Wall clock time and date at job start Sat Apr 11 2020 07:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42895 * 109.47481 * 2 1 4 4 C 1.42897 * 114.00133 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.46922 * 180.02562 * 4 3 2 6 6 O 1.21275 * 120.00120 * 0.02562 * 5 4 3 7 7 N 1.34784 * 119.99588 * 180.02562 * 5 4 3 8 8 C 1.46502 * 119.99570 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.45074 * 35.03245 * 8 7 5 10 10 C 1.53042 * 109.45642 * 275.06464 * 8 7 5 11 11 C 1.53628 * 109.23954 * 178.49302 * 10 8 7 12 12 N 1.46930 * 108.54227 * 54.85509 * 11 10 8 13 13 C 1.34776 * 120.62600 * 126.36750 * 12 11 10 14 14 O 1.21289 * 119.99488 * 173.92862 * 13 12 11 15 15 C 1.50700 * 120.00453 * 353.93198 * 13 12 11 16 16 S 1.80998 * 109.47260 * 179.97438 * 15 13 12 17 17 C 1.76197 * 100.00119 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99664 * 0.02562 * 17 16 15 19 19 C 1.38795 * 120.00048 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99768 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00098 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47187 * 90.00614 * 21 19 17 23 23 H 1.48507 * 109.47058 * 210.00373 * 21 19 17 24 24 H 1.48498 * 109.47089 * 329.99996 * 21 19 17 25 25 C 1.46918 * 118.74089 * 306.09325 * 12 11 10 26 26 H 1.09001 * 109.59224 * 294.07281 * 25 12 11 27 27 C 1.52998 * 109.59144 * 173.64541 * 25 12 11 28 28 C 1.53043 * 109.45749 * 154.99926 * 8 7 5 29 29 H 1.09004 * 109.47221 * 299.99327 * 1 2 3 30 30 H 1.09001 * 109.47603 * 59.99319 * 1 2 3 31 31 H 1.09003 * 109.47942 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46820 * 240.00362 * 2 1 3 33 33 H 1.08994 * 109.47027 * 120.00947 * 2 1 3 34 34 H 1.08998 * 109.46653 * 60.00805 * 4 3 2 35 35 H 1.08992 * 109.47380 * 300.00917 * 4 3 2 36 36 H 0.96993 * 120.00067 * 0.02562 * 7 5 4 37 37 H 1.09002 * 109.50003 * 298.56372 * 10 8 7 38 38 H 1.08994 * 109.49870 * 58.63586 * 10 8 7 39 39 H 1.08996 * 109.74015 * 295.12297 * 11 10 8 40 40 H 1.09000 * 109.66770 * 174.54823 * 11 10 8 41 41 H 1.08996 * 109.47037 * 300.00405 * 15 13 12 42 42 H 1.09003 * 109.46951 * 60.00057 * 15 13 12 43 43 H 0.96997 * 119.99565 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.46947 * 65.79629 * 27 25 12 45 45 H 1.08991 * 109.47877 * 185.80213 * 27 25 12 46 46 H 1.09002 * 109.47153 * 305.80555 * 27 25 12 47 47 H 1.09000 * 109.49885 * 61.43489 * 28 8 7 48 48 H 1.08997 * 109.52340 * 301.35054 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8194 2.9160 0.0012 6 8 2.9611 3.7727 0.0016 7 7 5.1210 3.2661 0.0013 8 6 5.4988 4.6816 0.0024 9 1 4.7794 5.2487 0.5930 10 6 5.5069 5.2081 -1.4346 11 6 5.8667 6.7017 -1.4244 12 7 7.1412 6.8704 -0.7129 13 6 8.1694 7.5219 -1.2915 14 8 9.1765 7.7513 -0.6557 15 6 8.0678 7.9655 -2.7281 16 16 9.5966 8.8063 -3.2096 17 6 9.2125 9.2058 -4.8821 18 1 8.2564 8.9248 -5.2985 19 6 10.1386 9.8816 -5.6645 20 7 9.8513 10.1805 -6.9138 21 14 11.7919 10.3682 -4.9441 22 1 12.7711 9.2746 -5.1690 23 1 12.2741 11.6079 -5.6045 24 1 11.6450 10.6091 -3.4862 25 6 7.2713 6.3208 0.6433 26 1 6.6026 6.8537 1.3194 27 6 8.7166 6.4726 1.1219 28 6 6.8939 4.8364 0.6122 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3635 -1.0276 -0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8932 -0.5140 0.8899 34 1 3.8339 0.9764 -0.8892 35 1 3.8333 0.9765 0.8906 36 1 5.8075 2.5809 0.0006 37 1 6.2439 4.6579 -2.0196 38 1 4.5193 5.0756 -1.8762 39 1 5.0858 7.2650 -0.9136 40 1 5.9694 7.0613 -2.4482 41 1 7.9143 7.0957 -3.3669 42 1 7.2268 8.6502 -2.8384 43 1 10.4984 10.6531 -7.4605 44 1 8.9543 7.5308 1.2299 45 1 8.8353 5.9735 2.0835 46 1 9.3899 6.0216 0.3929 47 1 7.6178 4.2897 0.0079 48 1 6.8939 4.4396 1.6273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074791812.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:27 Heat of formation + Delta-G solvation = -109.081618 kcal Electronic energy + Delta-G solvation = -27842.790712 eV Core-core repulsion = 23831.562045 eV Total energy + Delta-G solvation = -4011.228668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.74284 -39.88808 -38.23477 -37.21342 -34.82402 -33.26363 -32.44392 -32.17876 -31.41358 -29.21091 -28.02580 -27.16662 -25.60983 -24.30683 -23.26213 -22.53665 -21.36279 -20.82027 -19.14436 -17.68755 -17.51746 -17.37928 -16.89659 -16.55984 -16.10052 -16.02218 -15.43982 -15.21359 -14.96298 -14.74325 -14.39591 -14.23473 -13.73195 -13.64898 -13.35615 -13.29715 -13.18200 -12.88538 -12.79477 -12.57035 -12.38962 -12.13543 -11.92362 -11.90177 -11.77215 -11.72278 -11.31296 -11.25854 -11.15384 -11.01578 -10.91286 -10.58488 -10.19590 -10.13040 -9.85604 -9.42885 -9.00991 -8.85635 -8.57551 -8.49516 -6.92223 -6.29282 -4.00989 2.24964 2.35638 2.68978 2.92125 3.16364 3.32114 3.49520 3.50773 3.57868 4.23126 4.32247 4.38960 4.48245 4.54025 4.57354 4.60748 4.71441 4.74789 4.75712 4.82797 4.86863 5.00432 5.06134 5.09775 5.17810 5.20740 5.28858 5.38266 5.44423 5.48591 5.55596 5.68196 5.68489 5.71548 5.74515 5.80542 5.91391 5.99740 6.10114 6.18924 6.40150 6.55650 6.73106 7.09959 7.47090 7.85823 7.93744 8.41343 8.45641 9.16873 10.79959 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.019318 B = 0.002019 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.099520 B =13867.981018 C =14917.614419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.365 6.365 4 C 0.044 3.956 5 C 0.514 3.486 6 O -0.515 6.515 7 N -0.726 5.726 8 C 0.148 3.852 9 H 0.091 0.909 10 C -0.145 4.145 11 C 0.110 3.890 12 N -0.617 5.617 13 C 0.535 3.465 14 O -0.510 6.510 15 C -0.124 4.124 16 S -0.142 6.142 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.268 1.268 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.152 3.848 26 H 0.071 0.929 27 C -0.139 4.139 28 C -0.138 4.138 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.400 0.600 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.271 0.729 44 H 0.084 0.916 45 H 0.041 0.959 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.362 -21.532 16.995 30.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.283 6.283 4 C -0.036 4.036 5 C 0.299 3.701 6 O -0.389 6.389 7 N -0.379 5.379 8 C 0.044 3.956 9 H 0.109 0.891 10 C -0.185 4.185 11 C -0.013 4.013 12 N -0.354 5.354 13 C 0.323 3.677 14 O -0.385 6.385 15 C -0.275 4.275 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.193 1.193 23 H -0.200 1.200 24 H -0.159 1.159 25 C 0.048 3.952 26 H 0.089 0.911 27 C -0.196 4.196 28 C -0.177 4.177 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.234 0.766 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.060 0.940 46 H 0.086 0.914 47 H 0.094 0.906 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.594 -20.317 17.765 29.782 hybrid contribution -0.048 -0.741 -0.908 1.173 sum -12.642 -21.058 16.857 29.790 Atomic orbital electron populations 1.21736 0.93268 1.02338 1.03565 1.22560 0.96114 0.83192 1.00224 1.88032 1.18305 1.26529 1.95431 1.22184 0.84245 0.94547 1.02621 1.20263 0.82705 0.90619 0.76557 1.90752 1.49248 1.51674 1.47261 1.45986 1.06916 1.08724 1.76294 1.20983 0.96607 0.81075 0.96940 0.89062 1.22407 1.02987 0.96291 0.96788 1.21802 0.85322 0.95548 0.98671 1.48179 1.13646 1.57398 1.16189 1.20251 0.82338 0.76706 0.88395 1.90733 1.30491 1.53963 1.63333 1.23372 1.05087 1.04094 0.94927 1.84741 1.18620 1.72793 1.15440 1.22313 1.06660 1.43596 0.94296 0.89429 1.24715 0.98441 0.94052 0.94111 1.69942 1.36051 1.38977 1.06699 0.86730 0.83942 0.79068 0.82067 1.19269 1.19962 1.15925 1.21116 0.99166 0.91689 0.83246 0.91055 1.22212 0.93498 1.04472 0.99416 1.22329 0.95642 0.97824 1.01882 0.91657 0.91590 0.90891 0.93095 0.93167 0.90188 0.90298 0.76551 0.90906 0.90072 0.90916 0.88640 0.88683 0.88621 0.91956 0.89745 0.94033 0.91364 0.90618 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.28 37.15 0.38 -0.45 16 2 C 0.06 0.33 6.66 37.15 0.25 0.58 16 3 O -0.36 -3.47 9.87 -55.14 -0.54 -4.01 16 4 C 0.04 0.29 6.42 36.01 0.23 0.52 16 5 C 0.51 4.88 7.87 -10.98 -0.09 4.79 16 6 O -0.52 -7.38 16.16 -14.35 -0.23 -7.62 16 7 N -0.73 -5.12 5.08 -53.76 -0.27 -5.40 16 8 C 0.15 1.27 2.41 -67.89 -0.16 1.11 16 9 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 10 C -0.15 -1.39 5.67 -26.38 -0.15 -1.54 16 11 C 0.11 1.19 6.38 -3.48 -0.02 1.17 16 12 N -0.62 -8.00 2.97 -164.95 -0.49 -8.49 16 13 C 0.54 9.22 7.52 -10.99 -0.08 9.14 16 14 O -0.51 -10.17 11.43 5.55 0.06 -10.10 16 15 C -0.12 -2.38 4.51 36.01 0.16 -2.21 16 16 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 17 C -0.52 -14.92 10.04 30.94 0.31 -14.61 16 18 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 19 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 20 N -0.88 -26.48 13.97 55.49 0.78 -25.71 16 21 Si 0.86 21.68 27.74 -169.99 -4.71 16.96 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 24 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 25 C 0.15 1.65 3.49 -67.60 -0.24 1.41 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 C -0.14 -1.73 7.61 37.16 0.28 -1.44 16 28 C -0.14 -1.11 4.84 -26.61 -0.13 -1.24 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.40 1.64 8.60 -40.82 -0.35 1.29 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.10 1.07 5.93 -51.93 -0.31 0.76 16 41 H 0.09 1.71 7.94 -51.92 -0.41 1.30 16 42 H 0.10 1.73 7.69 -51.91 -0.40 1.33 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.08 1.27 6.54 -51.93 -0.34 0.93 16 45 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.99 6.96 -51.93 -0.36 0.63 16 47 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 397.48 15.07 5.99 5.99 Total: -1.00 -36.30 397.48 -8.83 -45.13 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -8.06 Total: -1.12 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 0.65 Total: -0.09 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.01 Total: -39.59 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.71 Total: -21.73 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.71 Total: 16.96 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.30 -8.83 -45.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074791812.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.952 kcal (2) G-P(sol) polarization free energy of solvation -36.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds