Wall clock time and date at job start Sat Apr 11 2020 07:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99445 * 2 1 4 4 H 1.09003 * 110.64203 * 26.86042 * 3 2 1 5 5 C 1.54324 * 110.87047 * 263.60931 * 3 2 1 6 6 N 1.47017 * 107.26936 * 219.37420 * 5 3 2 7 7 C 1.36945 * 125.64898 * 178.99721 * 6 5 3 8 8 H 1.07996 * 120.00243 * 179.97438 * 7 6 5 9 9 C 1.38814 * 119.99326 * 359.97438 * 7 6 5 10 10 N 1.31612 * 120.00683 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99521 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47204 * 89.99743 * 11 9 7 13 13 H 1.48498 * 109.47261 * 209.99921 * 11 9 7 14 14 H 1.48507 * 109.47301 * 329.99935 * 11 9 7 15 15 C 1.47469 * 108.72791 * 358.97662 * 6 5 3 16 16 C 1.54909 * 104.80522 * 24.07011 * 15 6 5 17 17 H 1.09002 * 111.00767 * 81.14076 * 16 15 6 18 18 N 1.46501 * 111.00357 * 204.95000 * 16 15 6 19 19 C 1.34777 * 120.00193 * 270.42361 * 18 16 15 20 20 O 1.21614 * 119.99936 * 359.97438 * 19 18 16 21 21 C 1.47391 * 120.00050 * 179.97438 * 19 18 16 22 22 N 1.31569 * 126.82563 * 0.02562 * 21 19 18 23 23 N 1.28380 * 111.97030 * 180.02562 * 22 21 19 24 24 C 1.46498 * 124.37348 * 180.02562 * 23 22 21 25 25 C 1.37047 * 111.25417 * 0.02562 * 23 22 21 26 26 C 1.39129 * 134.73148 * 180.02562 * 25 23 22 27 27 C 1.36675 * 119.79009 * 179.97438 * 26 25 23 28 28 C 1.38906 * 120.89417 * 0.02562 * 27 26 25 29 29 C 1.36719 * 120.52071 * 0.24239 * 28 27 26 30 30 C 1.39192 * 119.51041 * 359.49030 * 29 28 27 31 31 H 1.09001 * 109.46759 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47415 * 299.99502 * 1 2 3 33 33 H 1.09002 * 109.47715 * 59.99862 * 1 2 3 34 34 H 1.08999 * 109.88285 * 338.79661 * 5 3 2 35 35 H 1.09005 * 109.87883 * 99.95868 * 5 3 2 36 36 H 0.96998 * 120.00234 * 180.02562 * 10 9 7 37 37 H 1.08993 * 110.34800 * 265.25706 * 15 6 5 38 38 H 1.08992 * 110.40571 * 142.91497 * 15 6 5 39 39 H 0.97000 * 120.00145 * 90.41658 * 18 16 15 40 40 H 1.08997 * 109.46862 * 269.99494 * 24 23 22 41 41 H 1.08991 * 109.47337 * 30.00235 * 24 23 22 42 42 H 1.08997 * 109.47191 * 150.00218 * 24 23 22 43 43 H 1.07999 * 120.10353 * 359.97047 * 26 25 23 44 44 H 1.08002 * 119.55753 * 180.02562 * 27 26 25 45 45 H 1.08002 * 119.73658 * 179.97438 * 28 27 26 46 46 H 1.07997 * 120.24444 * 179.74434 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3350 2.0267 0.4609 5 6 2.3803 1.7426 -1.4330 6 7 3.6666 2.4502 -1.3549 7 6 4.3513 2.9810 -2.4156 8 1 5.2927 3.4846 -2.2531 9 6 3.8350 2.8716 -3.6995 10 7 2.6880 2.2574 -3.8976 11 14 4.7685 3.5962 -5.1462 12 1 5.6945 2.5755 -5.6991 13 1 3.8061 4.0128 -6.1977 14 1 5.5469 4.7765 -4.6920 15 6 4.0979 2.4945 0.0546 16 6 3.3815 1.2960 0.7255 17 1 3.9169 0.3654 0.5369 18 7 3.2163 1.5211 2.1637 19 6 4.1770 1.1259 3.0224 20 8 5.1808 0.5819 2.6035 21 6 4.0110 1.3530 4.4693 22 7 2.9867 1.9243 5.0654 23 7 3.1395 1.9753 6.3391 24 6 2.1646 2.5545 7.2666 25 6 4.3325 1.4180 6.7190 26 6 4.9763 1.2179 7.9361 27 6 6.1999 0.6098 7.9651 28 6 6.8141 0.1868 6.7932 29 6 6.2062 0.3759 5.5833 30 6 4.9571 0.9881 5.5318 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.4773 0.8666 -2.0743 35 1 1.6135 2.4098 -1.8268 36 1 2.3275 2.1807 -4.7948 37 1 3.7854 3.4305 0.5173 38 1 5.1793 2.3779 0.1250 39 1 2.4156 1.9547 2.4979 40 1 2.3799 3.6140 7.4051 41 1 1.1608 2.4380 6.8581 42 1 2.2278 2.0425 8.2267 43 1 4.5105 1.5422 8.8550 44 1 6.6961 0.4560 8.9120 45 1 7.7815 -0.2913 6.8378 46 1 6.6896 0.0490 4.6746 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082334981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:07 Heat of formation + Delta-G solvation = 53.892544 kcal Electronic energy + Delta-G solvation = -29819.018125 eV Core-core repulsion = 25711.705347 eV Total energy + Delta-G solvation = -4107.312778 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.65860 -39.49022 -37.99639 -37.99253 -35.85374 -34.06534 -33.74973 -31.71901 -30.79238 -30.34047 -28.88169 -27.86261 -26.71580 -26.07060 -24.44228 -23.76945 -22.64730 -22.13606 -20.49105 -20.35290 -19.76650 -18.15713 -17.44026 -16.98784 -16.55410 -16.37093 -16.09782 -15.47100 -15.45112 -14.81083 -14.56806 -14.46307 -14.36338 -14.21602 -14.04793 -13.64717 -13.37370 -13.18721 -13.14810 -12.72471 -12.27613 -12.19923 -12.14251 -11.84434 -11.53984 -11.41689 -11.19438 -11.08535 -10.97394 -10.77532 -10.71992 -10.17160 -10.14675 -9.99538 -9.89684 -9.74933 -9.09150 -8.98461 -8.73201 -8.55486 -8.17738 -6.85045 -5.69776 -3.04596 0.64684 1.15355 1.79772 2.09608 3.22307 3.30816 3.43684 3.48443 3.50172 3.66801 4.01210 4.17664 4.18931 4.52010 4.60783 4.68805 4.73244 4.76711 4.93320 4.98567 5.15985 5.17777 5.32419 5.43880 5.47722 5.52145 5.62055 5.68689 5.71965 5.76093 5.88881 5.95661 6.00078 6.09639 6.20785 6.23317 6.32148 6.46262 6.56198 6.66850 6.68203 6.89762 7.29512 7.51085 7.54309 7.74718 7.81308 7.90470 8.23605 8.38851 9.21181 9.81189 10.44542 11.41717 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015655 B = 0.002583 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.153207 B =10839.517454 C =11774.456706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.056 3.944 4 H 0.063 0.937 5 C 0.166 3.834 6 N -0.600 5.600 7 C -0.227 4.227 8 H 0.081 0.919 9 C -0.008 4.008 10 N -0.923 5.923 11 Si 0.914 3.086 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.281 1.281 15 C 0.130 3.870 16 C 0.132 3.868 17 H 0.108 0.892 18 N -0.701 5.701 19 C 0.605 3.395 20 O -0.525 6.525 21 C 0.010 3.990 22 N -0.212 5.212 23 N -0.320 5.320 24 C 0.094 3.906 25 C 0.064 3.936 26 C -0.122 4.122 27 C -0.084 4.084 28 C -0.144 4.144 29 C -0.039 4.039 30 C -0.109 4.109 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.045 0.955 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.253 0.747 37 H 0.024 0.976 38 H 0.052 0.948 39 H 0.402 0.598 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.125 0.875 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.172 -1.912 26.817 26.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.295 6.295 3 C -0.003 4.003 4 H 0.081 0.919 5 C 0.041 3.959 6 N -0.328 5.328 7 C -0.355 4.355 8 H 0.099 0.901 9 C -0.204 4.204 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.207 1.207 15 C 0.003 3.997 16 C 0.028 3.972 17 H 0.126 0.874 18 N -0.351 5.351 19 C 0.389 3.611 20 O -0.399 6.399 21 C -0.161 4.161 22 N -0.041 5.041 23 N -0.113 5.113 24 C -0.046 4.046 25 C -0.048 4.048 26 C -0.143 4.143 27 C -0.105 4.105 28 C -0.163 4.163 29 C -0.059 4.059 30 C -0.116 4.116 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.236 0.764 40 H 0.099 0.901 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.143 0.857 44 H 0.148 0.852 45 H 0.148 0.852 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.538 -1.888 26.137 26.327 hybrid contribution 0.292 0.581 -0.311 0.721 sum -2.246 -1.307 25.825 25.956 Atomic orbital electron populations 1.22707 0.81773 1.02026 0.99732 1.87909 1.19060 1.27538 1.95032 1.23847 0.92887 0.84104 0.99464 0.91869 1.21552 0.88256 0.97211 0.88932 1.44271 1.21499 1.66321 1.00726 1.19084 1.02389 1.29284 0.84738 0.90116 1.24815 0.97434 1.00760 0.97389 1.69935 1.19265 1.47288 1.20552 0.86079 0.78609 0.78612 0.82224 1.21495 1.21712 1.20657 1.21842 0.97892 0.93787 0.86181 1.22466 0.96649 1.01206 0.76928 0.87374 1.45778 1.21629 1.60591 1.07090 1.16606 0.83465 0.78707 0.82362 1.90815 1.28755 1.42862 1.77479 1.22854 0.92725 1.05986 0.94547 1.72867 1.23936 1.15069 0.92214 1.45112 1.15352 1.47419 1.03399 1.22076 0.91846 0.99307 0.91374 1.19166 0.88485 1.00940 0.96216 1.19718 0.96312 1.04210 0.94106 1.20730 0.94133 0.96868 0.98757 1.20854 1.00963 1.02592 0.91923 1.20473 0.91934 0.94519 0.99003 1.19454 0.96855 1.04681 0.90654 0.90269 0.94852 0.93636 0.91895 0.93322 0.93683 0.95843 0.92955 0.76379 0.90056 0.88513 0.89025 0.85704 0.85228 0.85233 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.85 101.05 1.10 1.60 16 2 O -0.38 -7.18 10.44 -35.23 -0.37 -7.55 16 3 C 0.06 1.10 3.08 -24.90 -0.08 1.02 16 4 H 0.06 1.10 7.68 -51.93 -0.40 0.70 16 5 C 0.17 4.10 5.15 -3.07 -0.02 4.09 16 6 N -0.60 -15.75 3.40 -170.04 -0.58 -16.33 16 7 C -0.23 -6.45 10.28 -15.05 -0.15 -6.60 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 10 N -0.92 -27.29 10.31 55.49 0.57 -26.72 16 11 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 C 0.13 2.88 6.93 -2.50 -0.02 2.86 16 16 C 0.13 2.61 3.09 -65.78 -0.20 2.40 16 17 H 0.11 2.37 7.63 -51.93 -0.40 1.98 16 18 N -0.70 -11.64 5.21 -52.81 -0.28 -11.91 16 19 C 0.61 10.53 7.81 -12.54 -0.10 10.44 16 20 O -0.53 -10.59 16.09 5.27 0.08 -10.51 16 21 C 0.01 0.15 7.32 -80.76 -0.59 -0.44 16 22 N -0.21 -2.81 11.52 34.46 0.40 -2.41 16 23 N -0.32 -3.43 3.74 -65.50 -0.24 -3.67 16 24 C 0.09 0.51 11.24 59.85 0.67 1.18 16 25 C 0.06 0.72 6.85 -84.21 -0.58 0.15 16 26 C -0.12 -1.03 9.94 -39.82 -0.40 -1.42 16 27 C -0.08 -0.66 9.96 -39.90 -0.40 -1.06 16 28 C -0.14 -1.35 9.98 -39.88 -0.40 -1.74 16 29 C -0.04 -0.49 9.87 -39.78 -0.39 -0.88 16 30 C -0.11 -1.52 6.34 -105.05 -0.67 -2.19 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.03 0.42 8.11 -51.93 -0.42 0.00 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 1.76 7.30 -51.93 -0.38 1.38 16 35 H 0.05 1.29 7.51 -51.93 -0.39 0.90 16 36 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.40 5.79 8.27 -40.82 -0.34 5.45 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.28 8.09 -51.93 -0.42 -0.14 16 43 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 45 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 46 H 0.14 1.82 7.65 -52.49 -0.40 1.42 16 LS Contribution 387.17 15.07 5.83 5.83 Total: -1.00 -35.16 387.17 -8.41 -43.56 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.50 Total: 3.22 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -2.31 Total: 9.08 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: -0.13 Total: -61.04 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.28 Total: -18.06 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.16 -8.41 -43.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082334981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.454 kcal (2) G-P(sol) polarization free energy of solvation -35.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds