Wall clock time and date at job start Sat Apr 11 2020 07:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42895 * 109.47481 * 2 1 4 4 C 1.42897 * 114.00133 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.46922 * 180.02562 * 4 3 2 6 6 O 1.21275 * 120.00120 * 0.02562 * 5 4 3 7 7 N 1.34784 * 119.99588 * 180.02562 * 5 4 3 8 8 C 1.46502 * 119.99570 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.45074 * 35.03245 * 8 7 5 10 10 C 1.53042 * 109.45642 * 275.06464 * 8 7 5 11 11 C 1.53628 * 109.23954 * 178.49302 * 10 8 7 12 12 N 1.46930 * 108.54227 * 54.85509 * 11 10 8 13 13 C 1.34776 * 120.62600 * 126.36750 * 12 11 10 14 14 O 1.21289 * 119.99488 * 173.92862 * 13 12 11 15 15 C 1.50700 * 120.00453 * 353.93198 * 13 12 11 16 16 S 1.80998 * 109.47260 * 179.97438 * 15 13 12 17 17 C 1.76197 * 100.00119 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99664 * 0.02562 * 17 16 15 19 19 C 1.38795 * 120.00048 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99768 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00098 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47187 * 90.00614 * 21 19 17 23 23 H 1.48507 * 109.47058 * 210.00373 * 21 19 17 24 24 H 1.48498 * 109.47089 * 329.99996 * 21 19 17 25 25 C 1.46918 * 118.74089 * 306.09325 * 12 11 10 26 26 H 1.09001 * 109.59224 * 294.07281 * 25 12 11 27 27 C 1.52998 * 109.59144 * 173.64541 * 25 12 11 28 28 C 1.53043 * 109.45749 * 154.99926 * 8 7 5 29 29 H 1.09004 * 109.47221 * 299.99327 * 1 2 3 30 30 H 1.09001 * 109.47603 * 59.99319 * 1 2 3 31 31 H 1.09003 * 109.47942 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46820 * 240.00362 * 2 1 3 33 33 H 1.08994 * 109.47027 * 120.00947 * 2 1 3 34 34 H 1.08998 * 109.46653 * 60.00805 * 4 3 2 35 35 H 1.08992 * 109.47380 * 300.00917 * 4 3 2 36 36 H 0.96993 * 120.00067 * 0.02562 * 7 5 4 37 37 H 1.09002 * 109.50003 * 298.56372 * 10 8 7 38 38 H 1.08994 * 109.49870 * 58.63586 * 10 8 7 39 39 H 1.08996 * 109.74015 * 295.12297 * 11 10 8 40 40 H 1.09000 * 109.66770 * 174.54823 * 11 10 8 41 41 H 1.08996 * 109.47037 * 300.00405 * 15 13 12 42 42 H 1.09003 * 109.46951 * 60.00057 * 15 13 12 43 43 H 0.96997 * 119.99565 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.46947 * 65.79629 * 27 25 12 45 45 H 1.08991 * 109.47877 * 185.80213 * 27 25 12 46 46 H 1.09002 * 109.47153 * 305.80555 * 27 25 12 47 47 H 1.09000 * 109.49885 * 61.43489 * 28 8 7 48 48 H 1.08997 * 109.52340 * 301.35054 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8194 2.9160 0.0012 6 8 2.9611 3.7727 0.0016 7 7 5.1210 3.2661 0.0013 8 6 5.4988 4.6816 0.0024 9 1 4.7794 5.2487 0.5930 10 6 5.5069 5.2081 -1.4346 11 6 5.8667 6.7017 -1.4244 12 7 7.1412 6.8704 -0.7129 13 6 8.1694 7.5219 -1.2915 14 8 9.1765 7.7513 -0.6557 15 6 8.0678 7.9655 -2.7281 16 16 9.5966 8.8063 -3.2096 17 6 9.2125 9.2058 -4.8821 18 1 8.2564 8.9248 -5.2985 19 6 10.1386 9.8816 -5.6645 20 7 9.8513 10.1805 -6.9138 21 14 11.7919 10.3682 -4.9441 22 1 12.7711 9.2746 -5.1690 23 1 12.2741 11.6079 -5.6045 24 1 11.6450 10.6091 -3.4862 25 6 7.2713 6.3208 0.6433 26 1 6.6026 6.8537 1.3194 27 6 8.7166 6.4726 1.1219 28 6 6.8939 4.8364 0.6122 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3635 -1.0276 -0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8932 -0.5140 0.8899 34 1 3.8339 0.9764 -0.8892 35 1 3.8333 0.9765 0.8906 36 1 5.8075 2.5809 0.0006 37 1 6.2439 4.6579 -2.0196 38 1 4.5193 5.0756 -1.8762 39 1 5.0858 7.2650 -0.9136 40 1 5.9694 7.0613 -2.4482 41 1 7.9143 7.0957 -3.3669 42 1 7.2268 8.6502 -2.8384 43 1 10.4984 10.6531 -7.4605 44 1 8.9543 7.5308 1.2299 45 1 8.8353 5.9735 2.0835 46 1 9.3899 6.0216 0.3929 47 1 7.6178 4.2897 0.0079 48 1 6.8939 4.4396 1.6273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074791812.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:26 Heat of formation + Delta-G solvation = -134.409913 kcal Electronic energy + Delta-G solvation = -27843.889030 eV Core-core repulsion = 23831.562045 eV Total energy + Delta-G solvation = -4012.326985 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.72278 -40.77612 -38.91342 -38.16651 -35.74243 -34.67411 -34.26035 -32.81348 -32.10683 -30.51898 -28.81355 -28.00500 -27.80710 -25.20056 -23.68373 -23.46467 -22.26233 -21.54092 -20.46082 -19.48377 -18.23304 -18.02280 -17.74872 -17.41072 -17.26689 -17.06321 -16.74613 -16.62685 -15.93447 -15.73524 -15.40819 -15.15676 -15.02656 -14.90375 -14.65029 -14.52043 -13.93263 -13.88078 -13.60838 -13.47018 -13.32962 -13.25535 -13.16305 -12.99385 -12.98918 -12.74615 -12.59714 -12.31712 -12.16852 -12.08370 -12.04077 -11.86365 -11.72780 -11.17145 -10.90380 -10.65672 -10.52669 -10.16682 -10.13443 -9.67101 -8.98986 -8.51613 -6.22245 0.98290 1.31114 1.45972 1.53194 1.54127 1.57153 1.80702 2.04826 2.24819 2.68101 2.86586 3.01714 3.45529 3.67434 3.72779 3.76047 3.94541 4.00869 4.16921 4.18637 4.19013 4.21717 4.31626 4.34161 4.36220 4.38241 4.42923 4.51481 4.52480 4.65536 4.79334 4.83277 4.85204 4.89629 4.98720 5.03314 5.08917 5.26674 5.27202 5.38669 5.42767 5.70201 5.70894 6.11005 6.11507 6.26832 6.55756 6.93382 7.14373 7.23270 8.60863 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.019318 B = 0.002019 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.099520 B =13867.981018 C =14917.614419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.050 3.950 3 O -0.405 6.405 4 C 0.044 3.956 5 C 0.510 3.490 6 O -0.572 6.572 7 N -0.709 5.709 8 C 0.152 3.848 9 H 0.079 0.921 10 C -0.138 4.138 11 C 0.106 3.894 12 N -0.605 5.605 13 C 0.537 3.463 14 O -0.542 6.542 15 C -0.112 4.112 16 S -0.169 6.169 17 C -0.530 4.530 18 H 0.059 0.941 19 C 0.045 3.955 20 N -0.917 5.917 21 Si 0.916 3.084 22 H -0.261 1.261 23 H -0.260 1.260 24 H -0.236 1.236 25 C 0.146 3.854 26 H 0.086 0.914 27 C -0.131 4.131 28 C -0.124 4.124 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.419 0.581 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.277 0.723 44 H 0.054 0.946 45 H 0.071 0.929 46 H 0.045 0.955 47 H 0.079 0.921 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.146 -23.863 18.865 33.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.025 4.025 3 O -0.324 6.324 4 C -0.035 4.035 5 C 0.297 3.703 6 O -0.450 6.450 7 N -0.363 5.363 8 C 0.047 3.953 9 H 0.097 0.903 10 C -0.177 4.177 11 C -0.017 4.017 12 N -0.339 5.339 13 C 0.324 3.676 14 O -0.420 6.420 15 C -0.262 4.262 16 S 0.058 5.942 17 C -0.678 4.678 18 H 0.078 0.922 19 C -0.160 4.160 20 N -0.555 5.555 21 Si 0.738 3.262 22 H -0.186 1.186 23 H -0.184 1.184 24 H -0.160 1.160 25 C 0.043 3.957 26 H 0.103 0.897 27 C -0.188 4.188 28 C -0.162 4.162 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.256 0.744 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.090 0.910 46 H 0.064 0.936 47 H 0.098 0.902 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.381 -22.703 19.643 32.474 hybrid contribution -0.268 -0.107 -1.445 1.474 sum -12.648 -22.809 18.198 31.803 Atomic orbital electron populations 1.21788 0.93602 1.03398 1.02337 1.22748 0.95989 0.82039 1.01761 1.87985 1.19975 1.28660 1.95797 1.22350 0.83356 0.92511 1.05293 1.20894 0.82611 0.91598 0.75241 1.90730 1.50847 1.53384 1.50063 1.45802 1.06861 1.08549 1.75049 1.20826 0.96630 0.81888 0.95914 0.90327 1.22313 1.02496 0.95230 0.97653 1.21962 0.84490 0.96880 0.98370 1.48149 1.13029 1.55789 1.16981 1.19883 0.82995 0.77331 0.87410 1.90748 1.31952 1.55617 1.63637 1.23363 1.01859 1.04067 0.96951 1.84599 1.22815 1.73974 1.12846 1.22470 1.05623 1.43342 0.96357 0.92232 1.25582 1.01917 0.94065 0.94469 1.70024 1.37573 1.39963 1.07963 0.85846 0.79734 0.79375 0.81274 1.18607 1.18424 1.15990 1.21357 0.98678 0.93764 0.81866 0.89654 1.22036 0.93829 1.02609 1.00345 1.22207 0.94947 0.95550 1.03533 0.92739 0.92956 0.88684 0.91664 0.91354 0.87601 0.87149 0.74402 0.90698 0.90796 0.89673 0.89169 0.87558 0.87682 0.91393 0.92717 0.91013 0.93626 0.90240 0.87490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 71.98 0.74 -0.81 16 2 C 0.05 0.49 6.66 71.98 0.48 0.97 16 3 O -0.40 -7.14 9.87 -129.94 -1.28 -8.42 16 4 C 0.04 0.46 6.42 71.24 0.46 0.92 16 5 C 0.51 8.75 7.87 87.66 0.69 9.44 16 6 O -0.57 -16.19 16.16 16.02 0.26 -15.93 16 7 N -0.71 -7.99 5.08 -442.39 -2.25 -10.24 16 8 C 0.15 2.25 2.41 45.02 0.11 2.36 16 9 H 0.08 1.45 7.58 -2.39 -0.02 1.43 16 10 C -0.14 -2.40 5.67 30.82 0.17 -2.23 16 11 C 0.11 2.15 6.38 86.51 0.55 2.70 16 12 N -0.60 -14.80 2.97 -794.18 -2.36 -17.15 16 13 C 0.54 18.18 7.52 87.66 0.66 18.84 16 14 O -0.54 -21.55 11.43 -3.06 -0.03 -21.59 16 15 C -0.11 -4.24 4.51 71.24 0.32 -3.92 16 16 S -0.17 -8.48 18.55 -56.49 -1.05 -9.53 16 17 C -0.53 -30.97 10.04 67.95 0.68 -30.29 16 18 H 0.06 3.69 8.03 -2.91 -0.02 3.66 16 19 C 0.05 2.65 5.50 84.86 0.47 3.11 16 20 N -0.92 -56.02 13.97 21.65 0.30 -55.71 16 21 Si 0.92 44.93 27.74 68.60 1.90 46.83 16 22 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.24 -11.53 6.74 99.48 0.67 -10.86 16 25 C 0.15 2.83 3.49 44.98 0.16 2.99 16 26 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 27 C -0.13 -3.05 7.61 71.98 0.55 -2.50 16 28 C -0.12 -1.58 4.84 30.67 0.15 -1.44 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.42 1.81 8.60 -92.71 -0.80 1.01 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.09 1.94 5.93 -2.39 -0.01 1.92 16 41 H 0.11 3.79 7.94 -2.40 -0.02 3.77 16 42 H 0.10 3.79 7.69 -2.39 -0.02 3.77 16 43 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.05 1.61 6.54 -2.39 -0.02 1.60 16 45 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.04 1.27 6.96 -2.39 -0.02 1.25 16 47 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -81.73 397.48 1.80 -79.93 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.12 Total: 11.67 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 6.18 Total: 0.15 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -4.30 Total: -83.11 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -1.06 Total: -45.94 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.90 Total: 46.83 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.05 Total: -9.53 kcal Total: -81.73 1.80 -79.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074791812.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.481 kcal (2) G-P(sol) polarization free energy of solvation -81.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds