 16 15 20 20 N 1.31627 * 119.99838 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99894 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47086 * 59.99820 * 21 19 17 23 23 H 1.48505 * 109.46951 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46959 * 299.99768 * 21 19 17 25 25 C 1.46927 * 118.73675 * 53.61164 * 12 11 10 26 26 H 1.09008 * 109.58481 * 66.17674 * 25 12 11 27 27 C 1.52991 * 109.59011 * 186.46000 * 25 12 11 28 28 C 1.53039 * 109.46411 * 205.06689 * 8 7 5 29 29 H 1.08994 * 109.47336 * 59.99520 * 1 2 3 30 30 H 1.09003 * 109.47274 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46862 * 299.99833 * 1 2 3 32 32 H 1.09002 * 109.47252 * 240.00541 * 2 1 3 33 33 H 1.09004 * 109.47482 * 120.00518 * 2 1 3 34 34 H 1.09002 * 109.47060 * 60.00579 * 4 3 2 35 35 H 1.08999 * 109.47617 * 300.00217 * 4 3 2 36 36 H 0.97004 * 120.00232 * 0.02562 * 7 5 4 37 37 H 1.08995 * 109.49603 * 61.43338 * 10 8 7 38 38 H 1.08999 * 109.52058 * 301.35477 * 10 8 7 39 39 H 1.09001 * 109.58716 * 185.57655 * 11 10 8 40 40 H 1.08993 * 109.70812 * 65.22082 * 11 10 8 41 41 H 1.08995 * 109.47667 * 299.99990 * 15 13 12 42 42 H 1.09000 * 109.46712 * 60.01149 * 15 13 12 43 43 H 0.96999 * 119.99971 * 179.97438 * 20 19 17 44 44 H 1.09009 * 109.47116 * 54.09012 * 27 25 12 45 45 H 1.09007 * 109.47319 * 174.08718 * 27 25 12 46 46 H 1.08996 * 109.47488 * 294.09187 * 27 25 12 47 47 H 1.08998 * 109.49575 * 58.66720 * 28 8 7 48 48 H 1.08995 * 109.50455 * 298.57037 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8194 2.9161 0.0001 6 8 2.9610 3.7729 0.0015 7 7 5.1209 3.2663 0.0002 8 6 5.4987 4.6817 0.0003 9 1 4.7787 5.2498 -0.5887 10 6 5.5086 5.2066 1.4379 11 6 5.8701 6.6952 1.4312 12 7 7.1419 6.8698 0.7164 13 6 8.1709 7.5206 1.2944 14 8 9.1776 7.7499 0.6581 15 6 8.0704 7.9635 2.7314 16 16 9.6000 8.8034 3.2121 17 6 9.2178 9.2011 4.8855 18 1 8.2624 8.9191 5.3029 19 6 10.1445 9.8767 5.6674 20 7 11.3086 10.2208 5.1585 21 14 9.7395 10.2976 7.4417 22 1 9.4745 9.0479 8.1988 23 1 10.8871 11.0134 8.0549 24 1 8.5353 11.1657 7.4820 25 6 7.2704 6.3218 -0.6408 26 1 6.6007 6.8555 -1.3153 27 6 8.7142 6.4775 -1.1222 28 6 6.8931 4.8373 -0.6109 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8332 0.9767 -0.8909 35 1 3.8341 0.9764 0.8891 36 1 5.8075 2.5811 -0.0005 37 1 6.2462 4.6556 2.0213 38 1 4.5216 5.0739 1.8809 39 1 5.9755 7.0503 2.4564 40 1 5.0870 7.2614 0.9272 41 1 7.2299 8.6485 2.8426 42 1 7.9172 7.0935 3.3698 43 1 11.9561 10.6933 5.7048 44 1 9.3904 6.0291 -0.3942 45 1 8.8325 5.9779 -2.0838 46 1 8.9486 7.5363 -1.2316 47 1 6.8912 4.4420 -1.6266 48 1 7.6177 4.2899 -0.0082 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074791811.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:22 Heat of formation + Delta-G solvation = -134.728467 kcal Electronic energy + Delta-G solvation = -27801.566877 eV Core-core repulsion = 23789.226079 eV Total energy + Delta-G solvation = -4012.340798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.69972 -40.76078 -38.90380 -38.15355 -35.72665 -34.58591 -34.24488 -32.80888 -32.10355 -30.45388 -28.80973 -27.99429 -27.62324 -25.17522 -23.67994 -23.43739 -22.23815 -21.53446 -20.40992 -19.44600 -18.22163 -18.01015 -17.70726 -17.40104 -17.20745 -16.87812 -16.73315 -16.61776 -15.95407 -15.78414 -15.40894 -15.17092 -15.02626 -14.64081 -14.51915 -14.39408 -13.92321 -13.87645 -13.57285 -13.44113 -13.25312 -13.18564 -13.08252 -12.97925 -12.87178 -12.72846 -12.60784 -12.31509 -12.16602 -12.08820 -12.03245 -11.72510 -11.72078 -11.13107 -10.89804 -10.65380 -10.27432 -10.12902 -10.11836 -9.64272 -8.65527 -8.34587 -6.12011 1.25906 1.42954 1.45249 1.54833 1.56824 1.59435 1.81260 2.08277 2.27761 2.99312 3.01943 3.24966 3.52722 3.72689 3.74511 3.77970 3.96553 4.02604 4.17178 4.19368 4.22038 4.25937 4.32683 4.35592 4.36551 4.39261 4.47034 4.51697 4.53149 4.66353 4.80315 4.83512 4.85189 4.89946 4.98258 5.03551 5.09152 5.26961 5.27420 5.40168 5.41389 5.42958 5.72619 6.11730 6.19294 6.31067 6.56049 7.06709 7.20863 7.23461 8.74176 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015583 B = 0.002046 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.341505 B =13684.664840 C =15117.988988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.050 3.950 3 O -0.404 6.404 4 C 0.044 3.956 5 C 0.510 3.490 6 O -0.572 6.572 7 N -0.709 5.709 8 C 0.153 3.847 9 H 0.079 0.921 10 C -0.137 4.137 11 C 0.107 3.893 12 N -0.606 5.606 13 C 0.535 3.465 14 O -0.545 6.545 15 C -0.129 4.129 16 S -0.144 6.144 17 C -0.548 4.548 18 H 0.080 0.920 19 C 0.015 3.985 20 N -0.910 5.910 21 Si 0.996 3.004 22 H -0.262 1.262 23 H -0.278 1.278 24 H -0.263 1.263 25 C 0.146 3.854 26 H 0.085 0.915 27 C -0.131 4.131 28 C -0.124 4.124 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.418 0.582 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.271 0.729 44 H 0.043 0.957 45 H 0.071 0.929 46 H 0.051 0.949 47 H 0.106 0.894 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.787 -23.892 -12.584 32.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.025 4.025 3 O -0.324 6.324 4 C -0.035 4.035 5 C 0.297 3.703 6 O -0.450 6.450 7 N -0.362 5.362 8 C 0.048 3.952 9 H 0.097 0.903 10 C -0.176 4.176 11 C -0.016 4.016 12 N -0.341 5.341 13 C 0.322 3.678 14 O -0.422 6.422 15 C -0.280 4.280 16 S 0.083 5.917 17 C -0.696 4.696 18 H 0.098 0.902 19 C -0.190 4.190 20 N -0.546 5.546 21 Si 0.817 3.183 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.188 1.188 25 C 0.043 3.957 26 H 0.103 0.897 27 C -0.188 4.188 28 C -0.162 4.162 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.256 0.744 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.080 0.920 44 H 0.062 0.938 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.125 0.875 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.895 -22.731 -13.521 31.384 hybrid contribution -0.601 -0.057 1.869 1.964 sum -17.496 -22.788 -11.652 31.003 Atomic orbital electron populations 1.21786 0.93588 1.03395 1.02344 1.22753 0.95997 0.82039 1.01759 1.87984 1.19958 1.28659 1.95797 1.22348 0.83360 0.92488 1.05294 1.20891 0.82578 0.91607 0.75242 1.90729 1.50829 1.53377 1.50080 1.45802 1.06889 1.08517 1.75038 1.20813 0.96504 0.81921 0.95978 0.90309 1.22231 1.02526 0.95257 0.97590 1.21857 0.84493 0.96886 0.98386 1.48169 1.13223 1.55964 1.16775 1.19994 0.82845 0.77227 0.87688 1.90749 1.32159 1.55571 1.63764 1.23454 1.03733 1.04155 0.96670 1.85470 1.19172 1.73037 1.13985 1.23165 1.05398 1.43739 0.97319 0.90189 1.26087 0.94118 0.94555 1.04206 1.70167 1.07399 1.38214 1.38817 0.85046 0.78115 0.78836 0.76271 1.18678 1.20303 1.18804 1.21335 0.98480 0.93850 0.82022 0.89742 1.22023 0.94036 1.02442 1.00272 1.22196 0.95059 0.95458 1.03506 0.92761 0.88688 0.92918 0.91393 0.91636 0.87185 0.87570 0.74420 0.90759 0.90586 0.89072 0.89826 0.88084 0.87921 0.91991 0.93826 0.90991 0.92974 0.87527 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.28 71.98 0.74 -0.79 16 2 C 0.05 0.49 6.66 71.98 0.48 0.97 16 3 O -0.40 -7.12 9.88 -129.94 -1.28 -8.40 16 4 C 0.04 0.47 6.42 71.24 0.46 0.93 16 5 C 0.51 8.83 7.87 87.66 0.69 9.52 16 6 O -0.57 -16.22 16.16 16.01 0.26 -15.97 16 7 N -0.71 -8.29 5.08 -442.40 -2.25 -10.54 16 8 C 0.15 2.36 2.42 45.02 0.11 2.47 16 9 H 0.08 1.50 7.58 -2.39 -0.02 1.48 16 10 C -0.14 -2.44 5.65 30.67 0.17 -2.27 16 11 C 0.11 2.25 6.35 86.36 0.55 2.80 16 12 N -0.61 -15.94 2.97 -795.04 -2.36 -18.31 16 13 C 0.53 19.62 7.52 87.66 0.66 20.28 16 14 O -0.54 -23.83 11.43 -3.03 -0.03 -23.87 16 15 C -0.13 -5.18 4.51 71.24 0.32 -4.86 16 16 S -0.14 -7.96 20.57 -56.49 -1.16 -9.12 16 17 C -0.55 -31.41 9.50 67.96 0.65 -30.77 16 18 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 19 C 0.02 0.87 5.49 84.86 0.47 1.34 16 20 N -0.91 -55.80 13.22 21.65 0.29 -55.51 16 21 Si 1.00 43.71 29.55 68.60 2.03 45.73 16 22 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 23 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 25 C 0.15 3.10 3.48 44.97 0.16 3.26 16 26 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 27 C -0.13 -3.37 7.62 71.98 0.55 -2.82 16 28 C -0.12 -1.75 4.85 30.67 0.15 -1.60 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.42 2.03 8.60 -92.71 -0.80 1.23 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.09 1.99 5.93 -2.39 -0.01 1.97 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.10 3.76 7.71 -2.40 -0.02 3.75 16 42 H 0.10 3.78 7.93 -2.39 -0.02 3.76 16 43 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 44 H 0.04 1.34 6.94 -2.38 -0.02 1.33 16 45 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 46 H 0.05 1.69 6.56 -2.39 -0.02 1.68 16 47 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -83.94 400.14 1.78 -82.16 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.16 Total: 15.36 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 6.14 Total: -1.54 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -4.32 Total: -84.36 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -1.06 Total: -48.24 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -7.96 SS G_CDS: -1.16 Total: -9.12 kcal Total: -83.94 1.78 -82.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074791811.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.573 kcal (2) G-P(sol) polarization free energy of solvation -83.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds